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ClCG02G009640 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG02G009640
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationCG_Chr02:14993030..14995318
RNA-Seq ExpressionClCG02G009640
SyntenyClCG02G009640
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035158.1 uncharacterized protein E6C27_scaffold57G002520 [Cucumis melo var. makuwa]9.3e-0742.42Show/hide
Query:  TVMNLGPYYRHLIQEFIINLPCQFSNVESLDFHSTHVQGHCFVFTAAIIIDYLDHHVDDKDTKSVP
        T+ N+GP+Y  LI+EFI+NLP +F++  S D+H+ H++G  FV + A+I  +L + VD   + S P
Subjt:  TVMNLGPYYRHLIQEFIINLPCQFSNVESLDFHSTHVQGHCFVFTAAIIIDYLDHHVDDKDTKSVP

KAA0068054.1 gag-pol polyprotein [Cucumis melo var. makuwa]9.3e-0742.42Show/hide
Query:  TVMNLGPYYRHLIQEFIINLPCQFSNVESLDFHSTHVQGHCFVFTAAIIIDYLDHHVDDKDTKSVP
        T++ +GP+Y  LI+EFI+NLP +F+N  S D+H+ H++G  FV + A+I  +L + VD   + S P
Subjt:  TVMNLGPYYRHLIQEFIINLPCQFSNVESLDFHSTHVQGHCFVFTAAIIIDYLDHHVDDKDTKSVP

TYK29236.1 uncharacterized protein E5676_scaffold1228G00270 [Cucumis melo var. makuwa]9.3e-0742.42Show/hide
Query:  TVMNLGPYYRHLIQEFIINLPCQFSNVESLDFHSTHVQGHCFVFTAAIIIDYLDHHVDDKDTKSVP
        T+ N+GP+Y  LI+EFI+NLP +F++  S D+H+ H++G  FV + A+I  +L + VD   + S P
Subjt:  TVMNLGPYYRHLIQEFIINLPCQFSNVESLDFHSTHVQGHCFVFTAAIIIDYLDHHVDDKDTKSVP

XP_008444034.1 PREDICTED: uncharacterized protein LOC103487485 [Cucumis melo]9.3e-0742.42Show/hide
Query:  TVMNLGPYYRHLIQEFIINLPCQFSNVESLDFHSTHVQGHCFVFTAAIIIDYLDHHVDDKDTKSVP
        T+ N+GP+Y  LI+EFI+NLP +F++  S D+H+ H++G  FV + A+I  +L + VD   + S P
Subjt:  TVMNLGPYYRHLIQEFIINLPCQFSNVESLDFHSTHVQGHCFVFTAAIIIDYLDHHVDDKDTKSVP

XP_038887050.1 uncharacterized protein LOC120077220 [Benincasa hispida]1.6e-0643.94Show/hide
Query:  MIPTVMNLGPYYRHLIQEFIINLPCQFSNVESLDFHSTHVQGHCFVFTAAIIIDYLDHHVDDKDTK
        ++ +V+N GPYY  L+ EF +NL  QF N  SLD+   HV  HCFVF+A +I  +L+  V +  T+
Subjt:  MIPTVMNLGPYYRHLIQEFIINLPCQFSNVESLDFHSTHVQGHCFVFTAAIIIDYLDHHVDDKDTK

TrEMBL top hitse value%identityAlignment
A0A1S3BA73 uncharacterized protein LOC1034874854.5e-0742.42Show/hide
Query:  TVMNLGPYYRHLIQEFIINLPCQFSNVESLDFHSTHVQGHCFVFTAAIIIDYLDHHVDDKDTKSVP
        T+ N+GP+Y  LI+EFI+NLP +F++  S D+H+ H++G  FV + A+I  +L + VD   + S P
Subjt:  TVMNLGPYYRHLIQEFIINLPCQFSNVESLDFHSTHVQGHCFVFTAAIIIDYLDHHVDDKDTKSVP

