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ClCG02G010045 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG02G010045
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionGag/pol protein
Genome locationCG_Chr02:16836115..16836396
RNA-Seq ExpressionClCG02G010045
SyntenyClCG02G010045
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025159.1 gag/pol protein [Cucumis melo var. makuwa]3.2e-2773.56Show/hide
Query:  MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKLFQHVN
        ML+Y AKD ILTGYTD DFQTDKDS+ STLGSVF LNGG +VWRS KQ CI DSTMEAEYVAA EA K+AVWLRKFL D ++  ++N
Subjt:  MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKLFQHVN
KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-2672.41Show/hide
Query:  MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKLFQHVN
        ML+Y AKD ILTGYTD DFQTDKDS+ ST GSVF LNGG +VWRS KQ CI DSTMEAEYVAA EA K+AVWLRKFL D ++  ++N
Subjt:  MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKLFQHVN
KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-2672.41Show/hide
Query:  MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKLFQHVN
        ML+Y AKD ILTGYTD DFQTDKDS+ ST GSVF LNGG +VWRS KQ CI DSTMEAEYVAA EA K+AVWLRKFL D ++  ++N
Subjt:  MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKLFQHVN
KAA0049828.1 gag/pol protein [Cucumis melo var. makuwa]4.2e-2772.41Show/hide
Query:  MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKLFQHVN
        ML+Y AKD ILTGYTD DFQTDKDS+ STLGSVF LNGG ++WRS KQ CI DSTMEAEYVAA EA K+AVWLRKFL D ++  ++N
Subjt:  MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKLFQHVN
KAA0051544.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-2673.56Show/hide
Query:  MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKLFQHVN
        M++Y AKD ILTGYTD DFQTDKDS+ ST GSV ILNGG IVWRS KQ CI DSTMEAEYVAA EATK+AVWLRKFL D ++  ++N
Subjt:  MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKLFQHVN
TrEMBL top hitse value%identityAlignment
A0A5A7SIN2 Gag/pol protein1.6e-2773.56Show/hide
Query:  MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKLFQHVN
        ML+Y AKD ILTGYTD DFQTDKDS+ STLGSVF LNGG +VWRS KQ CI DSTMEAEYVAA EA K+AVWLRKFL D ++  ++N
Subjt:  MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKLFQHVN
A0A5A7TZD0 Gag/pol protein7.7e-2772.41Show/hide
Query:  MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKLFQHVN
        ML+Y AKD ILTGYTD DFQTDKDS+ ST GSVF LNGG +VWRS KQ CI DSTMEAEYVAA EA K+AVWLRKFL D ++  ++N
Subjt:  MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKLFQHVN
A0A5A7U8A7 Gag/pol protein5.9e-2773.56Show/hide
Query:  MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKLFQHVN
        M++Y AKD ILTGYTD DFQTDKDS+ ST GSV ILNGG IVWRS KQ CI DSTMEAEYVAA EATK+AVWLRKFL D ++  ++N
Subjt:  MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKLFQHVN
A0A5A7VD16 Gag/pol protein7.7e-2771.26Show/hide
Query:  MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKLFQHVN
        ML+Y AKD ILTGYTD DFQTDKDS+ ST GSVF LNGG +VWR+ KQ CI DSTMEAEYVAA E  KKAVW RKFL D ++F ++N
Subjt:  MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKLFQHVN
A0A5D3C9Z1 Gag/pol protein2.0e-2772.41Show/hide
Query:  MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKLFQHVN
        ML+Y AKD ILTGYTD DFQTDKDS+ STLGSVF LNGG ++WRS KQ CI DSTMEAEYVAA EA K+AVWLRKFL D ++  ++N
Subjt:  MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKLFQHVN
SwissProt top hitse value%identityAlignment
P04146 Copia protein2.1e-0533.78Show/hide
Query:  AKDSILTGYTDCDFQTDKDSKNSTLGSVF-ILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLT
        A ++ + GY D D+   +  + ST G +F + +   I W + +Q+ +  S+ EAEY+A  EA ++A+WL+  LT
Subjt:  AKDSILTGYTDCDFQTDKDSKNSTLGSVF-ILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLT
P0CV72 Secreted RxLR effector protein 1614.4e-1150.79Show/hide
Query:  LTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWL
        L GY+D D+  D +S+ ST G +F LNGG + WRS KQ  +  S+ E EY+A +EAT++AVWL
Subjt:  LTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWL
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.9e-1444.58Show/hide
Query:  LLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKLFQ
        L +   D IL GYTD D   D D++ S+ G +F  +GG I W+S  Q C+  ST EAEY+AA E  K+ +WL++FL +  L Q
Subjt:  LLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKLFQ
Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.0e-0737.68Show/hide
Query:  YTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKL
        ++D  FQ+ KD++ ST G    L    I W+S KQ  +  S+ EAEY A + AT + +WL +F  + +L
Subjt:  YTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCTGTATGAGGCTAAGGATTCGATCCTTACGGGATACACAGACTGTGATTTTCAGACTGATAAAGATTCTAAAAATTCTACATTAGGATCAGTGTTTATTCTTAA
TGGAGGGACTATAGTTTGGCGTAGCACAAAACAAAGTTGCATTGTTGACTCTACCATGGAGGCAGAGTATGTAGCTGCTAATGAAGCTACTAAGAAGGCTGTTTGGCTTA
GAAAATTTTTAACAGACCAGAAGTTGTTCCAACATGTCAATGGCCATCACTCTTTATTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTCTGTATGAGGCTAAGGATTCGATCCTTACGGGATACACAGACTGTGATTTTCAGACTGATAAAGATTCTAAAAATTCTACATTAGGATCAGTGTTTATTCTTAA
TGGAGGGACTATAGTTTGGCGTAGCACAAAACAAAGTTGCATTGTTGACTCTACCATGGAGGCAGAGTATGTAGCTGCTAATGAAGCTACTAAGAAGGCTGTTTGGCTTA
GAAAATTTTTAACAGACCAGAAGTTGTTCCAACATGTCAATGGCCATCACTCTTTATTGTGA
Protein sequenceShow/hide protein sequence
MLLYEAKDSILTGYTDCDFQTDKDSKNSTLGSVFILNGGTIVWRSTKQSCIVDSTMEAEYVAANEATKKAVWLRKFLTDQKLFQHVNGHHSLL