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ClCG02G009235 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG02G009235
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotransposon protein
Genome locationCG_Chr02:13218070..13218645
RNA-Seq ExpressionClCG02G009235
SyntenyClCG02G009235
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038875070.1 uncharacterized protein LOC120067596 [Benincasa hispida]2.2e-5578.79Show/hide
Query:  MHEKVPGCALNQNTIECKVRTLKKQYNAVSKMLCQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQSSEDPHVMTS
        +HEKVPGC LNQNTI+CKVR+LKKQYNAVS+ML QS F WNEEFK VQVEREIF++WVQSHP+ KGMWNK F HYDDLSTVF +DRAVGQSSEDP+VM +
Subjt:  MHEKVPGCALNQNTIECKVRTLKKQYNAVSKMLCQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQSSEDPHVMTS

Query:  NAFREFEDEIRLGLQNCPTPDVCQTDSPSNPD
        NAFREFEDEIRLG Q+C TP+V QT+SP N D
Subjt:  NAFREFEDEIRLGLQNCPTPDVCQTDSPSNPD

XP_038880837.1 uncharacterized protein LOC120072528 [Benincasa hispida]1.0e-5583.2Show/hide
Query:  MHEKVPGCALNQNTIECKVRTLKKQYNAVSKMLCQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQSSEDPHVMTS
        +HEKVPGCALNQNTIECKVR+LKKQYNAVS+ML QSGFGWNEEFK VQVEREI D+WV+SHP+AK MWNK F HYDDLSTVFG+DR VGQSSEDP+VM +
Subjt:  MHEKVPGCALNQNTIECKVRTLKKQYNAVSKMLCQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQSSEDPHVMTS

Query:  NAFREFEDEIRLGLQNCPTPDVCQT
        NAFREFEDEIRLG Q+C TPDV QT
Subjt:  NAFREFEDEIRLGLQNCPTPDVCQT

XP_038895773.1 uncharacterized protein LOC120083935 [Benincasa hispida]3.5e-5384.17Show/hide
Query:  HEKVPGCALNQNTIECKVRTLKKQYNAVSKMLCQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQSSEDPHVMTSN
        HEKV GCALNQNTIECKVR+LKKQ NAVS+ML QSGF WNEEFK VQVEREIFD WV+SHP+AKGMWNKPFPHYDDLSTVFG+ +AVGQSSEDP+VMT+N
Subjt:  HEKVPGCALNQNTIECKVRTLKKQYNAVSKMLCQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQSSEDPHVMTSN

Query:  AFREFEDEIRLGLQNCPTPD
        AFREFEDEIRLG Q+C TP+
Subjt:  AFREFEDEIRLGLQNCPTPD

XP_038895852.1 uncharacterized protein LOC120084021 [Benincasa hispida]8.5e-4772.18Show/hide
Query:  MHEKVPGCALNQNTIECKVRTLKKQYNAVSKMLCQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQSSEDPHVMTS
        +HEKV  CALNQNTIECKVR+LKKQYNAVS+ML QSGF WNEEFK            VQSHP+AKGMWNK FPHYDDLSTVFG+DRAVGQSSE+P++M +
Subjt:  MHEKVPGCALNQNTIECKVRTLKKQYNAVSKMLCQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQSSEDPHVMTS

Query:  NAFREFEDEIRLGLQNCPTPDVCQTDSPSNPDG
        NAFREFED+IRLG Q+  TP+V QT SP N DG
Subjt:  NAFREFEDEIRLGLQNCPTPDVCQTDSPSNPDG

XP_038902479.1 uncharacterized protein At2g29880-like [Benincasa hispida]4.1e-5779.55Show/hide
Query:  MHEKVPGCALNQNTIECKVRTLKKQYNAVSKMLCQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQSSEDPHVMTS
        +HEKVPGC LNQNTIECKVR+LKKQYN VS+ML QSGF WNEEFK VQVEREIFD+WV SHP+AK MWNKPFPHYDD STVFG+DR VG+SSEDP+VM +
Subjt:  MHEKVPGCALNQNTIECKVRTLKKQYNAVSKMLCQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQSSEDPHVMTS

Query:  NAFREFEDEIRLGLQNCPTPDVCQTDSPSNPD
        NAFREFEDEIRLG Q+C TP+V QT+SP N D
Subjt:  NAFREFEDEIRLGLQNCPTPDVCQTDSPSNPD

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859531.7e-2450.86Show/hide
Query:  MHEKVPGCALNQ-NTIECKVRTLKKQYNAVSKML--CQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQSSEDPHV
        M EK+PG  + + +TI+C V++LKK Y+A+++M     SGFGWNEEF+ +  ER++FD W++SHP+AKG+ +K FP+YDDLS VFG+DRA G  SE    
Subjt:  MHEKVPGCALNQ-NTIECKVRTLKKQYNAVSKML--CQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQSSEDPHV

Query:  MTSNAFREFEDEIRLG
        + SN    F D I LG
Subjt:  MTSNAFREFEDEIRLG

A0A5A7SS81 Retrotransposon protein1.4e-2341.82Show/hide
Query:  MHEKVPGCALNQNT-IECKVRTLKKQYNAVSKM--LCQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQSSEDPHV
        M EK+PGC ++  T I+ +++TLK+ + A+++M  L  SGFGWN+E K +  ++E+FD WV+SHP+AKG  NKPFP+YD+L+ VFGRDRA G+ +E    
Subjt:  MHEKVPGCALNQNT-IECKVRTLKKQYNAVSKM--LCQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQSSEDPHV

Query:  MTSNAFREFEDEIRLGLQNCPTPDV-CQTDSPSNPDGTMKIQQTNLQVEQHLRSHLEEARGRGHR
        + SN   E+ DE  +G  N   P V  Q   PS  D  ++  + +L +E   RS   + +   HR
Subjt:  MTSNAFREFEDEIRLGLQNCPTPDV-CQTDSPSNPDGTMKIQQTNLQVEQHLRSHLEEARGRGHR

A0A5A7U0H7 Retrotransposon protein1.7e-2450.86Show/hide
Query:  MHEKVPGCALNQ-NTIECKVRTLKKQYNAVSKML--CQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQSSEDPHV
        M EK+PG  + + +TI+C V++LKK Y+A+++M     SGFGWNEEF+ +  ER++FD W++SHP+AKG+ +K FP+YDDLS VFG+DRA G  SE    
Subjt:  MHEKVPGCALNQ-NTIECKVRTLKKQYNAVSKML--CQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQSSEDPHV

Query:  MTSNAFREFEDEIRLG
        + SN    F D I LG
Subjt:  MTSNAFREFEDEIRLG

A0A5A7VCA3 Retrotransposon protein3.2e-2341.07Show/hide
Query:  MHEKVPGCALNQNT-IECKVRTLKKQYNAVSKML--CQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQSSEDPHV
        M EK+PGC +   T I+C+++TLK+ + A++KM     SGFGWN+E K +  E+E+FD WV+SHP+AKG+ NKPFP+YD+L+ VFGRDRA G+ +E    
Subjt:  MHEKVPGCALNQNT-IECKVRTLKKQYNAVSKML--CQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQSSEDPHV

Query:  MTSNAFREFEDEIRLGLQNCPTPDVCQTDSPSNPDGTMKIQQTNLQVEQHLRSHLEEARGRGHRSKLK
        + SN      D   +G  N         D PS  +  + I Q +++  +   SH  E R     SK K
Subjt:  MTSNAFREFEDEIRLGLQNCPTPDVCQTDSPSNPDGTMKIQQTNLQVEQHLRSHLEEARGRGHRSKLK

A0A5A7VKT2 Retrotransposon protein8.3e-2439.62Show/hide
Query:  MHEKVPGCALNQNT-IECKVRTLKKQYNAVSKML--CQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQSSEDPHV
        M EK+PGC +   T I+C+++TLK+ + A+++M     SGFGWN+E K +  E+E+FD WV+SHP+AKG+ NKPFP+YD+L+ VFGRDRA G+ +E    
Subjt:  MHEKVPGCALNQNT-IECKVRTLKKQYNAVSKML--CQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQSSEDPHV

Query:  MTSNAFREFEDEIRLGLQNCPTPDVCQTDSPSNPDGTMK----------IQQTNLQVEQ
        + SN      D   +G  N   P +  +       G+ +          + QTN Q+ Q
Subjt:  MTSNAFREFEDEIRLGLQNCPTPDVCQTDSPSNPDGTMK----------IQQTNLQVEQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.1 unknown protein6.3e-0827.88Show/hide
Query:  GCALNQNTIECKVRTLKKQYNAVSKMLCQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQSSEDPHVMTSNAFREF
        G   +++ ++ +   L KQYN V  +L   GF W++  + V  +  ++ +++++HP A+    KP  ++ DL  ++G   A G+ S   H +      E 
Subjt:  GCALNQNTIECKVRTLKKQYNAVSKMLCQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQSSEDPHVMTSNAFREF

Query:  EDEI
        EDEI
Subjt:  EDEI

AT2G24960.2 unknown protein2.2e-0827.38Show/hide
Query:  GCALNQNTIECKVRTLKKQYNAVSKMLCQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQ
        G   N++ ++ + + L++ YN +  +L Q+GF W+     V  + +I++ ++Q+HP A+    K  P Y +L  +FG++ + G+
Subjt:  GCALNQNTIECKVRTLKKQYNAVSKMLCQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGAGAAGGTGCCTGGGTGCGCACTTAATCAAAACACGATCGAATGCAAGGTGAGGACTCTTAAGAAACAATACAATGCAGTATCAAAGATGTTATGTCAATCGGG
ATTTGGCTGGAACGAGGAGTTCAAATTTGTCCAGGTCGAGAGGGAGATTTTCGATATCTGGGTTCAGAGTCATCCTAGCGCAAAGGGGATGTGGAACAAGCCGTTTCCCC
ATTACGATGACCTCTCCACCGTCTTTGGGAGAGATAGAGCTGTAGGACAATCAAGTGAGGACCCACACGTGATGACGAGTAATGCATTCAGAGAGTTTGAAGATGAGATT
CGACTTGGATTGCAGAACTGTCCCACACCTGATGTTTGCCAAACAGATTCACCATCAAATCCGGATGGAACGATGAAGATACAACAGACCAATCTACAGGTAGAGCAACA
CCTGCGGAGTCATCTCGAGGAAGCAAGAGGAAGAGGTCATCGTTCCAAGCTGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCATGAGAAGGTGCCTGGGTGCGCACTTAATCAAAACACGATCGAATGCAAGGTGAGGACTCTTAAGAAACAATACAATGCAGTATCAAAGATGTTATGTCAATCGGG
ATTTGGCTGGAACGAGGAGTTCAAATTTGTCCAGGTCGAGAGGGAGATTTTCGATATCTGGGTTCAGAGTCATCCTAGCGCAAAGGGGATGTGGAACAAGCCGTTTCCCC
ATTACGATGACCTCTCCACCGTCTTTGGGAGAGATAGAGCTGTAGGACAATCAAGTGAGGACCCACACGTGATGACGAGTAATGCATTCAGAGAGTTTGAAGATGAGATT
CGACTTGGATTGCAGAACTGTCCCACACCTGATGTTTGCCAAACAGATTCACCATCAAATCCGGATGGAACGATGAAGATACAACAGACCAATCTACAGGTAGAGCAACA
CCTGCGGAGTCATCTCGAGGAAGCAAGAGGAAGAGGTCATCGTTCCAAGCTGAAATGA
Protein sequenceShow/hide protein sequence
MHEKVPGCALNQNTIECKVRTLKKQYNAVSKMLCQSGFGWNEEFKFVQVEREIFDIWVQSHPSAKGMWNKPFPHYDDLSTVFGRDRAVGQSSEDPHVMTSNAFREFEDEI
RLGLQNCPTPDVCQTDSPSNPDGTMKIQQTNLQVEQHLRSHLEEARGRGHRSKLK