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ClCG02G008100 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG02G008100
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationCG_Chr02:10193698..10194785
RNA-Seq ExpressionClCG02G008100
SyntenyClCG02G008100
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041779.1 uncharacterized protein E6C27_scaffold67G001380 [Cucumis melo var. makuwa]4.0e-1531.84Show/hide
Query:  KAQVCFNIMDLISKAEFTKTVLDLGPCYPKLVGEFIVNLSPSFNNSNSPDYRKVHVFGHYFIFFAFAITIILEDLFQSWCSN------------YGGFKK
        K Q C +IMDLI KA   KT+ ++GP YP+L+ EFIVNL   FN+ +S DY+ VH+ G  F+     I   LE+     CS              GG   
Subjt:  KAQVCFNIMDLISKAEFTKTVLDLGPCYPKLVGEFIVNLSPSFNNSNSPDYRKVHVFGHYFIFFAFAITIILEDLFQSWCSN------------YGGFKK

Query:  HWPKPRQLPSVELRAKYSVLFQIGIANCLIMEHSS-------------------------LAQLWHHIKSQALCLPIVYSHLISGILLSQKPYLL-----
         WP    +P+  L  KY++L +I IAN     H+S                           QL  H+ S  + +PI +  L S +LL     +L     
Subjt:  HWPKPRQLPSVELRAKYSVLFQIGIANCLIMEHSS-------------------------LAQLWHHIKSQALCLPIVYSHLISGILLSQKPYLL-----

Query:  PAKETIVELLGHR------VPDL
        P  E     L HR      VPD+
Subjt:  PAKETIVELLGHR------VPDL

KAA0056211.1 uncharacterized protein E6C27_scaffold85G00030 [Cucumis melo var. makuwa]5.3e-1539.26Show/hide
Query:  KAQVCFNIMDLISKAEFTKTVLDLGPCYPKLVGEFIVNLSPSFNNSNSPDYRKVHVFGHYFIFFAFAITIILEDLFQSWCSN------------YGGFKK
        K Q C +IMDLI KA   KT+ D+GP YP+L+ EFIVNL   FNN +S DY+ VH+ G  F+     I   L +     CS              GG   
Subjt:  KAQVCFNIMDLISKAEFTKTVLDLGPCYPKLVGEFIVNLSPSFNNSNSPDYRKVHVFGHYFIFFAFAITIILEDLFQSWCSN------------YGGFKK

Query:  HWPKPRQLPSVELRAKYSVLFQIGIANCLIMEHSS
         WP    +P+  L  KY++L +IGI N     H+S
Subjt:  HWPKPRQLPSVELRAKYSVLFQIGIANCLIMEHSS

KAA0059849.1 uncharacterized protein E6C27_scaffold108G001320 [Cucumis melo var. makuwa]2.4e-1530.1Show/hide
Query:  IELFVKAQVCFNIMDLISKAEFTKTVLDLGPCYPKLVGEFIVNLSPSFNNSNSPDYRKVHV--------------FGHYFIFFAFAITIILEDLFQSWCS
        + +  K Q C ++M+LI+KAE +KT+ D+G  YP+L+ EF+VNL   FN+ +SP+Y+ VH+              F   F+   FA++++L ++  S  S
Subjt:  IELFVKAQVCFNIMDLISKAEFTKTVLDLGPCYPKLVGEFIVNLSPSFNNSNSPDYRKVHV--------------FGHYFIFFAFAITIILEDLFQSWCS

Query:  NYGGFKKHWPKPRQLPSVELRAKYSVLFQIGIANCLIMEHSSLA-------------------------QLWHHIKSQALCLPIVYSHLISGILLSQKPY
          GG    W     +P+  L  KY++L +IGIAN     H+S                           QL  H+ S  + LPI      SG+LL     
Subjt:  NYGGFKKHWPKPRQLPSVELRAKYSVLFQIGIANCLIMEHSSLA-------------------------QLWHHIKSQALCLPIVYSHLISGILLSQKPY

