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ClCG02G008230 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG02G008230
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCG_Chr02:10492832..10493302
RNA-Seq ExpressionClCG02G008230
SyntenyClCG02G008230
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051442.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.0e-0837.31Show/hide
Query:  RAIKALQDLLKLLATVIVEEKETMKSTVYA---LNLSDTVRRQVIEEETSYKIWNKLNE-FTKYDISEEKII---------TQFPNL-------------
        +A+KAL+D  +L AT+   E+ET++   Y+   +N++D V RQVIEE T++  W KL   + K D+  +  I          Q  NL             
Subjt:  RAIKALQDLLKLLATVIVEEKETMKSTVYA---LNLSDTVRRQVIEEETSYKIWNKLNE-FTKYDISEEKII---------TQFPNL-------------

Query:  ----GEKMGEENEALILLNSLPKNYTEVKTTDKY
            GEK+G ENEA IL+NS+   Y EVKT  KY
Subjt:  ----GEKMGEENEALILLNSLPKNYTEVKTTDKY

XP_038885928.1 uncharacterized protein LOC120076236 [Benincasa hispida]3.6e-0935.07Show/hide
Query:  RAIKALQDLLKLLATVIVEEKETMKSTVY---ALNLSDTVRRQVIEEETSYKIWNKLNE----------------FTKYDISEEKIIT-----------Q
        +A+ A+ D  K    +   EKET++S  Y    LN+ D+V RQ+++  T+Y +WNKLN+                F  Y +   K +T            
Subjt:  RAIKALQDLLKLLATVIVEEKETMKSTVY---ALNLSDTVRRQVIEEETSYKIWNKLNE----------------FTKYDISEEKIIT-----------Q

Query:  FPNLGEKMGEENEALILLNSLPKNYTEVKTTDKY
        F ++G+ +GEENEA ILLNSLP+ + +VKT  KY
Subjt:  FPNLGEKMGEENEALILLNSLPKNYTEVKTTDKY

XP_038887098.1 uncharacterized protein LOC120077280 [Benincasa hispida]1.3e-0935.82Show/hide
Query:  RAIKALQDLLKLLATVIVEEKETMKSTVYA---LNLSDTVRRQVIEEETSYKIWNKLNE----------------FTKYDISEEKIIT-----------Q
        +A+ A+ D  K   T+   EKET++S  Y    LN++D+V RQ++++ T Y +WNKLNE                F  Y +   K +T           +
Subjt:  RAIKALQDLLKLLATVIVEEKETMKSTVYA---LNLSDTVRRQVIEEETSYKIWNKLNE----------------FTKYDISEEKIIT-----------Q

Query:  FPNLGEKMGEENEALILLNSLPKNYTEVKTTDKY
        F ++G+ +GEENEA IL NSLP+ + +VKT  KY
Subjt:  FPNLGEKMGEENEALILLNSLPKNYTEVKTTDKY

XP_038889933.1 uncharacterized protein LOC120079695 [Benincasa hispida]8.1e-0934.33Show/hide
Query:  RAIKALQDLLKLLATVIVEEKETMKSTVY---ALNLSDTVRRQVIEEETSYKIWNKLNE----------------FTKYDISEEKIIT-----------Q
        +A+ A+ DL K   T    EKE ++   Y    LN++D V RQ+++ +T++ +WNKLNE                F  Y +   K +T           +
Subjt:  RAIKALQDLLKLLATVIVEEKETMKSTVY---ALNLSDTVRRQVIEEETSYKIWNKLNE----------------FTKYDISEEKIIT-----------Q

Query:  FPNLGEKMGEENEALILLNSLPKNYTEVKTTDKY
        F ++G+ +GEENE  ILLNSLP ++ +VK T KY
Subjt:  FPNLGEKMGEENEALILLNSLPKNYTEVKTTDKY

XP_038890043.1 uncharacterized protein LOC120079747 [Benincasa hispida]1.8e-0835.82Show/hide
Query:  RAIKALQDLLKLLATVIVEEKETMKST---VYALNLSDTVRRQVIEEETSYKIWNKLNE----------------FTKYDISEEKIIT-----------Q
        +A+ A+ D  K   T+   EKET++        LN++D V RQVI + T+Y +WNKLNE                F  Y +   K +T           +
Subjt:  RAIKALQDLLKLLATVIVEEKETMKST---VYALNLSDTVRRQVIEEETSYKIWNKLNE----------------FTKYDISEEKIIT-----------Q

Query:  FPNLGEKMGEENEALILLNSLPKNYTEVKTTDKY
        F ++G  +GEENEA ILLNSLP+++ + KT  KY
Subjt:  FPNLGEKMGEENEALILLNSLPKNYTEVKTTDKY

TrEMBL top hitse value%identityAlignment
A0A2P5CTT8 Uncharacterized protein6.3e-0732.84Show/hide
Query:  RAIKALQDLLKLLATVIVEEKETMKSTVYA---LNLSDTVRRQVIEEETSYKIWNKLNEF-------TKYDISEE--------------------KIITQ
        +  K L D   L  T+   EKE +  T Y+   LNL+D V RQV E++T+ K+W+KL+          K  + E+                    +I   
Subjt:  RAIKALQDLLKLLATVIVEEKETMKSTVYA---LNLSDTVRRQVIEEETSYKIWNKLNEF-------TKYDISEE--------------------KIITQ

Query:  FPNLGEKMGEENEALILLNSLPKNYTEVKTTDKY
          N+ EK+ +EN+A+I+LNSLP++Y ++K+T KY
Subjt:  FPNLGEKMGEENEALILLNSLPKNYTEVKTTDKY