A0A5A7SX26 Uncharacterized protein4.5e-0742.42Show/hide
Query:  TVMNLGPYYRHLIQEFIINLPCQFSNVESLDFHSTHVQGHCFVFTAAIIIDYLDHHVDDKDTKSVP
        T+ N+GP+Y  LI+EFI+NLP +F++  S D+H+ H++G  FV + A+I  +L + VD   + S P
Subjt:  TVMNLGPYYRHLIQEFIINLPCQFSNVESLDFHSTHVQGHCFVFTAAIIIDYLDHHVDDKDTKSVP

A0A5A7VKW1 Gag-pol polyprotein4.5e-0742.42Show/hide
Query:  TVMNLGPYYRHLIQEFIINLPCQFSNVESLDFHSTHVQGHCFVFTAAIIIDYLDHHVDDKDTKSVP
        T++ +GP+Y  LI+EFI+NLP +F+N  S D+H+ H++G  FV + A+I  +L + VD   + S P
Subjt:  TVMNLGPYYRHLIQEFIINLPCQFSNVESLDFHSTHVQGHCFVFTAAIIIDYLDHHVDDKDTKSVP

A0A5D3CUA7 Uncharacterized protein1.3e-0640.58Show/hide
Query:  MIPTVMNLGPYYRHLIQEFIINLPCQFSNVESLDFHSTHVQGHCFVFTAAIIIDYLDHHVDDKDTKSVP
        +I T+ N+GP+Y  LI+EFIINLP  F++  SLD+ + H++G  FV +  +I  +L++ +D   + S P
Subjt:  MIPTVMNLGPYYRHLIQEFIINLPCQFSNVESLDFHSTHVQGHCFVFTAAIIIDYLDHHVDDKDTKSVP

A0A5D3E001 Uncharacterized protein4.5e-0742.42Show/hide
Query:  TVMNLGPYYRHLIQEFIINLPCQFSNVESLDFHSTHVQGHCFVFTAAIIIDYLDHHVDDKDTKSVP
        T+ N+GP+Y  LI+EFI+NLP +F++  S D+H+ H++G  FV + A+I  +L + VD   + S P
Subjt:  TVMNLGPYYRHLIQEFIINLPCQFSNVESLDFHSTHVQGHCFVFTAAIIIDYLDHHVDDKDTKSVP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCCTACTGTTATGAATCTTGGCCCTTACTACCGCCATTTGATTCAGGAATTCATAATTAACTTACCATGTCAATTCAGTAATGTTGAAAGCCTTGATTTTCATAG
TACTCATGTTCAAGGTCATTGTTTCGTCTTTACTGCTGCTATTATCATCGATTATTTGGATCATCATGTGGATGACAAGGACACTAAGAGTGTTCCCCACCAAGCGTTTG
TAAACTATTCTTTCAAGCAGCATTATGCATGTTCTAGCACTAGCGAGGATTGTACTTCTGGTAGGCAAGATGATGCTGATGCGAGTGGTGGTTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTCCTACTGTTATGAATCTTGGCCCTTACTACCGCCATTTGATTCAGGAATTCATAATTAACTTACCATGTCAATTCAGTAATGTTGAAAGCCTTGATTTTCATAG
TACTCATGTTCAAGGTCATTGTTTCGTCTTTACTGCTGCTATTATCATCGATTATTTGGATCATCATGTGGATGACAAGGACACTAAGAGTGTTCCCCACCAAGCGTTTG
TAAACTATTCTTTCAAGCAGCATTATGCATGTTCTAGCACTAGCGAGGATTGTACTTCTGGTAGGCAAGATGATGCTGATGCGAGTGGTGGTTCTTGA
Protein sequenceShow/hide protein sequence
MIPTVMNLGPYYRHLIQEFIINLPCQFSNVESLDFHSTHVQGHCFVFTAAIIIDYLDHHVDDKDTKSVPHQAFVNYSFKQHYACSSTSEDCTSGRQDDADASGGS