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ClCG02G009700 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG02G009700
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionCUE domain-containing protein
Genome locationCG_Chr02:15165109..15167932
RNA-Seq ExpressionClCG02G009700
SyntenyClCG02G009700
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0043130 - ubiquitin binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8537847.1 hypothetical protein F0562_027573 [Nyssa sinensis]1.5e-0475.61Show/hide
Query:  VIVGEYELSRRVFMVLYRIPSSCRSSNRDPGARAADSLQFE
        VIVGE+ELS+RVFMVLYRI     SSNRDPGARAADSL  +
Subjt:  VIVGEYELSRRVFMVLYRIPSSCRSSNRDPGARAADSLQFE
KAG5612981.1 hypothetical protein H5410_024262 [Solanum commersonii]1.2e-0471.05Show/hide
Query:  VIVGEYELSRRVFMVLYRIPSSCRSSNRDPGARAADSL
        V+VGE+E  RR+FMVLYRI  + RSSNRDPGA+ ADSL
Subjt:  VIVGEYELSRRVFMVLYRIPSSCRSSNRDPGARAADSL
TYK20149.1 activating signal cointegrator 1 complex subunit 2-like isoform X1 [Cucumis melo var. makuwa]1.5e-0475.61Show/hide
Query:  VIVGEYELSRRVFMVLYRIPSSCRSSNRDPGARAADSLQFE
        VIVGEYELSRRVFM LYR+     SSNRDPGARAADSL  +
Subjt:  VIVGEYELSRRVFMVLYRIPSSCRSSNRDPGARAADSLQFE
XP_016901291.1 PREDICTED: uncharacterized protein LOC103493893 [Cucumis melo]1.5e-0475.61Show/hide
Query:  VIVGEYELSRRVFMVLYRIPSSCRSSNRDPGARAADSLQFE
        VIVGEYELSRRVFM LYR+     SSNRDPGARAADSL  +
Subjt:  VIVGEYELSRRVFMVLYRIPSSCRSSNRDPGARAADSLQFE
XP_038897592.1 activating signal cointegrator 1 complex subunit 2 isoform X1 [Benincasa hispida]5.2e-0578.05Show/hide
Query:  VIVGEYELSRRVFMVLYRIPSSCRSSNRDPGARAADSLQFE
        VIVGEYELSRRVFMVLYR+     SSNRDPGARAADSL  +
Subjt:  VIVGEYELSRRVFMVLYRIPSSCRSSNRDPGARAADSLQFE
TrEMBL top hitse value%identityAlignment
A0A1S4DZ72 uncharacterized protein LOC1034938937.3e-0575.61Show/hide
Query:  VIVGEYELSRRVFMVLYRIPSSCRSSNRDPGARAADSLQFE
        VIVGEYELSRRVFM LYR+     SSNRDPGARAADSL  +
Subjt:  VIVGEYELSRRVFMVLYRIPSSCRSSNRDPGARAADSLQFE
A0A5A7VB30 Activating signal cointegrator 1 complex subunit 2-like isoform X17.3e-0575.61Show/hide
Query:  VIVGEYELSRRVFMVLYRIPSSCRSSNRDPGARAADSLQFE
        VIVGEYELSRRVFM LYR+     SSNRDPGARAADSL  +
Subjt:  VIVGEYELSRRVFMVLYRIPSSCRSSNRDPGARAADSLQFE
A0A5B7BHE9 CUE domain-containing protein5.6e-0581.58Show/hide
Query:  VIVGEYELSRRVFMVLYRIPSSCRSSNRDPGARAADSL
        VIVGE+ELSRRVFM+LYRI     SSNRDPGARAADSL
Subjt:  VIVGEYELSRRVFMVLYRIPSSCRSSNRDPGARAADSL
A0A5D3D9H3 Activating signal cointegrator 1 complex subunit 2-like isoform X17.3e-0575.61Show/hide
Query:  VIVGEYELSRRVFMVLYRIPSSCRSSNRDPGARAADSLQFE
        VIVGEYELSRRVFM LYR+     SSNRDPGARAADSL  +
Subjt:  VIVGEYELSRRVFMVLYRIPSSCRSSNRDPGARAADSLQFE
A0A5J5B7V4 CUE domain-containing protein7.3e-0575.61Show/hide