Query:  LLPAKE
        +L + +
Subjt:  LLPAKE

TYK27067.1 uncharacterized protein E5676_scaffold95G00660 [Cucumis melo var. makuwa]4.0e-1531.84Show/hide
Query:  KAQVCFNIMDLISKAEFTKTVLDLGPCYPKLVGEFIVNLSPSFNNSNSPDYRKVHVFGHYFIFFAFAITIILEDLFQSWCSN------------YGGFKK
        K Q C +IMDLI KA   KT+ ++GP YP+L+ EFIVNL   FN+ +S DY+ VH+ G  F+     I   LE+     CS              GG   
Subjt:  KAQVCFNIMDLISKAEFTKTVLDLGPCYPKLVGEFIVNLSPSFNNSNSPDYRKVHVFGHYFIFFAFAITIILEDLFQSWCSN------------YGGFKK

Query:  HWPKPRQLPSVELRAKYSVLFQIGIANCLIMEHSS-------------------------LAQLWHHIKSQALCLPIVYSHLISGILLSQKPYLL-----
         WP    +P+  L  KY++L +I IAN     H+S                           QL  H+ S  + +PI +  L S +LL     +L     
Subjt:  HWPKPRQLPSVELRAKYSVLFQIGIANCLIMEHSS-------------------------LAQLWHHIKSQALCLPIVYSHLISGILLSQKPYLL-----

Query:  PAKETIVELLGHR------VPDL
        P  E     L HR      VPD+
Subjt:  PAKETIVELLGHR------VPDL

XP_008465030.1 PREDICTED: uncharacterized protein LOC103502746 [Cucumis melo]5.3e-1539.26Show/hide
Query:  KAQVCFNIMDLISKAEFTKTVLDLGPCYPKLVGEFIVNLSPSFNNSNSPDYRKVHVFGHYFIFFAFAITIILEDLFQSWCSN------------YGGFKK
        K Q C +IMDLI KA   KT+ D+GP YP+L+ EFIVNL   FNN +S DY+ VH+ G  F+     I   L +     CS              GG   
Subjt:  KAQVCFNIMDLISKAEFTKTVLDLGPCYPKLVGEFIVNLSPSFNNSNSPDYRKVHVFGHYFIFFAFAITIILEDLFQSWCSN------------YGGFKK

Query:  HWPKPRQLPSVELRAKYSVLFQIGIANCLIMEHSS
         WP    +P+  L  KY++L +IGI N     H+S
Subjt:  HWPKPRQLPSVELRAKYSVLFQIGIANCLIMEHSS

TrEMBL top hitse value%identityAlignment
A0A1S3CMY0 uncharacterized protein LOC1035027462.5e-1539.26Show/hide
Query:  KAQVCFNIMDLISKAEFTKTVLDLGPCYPKLVGEFIVNLSPSFNNSNSPDYRKVHVFGHYFIFFAFAITIILEDLFQSWCSN------------YGGFKK
        K Q C +IMDLI KA   KT+ D+GP YP+L+ EFIVNL   FNN +S DY+ VH+ G  F+     I   L +     CS              GG   
Subjt:  KAQVCFNIMDLISKAEFTKTVLDLGPCYPKLVGEFIVNLSPSFNNSNSPDYRKVHVFGHYFIFFAFAITIILEDLFQSWCSN------------YGGFKK

Query:  HWPKPRQLPSVELRAKYSVLFQIGIANCLIMEHSS
         WP    +P+  L  KY++L +IGI N     H+S
Subjt:  HWPKPRQLPSVELRAKYSVLFQIGIANCLIMEHSS

A0A5A7TK74 Uncharacterized protein1.9e-1531.84Show/hide
Query:  KAQVCFNIMDLISKAEFTKTVLDLGPCYPKLVGEFIVNLSPSFNNSNSPDYRKVHVFGHYFIFFAFAITIILEDLFQSWCSN------------YGGFKK
        K Q C +IMDLI KA   KT+ ++GP YP+L+ EFIVNL   FN+ +S DY+ VH+ G  F+     I   LE+     CS              GG   
Subjt:  KAQVCFNIMDLISKAEFTKTVLDLGPCYPKLVGEFIVNLSPSFNNSNSPDYRKVHVFGHYFIFFAFAITIILEDLFQSWCSN------------YGGFKK

Query:  HWPKPRQLPSVELRAKYSVLFQIGIANCLIMEHSS-------------------------LAQLWHHIKSQALCLPIVYSHLISGILLSQKPYLL-----
         WP    +P+  L  KY++L +I IAN     H+S                           QL  H+ S  + +PI +  L S +LL     +L     
Subjt:  HWPKPRQLPSVELRAKYSVLFQIGIANCLIMEHSS-------------------------LAQLWHHIKSQALCLPIVYSHLISGILLSQKPYLL-----