A0A5A7U6R2 Retrovirus-related Pol polyprotein from transposon TNT 1-941.9e-0837.31Show/hide
Query:  RAIKALQDLLKLLATVIVEEKETMKSTVYA---LNLSDTVRRQVIEEETSYKIWNKLNE-FTKYDISEEKII---------TQFPNL-------------
        +A+KAL+D  +L AT+   E+ET++   Y+   +N++D V RQVIEE T++  W KL   + K D+  +  I          Q  NL             
Subjt:  RAIKALQDLLKLLATVIVEEKETMKSTVYA---LNLSDTVRRQVIEEETSYKIWNKLNE-FTKYDISEEKII---------TQFPNL-------------

Query:  ----GEKMGEENEALILLNSLPKNYTEVKTTDKY
            GEK+G ENEA IL+NS+   Y EVKT  KY
Subjt:  ----GEKMGEENEALILLNSLPKNYTEVKTTDKY

A0A5A7UJ23 Integrase catalytic domain-containing protein8.2e-0737.84Show/hide
Query:  RAIKALQDLLKLLATVIVEEKETMKSTVY---ALNLSDTVRRQVIEEETSYKIWNKLNEFTKYDISEEKIITQFPNLGEKMGEENEALILLNSLPKNYTE
        +A+KA +D  +L AT+   E+ET++   Y    +N++D V RQVIEE  ++      NEF       +K+   F   GEK+G E+EA IL+NS+   Y E
Subjt:  RAIKALQDLLKLLATVIVEEKETMKSTVY---ALNLSDTVRRQVIEEETSYKIWNKLNEFTKYDISEEKIITQFPNLGEKMGEENEALILLNSLPKNYTE

Query:  VKTTDKYDEAV
        VK   KY   +
Subjt:  VKTTDKYDEAV

A0A5A7UZ07 Retrotransposon protein, putative, Ty1-copia subclass1.4e-0634.56Show/hide
Query:  RAIKALQDLLKLLATVIVEEKETMKSTVYA---LNLSDTVRRQVIEEETSYKIWNKLNE-FTKYDISEEKII---------TQFPNLGEKMGE-------
        +A+KAL+D  +LLAT+   E+ET++   Y    +N+++ V RQ+IEE T++  W KL   + K D+  +  I          Q  NL E + E       
Subjt:  RAIKALQDLLKLLATVIVEEKETMKSTVYA---LNLSDTVRRQVIEEETSYKIWNKLNE-FTKYDISEEKII---------TQFPNLGEKMGE-------

Query:  ----------ENEALILLNSLPKNYTEVKTTDKYDE
                  E+EA IL+NS+   Y EVKTT K D+
Subjt:  ----------ENEALILLNSLPKNYTEVKTTDKYDE

A0A5D3DWH4 Retrovirus-related Pol polyprotein from transposon TNT 1-948.2e-0736Show/hide
Query:  DLLKLLATVIVEEKETMKSTVY---ALNLSDTVRRQVIEEETSYKIWNKLNE-FTKYDISE------------------------EKIITQFPNLGEKMG
        D   L AT+   +K++M+ T Y    LN++D V RQVI E T+Y+IW KL   + K D+                          +K+  +F  LGEK+ 
Subjt:  DLLKLLATVIVEEKETMKSTVY---ALNLSDTVRRQVIEEETSYKIWNKLNE-FTKYDISE------------------------EKIITQFPNLGEKMG

Query:  EENEALILLNSLPKNYTEVKTTDKY
         E+EA I +NSL   Y EVK+T KY
Subjt:  EENEALILLNSLPKNYTEVKTTDKY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGAGCCATTAAGGCACTCCAAGACCTTTTAAAGTTACTTGCCACTGTGATAGTAGAAGAAAAAGAAACTATGAAATCAACAGTTTATGCCTTGAATCTTAGTGATACTGT
GCGAAGACAAGTTATAGAAGAAGAAACGTCTTATAAGATTTGGAATAAGTTGAATGAATTTACCAAATACGATATATCTGAGGAAAAGATAATAACACAATTCCCAAACC
TTGGAGAAAAGATGGGTGAAGAGAATGAAGCATTAATTCTTTTGAACTCACTACCAAAAAACTACACAGAAGTCAAAACAACAGATAAATATGACGAAGCTGTTAAGCTA
GCCCATTAA
mRNA sequenceShow/hide mRNA sequence
AGAGCCATTAAGGCACTCCAAGACCTTTTAAAGTTACTTGCCACTGTGATAGTAGAAGAAAAAGAAACTATGAAATCAACAGTTTATGCCTTGAATCTTAGTGATACTGT
GCGAAGACAAGTTATAGAAGAAGAAACGTCTTATAAGATTTGGAATAAGTTGAATGAATTTACCAAATACGATATATCTGAGGAAAAGATAATAACACAATTCCCAAACC
TTGGAGAAAAGATGGGTGAAGAGAATGAAGCATTAATTCTTTTGAACTCACTACCAAAAAACTACACAGAAGTCAAAACAACAGATAAATATGACGAAGCTGTTAAGCTA
GCCCATTAA
Protein sequenceShow/hide protein sequence
RAIKALQDLLKLLATVIVEEKETMKSTVYALNLSDTVRRQVIEEETSYKIWNKLNEFTKYDISEEKIITQFPNLGEKMGEENEALILLNSLPKNYTEVKTTDKYDEAVKL
AH