CuGenDBv2

Gene ID	ClCG02G007567
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Photosystem I assembly protein Ycf3
Genome location	CG_Chr02:8941894..8942294
RNA-Seq Expression	ClCG02G007567
Synteny	ClCG02G007567
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR011990 - Tetratricopeptide-like helical domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

CUR04437.1 ycf3 [Acacia longispinea]

1.3e-18

94.23

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHTRNGEHTKA+ Y
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY

QFQ38394.1 hypothetical chloroplast RF34 [Phyllagathis nudipes]

3.4e-19

89.47

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVYCSMEL
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHTRNGEHTKA+ Y S  L
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVYCSMEL

QFQ38562.1 hypothetical chloroplast RF34 [Sonerila plagiocardia]

3.4e-19

89.47

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVYCSMEL
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHTRNGEHTKA+ Y S  L
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVYCSMEL

QFQ40913.1 hypothetical chloroplast RF34 [Phyllagathis tetrandra]

3.4e-19

89.47

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVYCSMEL
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHTRNGEHTKA+ Y S  L
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVYCSMEL

YP_009745496.1 photosystem I assembly protein Ycf3 [Tribulus terrestris]

1.3e-18

94.23

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHTRNGEHTKA+ Y
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY

TrEMBL top hits

e value

%identity

Alignment

A0A218KG30 Photosystem I assembly protein Ycf3

6.2e-19

94.23

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHTRNGEHTKA+ Y
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY

A0A5P8G6H0 Photosystem I assembly protein Ycf3

1.6e-19

89.47

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVYCSMEL
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHTRNGEHTKA+ Y S  L
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVYCSMEL

A0A5P8GE29 Photosystem I assembly protein Ycf3

1.6e-19

89.47

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVYCSMEL
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHTRNGEHTKA+ Y S  L
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVYCSMEL

A0A5P8GT88 Photosystem I assembly protein Ycf3

1.6e-19

89.47

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVYCSMEL
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHTRNGEHTKA+ Y S  L
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVYCSMEL

A0A6B9TUJ8 Photosystem I assembly protein Ycf3

6.2e-19

94.23

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHTRNGEHTKA+ Y
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY

SwissProt top hits

e value

%identity

Alignment

P61843 Photosystem I assembly protein Ycf3

8.3e-21

92.31

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHT NGEHTKA+ Y
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY

Q09X16 Photosystem I assembly protein Ycf3

1.7e-21

94.23

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHTRNGEHTKA+ Y
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY

Q4VZH4 Photosystem I assembly protein Ycf3

1.7e-21

94.23

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHTRNGEHTKA+ Y
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY

Q53CF3 Photosystem I assembly protein Ycf3

8.3e-21

92.31

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHT NGEHTKA+ Y
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY

Q8S8X3 Photosystem I assembly protein Ycf3

8.3e-21

92.31

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHT NGEHTKA+ Y
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY

Arabidopsis top hits

e value

%identity

Alignment

ATCG00360.1 Tetratricopeptide repeat (TPR)-like superfamily protein

5.9e-22

92.31

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Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI LIHT NGEHTKA+ Y
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVY

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

2.7e-06

86.67

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Query:  DIDDSGDIDDSDDIDRDLDTELELLTMMNA
        DIDDS DID S+DIDR+LDTELELLTMMNA
Subjt:  DIDDSGDIDDSDDIDRDLDTELELLTMMNA

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

2.7e-06

86.67

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Query:  DIDDSGDIDDSDDIDRDLDTELELLTMMNA
        DIDDS DID S+DIDR+LDTELELLTMMNA
Subjt:  DIDDSGDIDDSDDIDRDLDTELELLTMMNA

Sequences

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CDS sequence

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ATGTCGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTACAGAATTATTATGAAGCTATGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAAG
TCTTATCCACACAAGGAACGGAGAACATACGAAAGCAGTAGTATATTGTTCCATGGAGCTAAGTGACGATATTGATGATAGTGGCGATATTGATGATAGTGACGATATCG
ACCGTGACCTTGATACGGAGCTGGAGCTTCTAACTATGATGAATGCGCATGGGAATCACTTGGGGTCTGAATAA

mRNA sequence

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Protein sequence

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MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNISLIHTRNGEHTKAVVYCSMELSDDIDDSGDIDDSDDIDRDLDTELELLTMMNAHGNHLGSE

ClCG02G007567 (gene) of Watermelon (Charleston Gray) v2.5 genome