Query:  VIVGEYELSRRVFMVLYRIPSSCRSSNRDPGARAADSLQFE
        VIVGE+ELS+RVFMVLYRI     SSNRDPGARAADSL  +
Subjt:  VIVGEYELSRRVFMVLYRIPSSCRSSNRDPGARAADSLQFE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27752.1 Ubiquitin system component Cue protein2.0e-0778.95Show/hide
Query:  VIVGEYELSRRVFMVLYRIPSSCRSSNRDPGARAADSL
        VIVGE EL RRVFMVLYRI     SSNRDPGA+AADSL
Subjt:  VIVGEYELSRRVFMVLYRIPSSCRSSNRDPGARAADSL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCTCACTACTATGCACCTCCTACGCTCACCATGAACTTTGCCGCTTATCTCGCTCCATGCCGTCGCTCAGCTTGCTCCATGCCGCCGCTTCACCTCTAAGCGCGAT
CCATGCCTCGCACAAGTCTCAGACTCATGCCCACTATCGCTTAGCTCGCTCCACACTAACACTTCACCTCTCAGCTTGTTCCACATCGTCGCAACACCACTTTCGCACCC
ACATGCCTGCTCGCCGCCATCAGAATTTTGCTGCGTTTTTTGCTGAGGTAAGGGTCATAGTTGGAGAATATGAATTAAGTCGTCGTGTTTTCATGGTATTATATCGCATA
CCTTCTTCCTGCAGGTCTTCTAATAGGGATCCTGGTGCACGAGCTGCTGATAGCCTTCAGTTTGAAAGATCATGGAGCAACCAAGAGCTGCACGTCGTGGAGAGGTTGAA
GAAGAGTCCTAGGGCAATTTCGTGCAAGGTTTTGGACGATTTCATGGTAAAACTGAAGCTGAAACAGAAGCTTCATCTGCTATTGCACAGCTCGAACCAGCGCGGAGAAA
ACTTGCAATATCTGACGAACCAGGACGAGTTAAGCCACGAAATTCTGAGAAGTGAGAACAAACAGGAAAGGAGGAAACTCTGCTGTCGGATGTCATTTGGAAGCAGTCTC
GCTGGTTTCGCTTATGCTAGTGTCGCTAGTGCCGTAACCTGTTGTGTAATTTCGTTAGTAAACTCGCTTGTAAGGACTCGTAGAAGGTACTCGGGCAACCCGCCATATTC
CTATGTGCACATAGAGGTTGTGACTTTGGGTGTGTTGAGTCTTGCTCTACCCCAACTAAGGATTGTTATCGACGTTGAGTGCGTTGAGTTTTACTCCGCCTCAGCTAAGG
ATGTTTTCGACATCGGGTGCGTTGAGTCTTGCTCCGCCCTGACTAAGGGAAAGTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGACCTCACTACTATGCACCTCCTACGCTCACCATGAACTTTGCCGCTTATCTCGCTCCATGCCGTCGCTCAGCTTGCTCCATGCCGCCGCTTCACCTCTAAGCGCGAT
CCATGCCTCGCACAAGTCTCAGACTCATGCCCACTATCGCTTAGCTCGCTCCACACTAACACTTCACCTCTCAGCTTGTTCCACATCGTCGCAACACCACTTTCGCACCC
ACATGCCTGCTCGCCGCCATCAGAATTTTGCTGCGTTTTTTGCTGAGGTAAGGGTCATAGTTGGAGAATATGAATTAAGTCGTCGTGTTTTCATGGTATTATATCGCATA
CCTTCTTCCTGCAGGTCTTCTAATAGGGATCCTGGTGCACGAGCTGCTGATAGCCTTCAGTTTGAAAGATCATGGAGCAACCAAGAGCTGCACGTCGTGGAGAGGTTGAA
GAAGAGTCCTAGGGCAATTTCGTGCAAGGTTTTGGACGATTTCATGGTAAAACTGAAGCTGAAACAGAAGCTTCATCTGCTATTGCACAGCTCGAACCAGCGCGGAGAAA
ACTTGCAATATCTGACGAACCAGGACGAGTTAAGCCACGAAATTCTGAGAAGTGAGAACAAACAGGAAAGGAGGAAACTCTGCTGTCGGATGTCATTTGGAAGCAGTCTC
GCTGGTTTCGCTTATGCTAGTGTCGCTAGTGCCGTAACCTGTTGTGTAATTTCGTTAGTAAACTCGCTTGTAAGGACTCGTAGAAGGTACTCGGGCAACCCGCCATATTC
CTATGTGCACATAGAGGTTGTGACTTTGGGTGTGTTGAGTCTTGCTCTACCCCAACTAAGGATTGTTATCGACGTTGAGTGCGTTGAGTTTTACTCCGCCTCAGCTAAGG
ATGTTTTCGACATCGGGTGCGTTGAGTCTTGCTCCGCCCTGACTAAGGGAAAGTTATGA
Protein sequenceShow/hide protein sequence
MTSLLCTSYAHHELCRLSRSMPSLSLLHAAASPLSAIHASHKSQTHAHYRLARSTLTLHLSACSTSSQHHFRTHMPARRHQNFAAFFAEVRVIVGEYELSRRVFMVLYRI
PSSCRSSNRDPGARAADSLQFERSWSNQELHVVERLKKSPRAISCKVLDDFMVKLKLKQKLHLLLHSSNQRGENLQYLTNQDELSHEILRSENKQERRKLCCRMSFGSSL
AGFAYASVASAVTCCVISLVNSLVRTRRRYSGNPPYSYVHIEVVTLGVLSLALPQLRIVIDVECVEFYSASAKDVFDIGCVESCSALTKGKL