Query:  PAKETIVELLGHR------VPDL
        P  E     L HR      VPD+
Subjt:  PAKETIVELLGHR------VPDL

A0A5A7URQ6 Uncharacterized protein2.5e-1539.26Show/hide
Query:  KAQVCFNIMDLISKAEFTKTVLDLGPCYPKLVGEFIVNLSPSFNNSNSPDYRKVHVFGHYFIFFAFAITIILEDLFQSWCSN------------YGGFKK
        K Q C +IMDLI KA   KT+ D+GP YP+L+ EFIVNL   FNN +S DY+ VH+ G  F+     I   L +     CS              GG   
Subjt:  KAQVCFNIMDLISKAEFTKTVLDLGPCYPKLVGEFIVNLSPSFNNSNSPDYRKVHVFGHYFIFFAFAITIILEDLFQSWCSN------------YGGFKK

Query:  HWPKPRQLPSVELRAKYSVLFQIGIANCLIMEHSS
         WP    +P+  L  KY++L +IGI N     H+S
Subjt:  HWPKPRQLPSVELRAKYSVLFQIGIANCLIMEHSS

A0A5D3DMD7 Uncharacterized protein1.1e-1530.1Show/hide
Query:  IELFVKAQVCFNIMDLISKAEFTKTVLDLGPCYPKLVGEFIVNLSPSFNNSNSPDYRKVHV--------------FGHYFIFFAFAITIILEDLFQSWCS
        + +  K Q C ++M+LI+KAE +KT+ D+G  YP+L+ EF+VNL   FN+ +SP+Y+ VH+              F   F+   FA++++L ++  S  S
Subjt:  IELFVKAQVCFNIMDLISKAEFTKTVLDLGPCYPKLVGEFIVNLSPSFNNSNSPDYRKVHV--------------FGHYFIFFAFAITIILEDLFQSWCS

Query:  NYGGFKKHWPKPRQLPSVELRAKYSVLFQIGIANCLIMEHSSLA-------------------------QLWHHIKSQALCLPIVYSHLISGILLSQKPY
          GG    W     +P+  L  KY++L +IGIAN     H+S                           QL  H+ S  + LPI      SG+LL     
Subjt:  NYGGFKKHWPKPRQLPSVELRAKYSVLFQIGIANCLIMEHSSLA-------------------------QLWHHIKSQALCLPIVYSHLISGILLSQKPY

Query:  LLPAKE
        +L + +
Subjt:  LLPAKE

A0A5D3DTI5 Uncharacterized protein1.9e-1531.84Show/hide
Query:  KAQVCFNIMDLISKAEFTKTVLDLGPCYPKLVGEFIVNLSPSFNNSNSPDYRKVHVFGHYFIFFAFAITIILEDLFQSWCSN------------YGGFKK
        K Q C +IMDLI KA   KT+ ++GP YP+L+ EFIVNL   FN+ +S DY+ VH+ G  F+     I   LE+     CS              GG   
Subjt:  KAQVCFNIMDLISKAEFTKTVLDLGPCYPKLVGEFIVNLSPSFNNSNSPDYRKVHVFGHYFIFFAFAITIILEDLFQSWCSN------------YGGFKK

Query:  HWPKPRQLPSVELRAKYSVLFQIGIANCLIMEHSS-------------------------LAQLWHHIKSQALCLPIVYSHLISGILLSQKPYLL-----
         WP    +P+  L  KY++L +I IAN     H+S                           QL  H+ S  + +PI +  L S +LL     +L     
Subjt:  HWPKPRQLPSVELRAKYSVLFQIGIANCLIMEHSS-------------------------LAQLWHHIKSQALCLPIVYSHLISGILLSQKPYLL-----

