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ClCG02G009000 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG02G009000
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCG_Chr02:12456653..12457600
RNA-Seq ExpressionClCG02G009000
SyntenyClCG02G009000
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.8e-0625.33Show/hide
Query:  PIFFALAKEKLITIKNAWNDETTTWNPNFCRNLRPREMESWNQLFAAWPTPIDNTGEDIIKWQLTSKG--------------------------------
        P  FAL+  K  ++K+ WN  +  W+ +  R LR  E   W+ + A+ PTP+ N G     W+L S                                  
Subjt:  PIFFALAKEKLITIKNAWNDETTTWNPNFCRNLRPREMESWNQLFAAWPTPIDNTGEDIIKWQLTSKG--------------------------------

Query:  -----------------LNIGDKCQARHPNMALSSNWCILCKNNEEMAEH
                         +N  D+ Q R PN ALS NWC +C  ++E   H
Subjt:  -----------------LNIGDKCQARHPNMALSSNWCILCKNNEEMAEH

KAA0046762.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.8e-0625Show/hide
Query:  YPIFFALAKEKLITIKNAWNDETTTWNPNFCRNLRPREMESWNQLFAAWPTPIDNTGED-----------------------------------------
        YP  FAL+ +K IT+K+AWN     W   F R L  RE   W ++    P P  N+G                                           
Subjt:  YPIFFALAKEKLITIKNAWNDETTTWNPNFCRNLRPREMESWNQLFAAWPTPIDNTGED-----------------------------------------

Query:  ---------IIKWQLTSKGLNIGDKCQARHPNMALSSNWCILCKNNEEMAEH
                    W L  + +N  +  Q R PN+ L  +WC+LCK + E   H
Subjt:  ---------IIKWQLTSKGLNIGDKCQARHPNMALSSNWCILCKNNEEMAEH

KAA0058105.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-0625Show/hide
Query:  YPIFFALAKEKLITIKNAWNDETTTWNPNFCRNLRPREMESWNQLFAAWPTPIDNTGED-----------------------------------------
        YP  FAL+ +K  +IK+ WN     W   F R L  RE+ +W ++    P P  N G                                           
Subjt:  YPIFFALAKEKLITIKNAWNDETTTWNPNFCRNLRPREMESWNQLFAAWPTPIDNTGED-----------------------------------------

Query:  ---------IIKWQLTSKGLNIGDKCQARHPNMALSSNWCILCKNNEEMAEH
                    W L  + LN  +  Q R PN  L  NWC+LCK + E   H
Subjt:  ---------IIKWQLTSKGLNIGDKCQARHPNMALSSNWCILCKNNEEMAEH

KAA0058554.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-0626.32Show/hide
Query:  YPIFFALAKEKLITIKNAWNDETTTWNPNFCRNLRPREMESWNQLFAAWPTPIDNTGE--------------------------------------DII-
        YP  FAL+ +K  +IK+ WN     W   F R L  RE+ +W ++    P P  N G                                       D+I 
Subjt:  YPIFFALAKEKLITIKNAWNDETTTWNPNFCRNLRPREMESWNQLFAAWPTPIDNTGE--------------------------------------DII-

Query:  -----------KWQLTSKGLNIGDKCQARHPNMALSSNWCILCKNNEEMAEH
                    W L  + LN  +  Q R PN  L  NWC+LCK   E   H
Subjt:  -----------KWQLTSKGLNIGDKCQARHPNMALSSNWCILCKNNEEMAEH

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.8e-0625.33Show/hide
Query:  PIFFALAKEKLITIKNAWNDETTTWNPNFCRNLRPREMESWNQLFAAWPTPIDNTGEDIIKWQLTSKG--------------------------------
        P  FAL+  K  ++K+ WN  +  W+ +  R LR  E   W+ + A+ PTP+ N G     W+L S                                  
Subjt:  PIFFALAKEKLITIKNAWNDETTTWNPNFCRNLRPREMESWNQLFAAWPTPIDNTGEDIIKWQLTSKG--------------------------------

Query:  -----------------LNIGDKCQARHPNMALSSNWCILCKNNEEMAEH
                         +N  D+ Q R PN ALS NWC +C  ++E   H
Subjt:  -----------------LNIGDKCQARHPNMALSSNWCILCKNNEEMAEH

TrEMBL top hitse value%identityAlignment
A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein1.3e-0625.33Show/hide
Query:  PIFFALAKEKLITIKNAWNDETTTWNPNFCRNLRPREMESWNQLFAAWPTPIDNTGEDIIKWQLTSKG--------------------------------
        P  FAL+  K  ++K+ WN  +  W+ +  R LR  E   W+ + A+ PTP+ N G     W+L S                                  
Subjt:  PIFFALAKEKLITIKNAWNDETTTWNPNFCRNLRPREMESWNQLFAAWPTPIDNTGEDIIKWQLTSKG--------------------------------

Query:  -----------------LNIGDKCQARHPNMALSSNWCILCKNNEEMAEH
                         +N  D+ Q R PN ALS NWC +C  ++E   H
Subjt:  -----------------LNIGDKCQARHPNMALSSNWCILCKNNEEMAEH

A0A5A7TTK1 LINE-1 retrotransposable element ORF2 protein1.3e-0625Show/hide
Query:  YPIFFALAKEKLITIKNAWNDETTTWNPNFCRNLRPREMESWNQLFAAWPTPIDNTGED-----------------------------------------
        YP  FAL+ +K IT+K+AWN     W   F R L  RE   W ++    P P  N+G                                           
Subjt:  YPIFFALAKEKLITIKNAWNDETTTWNPNFCRNLRPREMESWNQLFAAWPTPIDNTGED-----------------------------------------

Query:  ---------IIKWQLTSKGLNIGDKCQARHPNMALSSNWCILCKNNEEMAEH
                    W L  + +N  +  Q R PN+ L  +WC+LCK + E   H
Subjt:  ---------IIKWQLTSKGLNIGDKCQARHPNMALSSNWCILCKNNEEMAEH

A0A5A7UTS4 LINE-1 retrotransposable element ORF2 protein6.0e-0726.32Show/hide
Query:  YPIFFALAKEKLITIKNAWNDETTTWNPNFCRNLRPREMESWNQLFAAWPTPIDNTGE--------------------------------------DII-
        YP  FAL+ +K  +IK+ WN     W   F R L  RE+ +W ++    P P  N G                                       D+I 
Subjt:  YPIFFALAKEKLITIKNAWNDETTTWNPNFCRNLRPREMESWNQLFAAWPTPIDNTGE--------------------------------------DII-

Query:  -----------KWQLTSKGLNIGDKCQARHPNMALSSNWCILCKNNEEMAEH
                    W L  + LN  +  Q R PN  L  NWC+LCK   E   H
Subjt:  -----------KWQLTSKGLNIGDKCQARHPNMALSSNWCILCKNNEEMAEH

A0A5A7UWW1 LINE-1 retrotransposable element ORF2 protein7.9e-0725Show/hide
Query:  YPIFFALAKEKLITIKNAWNDETTTWNPNFCRNLRPREMESWNQLFAAWPTPIDNTGED-----------------------------------------
        YP  FAL+ +K  +IK+ WN     W   F R L  RE+ +W ++    P P  N G                                           
Subjt:  YPIFFALAKEKLITIKNAWNDETTTWNPNFCRNLRPREMESWNQLFAAWPTPIDNTGED-----------------------------------------

Query:  ---------IIKWQLTSKGLNIGDKCQARHPNMALSSNWCILCKNNEEMAEH
                    W L  + LN  +  Q R PN  L  NWC+LCK + E   H
Subjt:  ---------IIKWQLTSKGLNIGDKCQARHPNMALSSNWCILCKNNEEMAEH

A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein1.3e-0625.33Show/hide
Query:  PIFFALAKEKLITIKNAWNDETTTWNPNFCRNLRPREMESWNQLFAAWPTPIDNTGEDIIKWQLTSKG--------------------------------
        P  FAL+  K  ++K+ WN  +  W+ +  R LR  E   W+ + A+ PTP+ N G     W+L S                                  
Subjt:  PIFFALAKEKLITIKNAWNDETTTWNPNFCRNLRPREMESWNQLFAAWPTPIDNTGEDIIKWQLTSKG--------------------------------

Query:  -----------------LNIGDKCQARHPNMALSSNWCILCKNNEEMAEH
                         +N  D+ Q R PN ALS NWC +C  ++E   H
Subjt:  -----------------LNIGDKCQARHPNMALSSNWCILCKNNEEMAEH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAGTCTCCCCAGAATCCATCCCTACAATTGGTAAATACTCGAGCTCTAAGGCCCCCTGGTTCCATATTAGAAAGCTTGGCGATGATATCAGTTGCAAAG
TATCCCATATTTTTTGCACTGGCTAAGGAGAAGCTTATTACCATAAAGAACGCTTGGAATGATGAAACTACAACATGGAATCCAAATTTCTGCAGGAACCTTCGA
CCTCGTGAGATGGAATCTTGGAATCAGCTGTTTGCTGCTTGGCCAACCCCAATTGATAACACTGGAGAAGACATCATCAAATGGCAACTGACTTCGAAGGGTCTC
AATATAGGTGATAAATGTCAAGCCCGACATCCCAATATGGCTCTCTCCTCGAATTGGTGCATCCTTTGTAAGAACAACGAGGAAATGGCTGAACACAATTTGATG
CAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAGTCTCCCCAGAATCCATCCCTACAATTGGTAAATACTCGAGCTCTAAGGCCCCCTGGTTCCATATTAGAAAGCTTGGCGATGATATCAGTTGCAAAG
TATCCCATATTTTTTGCACTGGCTAAGGAGAAGCTTATTACCATAAAGAACGCTTGGAATGATGAAACTACAACATGGAATCCAAATTTCTGCAGGAACCTTCGA
CCTCGTGAGATGGAATCTTGGAATCAGCTGTTTGCTGCTTGGCCAACCCCAATTGATAACACTGGAGAAGACATCATCAAATGGCAACTGACTTCGAAGGGTCTC
AATATAGGTGATAAATGTCAAGCCCGACATCCCAATATGGCTCTCTCCTCGAATTGGTGCATCCTTTGTAAGAACAACGAGGAAATGGCTGAACACAATTTGATG
CAA
Protein sequenceShow/hide protein sequence
MEKSPQNPSLQLVNTRALRPPGSILESLAMISVAKYPIFFALAKEKLITIKNAWNDETTTWNPNFCRNLRPREMESWNQLFAAWPTPIDNTGEDIIKWQLTSKGL
NIGDKCQARHPNMALSSNWCILCKNNEEMAEHNLMQ