Query:  PAKETIVELLGHR------VPDL
        P  E     L HR      VPD+
Subjt:  PAKETIVELLGHR------VPDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATTTACAATTTACAAAACTACGAGACTTCAAGAGGTTTAGGATACCAATCCCAACAGTGTCCCTTTGTAAATTGCTATCAAGTATCAAAGAAGTCGCTGCTAATGT
TGCTACTAGTTCAGAGACCTCTGCAGACCTTAGTCATTCTAACAATTCTGATGATAATTTTGTTTCTTCCAAAGATTGCGCCTTAAAAAGCAGTTCAGACAATCAAGTCG
AGCCTATTCGTGCTTTCGCAACTCGTGCATCCTCCCAAGCCAGAGGGAAGAAACCCGATACTTTCATTGAATTGTTTGTTAAAGCTCAAGTGTGTTTTAACATCATGGAT
TTGATTTCTAAAGCTGAATTTACTAAGACTGTTCTGGATCTTGGCCCTTGCTACCCTAAACTTGTTGGGGAGTTTATTGTGAATCTATCTCCGTCCTTTAACAACTCTAA
TTCTCCTGACTATAGAAAAGTTCATGTGTTTGGACACTACTTTATCTTCTTTGCCTTTGCGATTACAATTATCTTGGAAGATTTGTTCCAGAGTTGGTGTTCGAATTATG
GCGGCTTCAAGAAACACTGGCCAAAGCCTAGACAACTTCCCTCGGTTGAATTAAGGGCTAAGTATTCTGTGTTGTTTCAAATTGGAATTGCAAATTGTTTGATTATGGAG
CATTCATCATTGGCACAACTATGGCATCATATCAAGTCTCAAGCTCTCTGTCTTCCCATTGTTTATTCTCATCTCATCTCAGGGATATTACTGTCTCAAAAACCATATCT
TCTTCCTGCAAAGGAAACAATTGTCGAGCTTCTGGGTCATCGTGTGCCTGATCTTGTTCCCTCTGCTTCTTTTAAGACTGATGATGCTCCTAATCACTTCATACTCTTAT
TGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATTTACAATTTACAAAACTACGAGACTTCAAGAGGTTTAGGATACCAATCCCAACAGTGTCCCTTTGTAAATTGCTATCAAGTATCAAAGAAGTCGCTGCTAATGT
TGCTACTAGTTCAGAGACCTCTGCAGACCTTAGTCATTCTAACAATTCTGATGATAATTTTGTTTCTTCCAAAGATTGCGCCTTAAAAAGCAGTTCAGACAATCAAGTCG
AGCCTATTCGTGCTTTCGCAACTCGTGCATCCTCCCAAGCCAGAGGGAAGAAACCCGATACTTTCATTGAATTGTTTGTTAAAGCTCAAGTGTGTTTTAACATCATGGAT
TTGATTTCTAAAGCTGAATTTACTAAGACTGTTCTGGATCTTGGCCCTTGCTACCCTAAACTTGTTGGGGAGTTTATTGTGAATCTATCTCCGTCCTTTAACAACTCTAA
TTCTCCTGACTATAGAAAAGTTCATGTGTTTGGACACTACTTTATCTTCTTTGCCTTTGCGATTACAATTATCTTGGAAGATTTGTTCCAGAGTTGGTGTTCGAATTATG
GCGGCTTCAAGAAACACTGGCCAAAGCCTAGACAACTTCCCTCGGTTGAATTAAGGGCTAAGTATTCTGTGTTGTTTCAAATTGGAATTGCAAATTGTTTGATTATGGAG
CATTCATCATTGGCACAACTATGGCATCATATCAAGTCTCAAGCTCTCTGTCTTCCCATTGTTTATTCTCATCTCATCTCAGGGATATTACTGTCTCAAAAACCATATCT
TCTTCCTGCAAAGGAAACAATTGTCGAGCTTCTGGGTCATCGTGTGCCTGATCTTGTTCCCTCTGCTTCTTTTAAGACTGATGATGCTCCTAATCACTTCATACTCTTAT
TGAAGTGA
Protein sequenceShow/hide protein sequence
MYLQFTKLRDFKRFRIPIPTVSLCKLLSSIKEVAANVATSSETSADLSHSNNSDDNFVSSKDCALKSSSDNQVEPIRAFATRASSQARGKKPDTFIELFVKAQVCFNIMD
LISKAEFTKTVLDLGPCYPKLVGEFIVNLSPSFNNSNSPDYRKVHVFGHYFIFFAFAITIILEDLFQSWCSNYGGFKKHWPKPRQLPSVELRAKYSVLFQIGIANCLIME
HSSLAQLWHHIKSQALCLPIVYSHLISGILLSQKPYLLPAKETIVELLGHRVPDLVPSASFKTDDAPNHFILLLK