; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG02G010355 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG02G010355
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCG_Chr02:19165764..19167142
RNA-Seq ExpressionClCG02G010355
SyntenyClCG02G010355
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041373 - Reverse transcriptase, RNase H-like domain
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ96663.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.8e-10644.63Show/hide
Query:  YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI---------------------------------------------------------
        YLLGR+FT++SD KALKFLLEQREV+PQFQ WL KLLGYDF+I                                                         
Subjt:  YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI---------------------------------------------------------

Query:  --NRGRFILALLTTFHDS---VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRV
            G++ L   T  +     +S +S  I +LL TFHDS+LGGHS FLRTYK++S EL+WKGMKED+KK+V +C ICQRNK ++  PA +LQPLPIPDR+
Subjt:  --NRGRFILALLTTFHDS---VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRV

Query:  WDDLFMDFVE-------------------------------------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG
         +D  MDF+E                                           ++R HG  +SI+S+RDKI VS+FW ELF    T +KRS  FHPQTDG
Subjt:  WDDLFMDFVE-------------------------------------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG

Query:  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKF
        QT +VN+C+ETYLRCFCNEQP +W+ +IP AE WYNTTFH     TP+  +YGRPPPPL+SYGD+KT ND +E  L +RD A+ ALKE+L +AQNRMKKF
Subjt:  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKF

Query:  ADQRRR---------------------------------FYGPYMVLGRVGAMAYKLDLPREATIHNVFHVSQFKKCVGTRDRV
        AD +RR                                 +YGPY +   +G +AY+LDLP EA+IHNVFH+SQ K  +G +  V
Subjt:  ADQRRR---------------------------------FYGPYMVLGRVGAMAYKLDLPREATIHNVFHVSQFKKCVGTRDRV

TYK15071.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.1e-10644.63Show/hide
Query:  YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI---------------------------------------------------------
        YLLGR+FT++SD KALKFLLEQREV+PQFQ WL KLLGYDF+I                                                         
Subjt:  YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI---------------------------------------------------------

Query:  --NRGRFILALLTTFHDS---VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRV
            G + L   T  +     +S +S  I +LL TFHDS+LGGHS FLRTYK++S EL+WKGMKED+KK+V +C ICQRNK ++  PA +LQPLPIPDR+
Subjt:  --NRGRFILALLTTFHDS---VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRV

Query:  WDDLFMDFVE-------------------------------------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG
         +D  MDF+E                                           ++R HG  +SI+S+RDKI VS+FW ELF    T +KRS  FHPQTDG
Subjt:  WDDLFMDFVE-------------------------------------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG

Query:  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKF
        QT +VN+C+ETYLRCFCNEQP +W+ +IP AE WYNTTFH     TP+  +YGRPPPPL+SYGD+KT ND +E  L +RD A+ ALKE+L +AQNRMKKF
Subjt:  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKF

Query:  ADQRRR---------------------------------FYGPYMVLGRVGAMAYKLDLPREATIHNVFHVSQFKKCVGTRDRV
        AD +RR                                 +YGPY ++  +G +AY+LDLP EA+IHNVFH+SQ K  +G +  V
Subjt:  ADQRRR---------------------------------FYGPYMVLGRVGAMAYKLDLPREATIHNVFHVSQFKKCVGTRDRV

TYK21035.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.8e-10644.63Show/hide
Query:  YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI---------------------------------------------------------
        YLLGR+FT++SD KALKFLLEQREV+PQFQ WL KLLGYDF+I                                                         
Subjt:  YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI---------------------------------------------------------

Query:  --NRGRFILALLTTFHDS---VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRV
            G++ L   T  +     +S +S  I +LL TFHDS+LGGHS FLRTYK++S EL+WKGMKED+KK+V +C ICQRNK ++  PA +LQPLPIPDR+
Subjt:  --NRGRFILALLTTFHDS---VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRV

Query:  WDDLFMDFVE-------------------------------------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG
         +D  MDF+E                                           ++R HG  +SI+S+RDKI VS+FW ELF    T +KRS  FHPQTDG
Subjt:  WDDLFMDFVE-------------------------------------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG

Query:  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKF
        QT +VN+C+ETYLRCFCNEQP +W+ +IP AE WYNTTFH     TP+  +YGRPPPPL+SYGD+KT ND +E  L +RD A+ ALKE+L +AQNRMKKF
Subjt:  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKF

Query:  ADQRRR---------------------------------FYGPYMVLGRVGAMAYKLDLPREATIHNVFHVSQFKKCVGTRDRV
        AD +RR                                 +YGPY +   +G +AY+LDLP EA+IHNVFH+SQ K  +G +  V
Subjt:  ADQRRR---------------------------------FYGPYMVLGRVGAMAYKLDLPREATIHNVFHVSQFKKCVGTRDRV

TYK27058.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.8e-10644.63Show/hide
Query:  YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI---------------------------------------------------------
        YLLGR+FT++SD KALKFLLEQREV+PQFQ WL KLLGYDF+I                                                         
Subjt:  YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI---------------------------------------------------------

Query:  --NRGRFILALLTTFHDS---VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRV
            G++ L   T  +     +S +S  I +LL TFHDS+LGGHS FLRTYK++S EL+WKGMKED+KK+V +C ICQRNK ++  PA +LQPLPIPDR+
Subjt:  --NRGRFILALLTTFHDS---VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRV

Query:  WDDLFMDFVE-------------------------------------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG
         +D  MDF+E                                           ++R HG  +SI+S+RDKI VS+FW ELF    T +KRS  FHPQTDG
Subjt:  WDDLFMDFVE-------------------------------------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG

Query:  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKF
        QT +VN+C+ETYLRCFCNEQP +W+ +IP AE WYNTTFH     TP+  +YGRPPPPL+SYGD+KT ND +E  L +RD A+ ALKE+L +AQNRMKKF
Subjt:  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKF

Query:  ADQRRR---------------------------------FYGPYMVLGRVGAMAYKLDLPREATIHNVFHVSQFKKCVGTRDRV
        AD +RR                                 +YGPY +   +G +AY+LDLP EA+IHNVFH+SQ K  +G +  V
Subjt:  ADQRRR---------------------------------FYGPYMVLGRVGAMAYKLDLPREATIHNVFHVSQFKKCVGTRDRV

TYK28944.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.8e-10644.63Show/hide
Query:  YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI---------------------------------------------------------
        YLLGR+FT++SD KALKFLLEQREV+PQFQ WL KLLGYDF+I                                                         
Subjt:  YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI---------------------------------------------------------

Query:  --NRGRFILALLTTFHDS---VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRV
            G++ L   T  +     +S +S  I +LL TFHDS+LGGHS FLRTYK++S EL+WKGMKED+KK+V +C ICQRNK ++  PA +LQPLPIPDR+
Subjt:  --NRGRFILALLTTFHDS---VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRV

Query:  WDDLFMDFVE-------------------------------------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG
         +D  MDF+E                                           ++R HG  +SI+S+RDKI VS+FW ELF    T +KRS  FHPQTDG
Subjt:  WDDLFMDFVE-------------------------------------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG

Query:  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKF
        QT +VN+C+ETYLRCFCNEQP +W+ +IP AE WYNTTFH     TP+  +YGRPPPPL+SYGD+KT ND +E  L +RD A+ ALKE+L +AQNRMKKF
Subjt:  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKF

Query:  ADQRRR---------------------------------FYGPYMVLGRVGAMAYKLDLPREATIHNVFHVSQFKKCVGTRDRV
        AD +RR                                 +YGPY +   +G +AY+LDLP EA+IHNVFH+SQ K  +G +  V
Subjt:  ADQRRR---------------------------------FYGPYMVLGRVGAMAYKLDLPREATIHNVFHVSQFKKCVGTRDRV

TrEMBL top hitse value%identityAlignment
A0A5D3BBH7 Ty3/gypsy retrotransposon protein1.3e-10644.63Show/hide
Query:  YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI---------------------------------------------------------
        YLLGR+FT++SD KALKFLLEQREV+PQFQ WL KLLGYDF+I                                                         
Subjt:  YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI---------------------------------------------------------

Query:  --NRGRFILALLTTFHDS---VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRV
            G++ L   T  +     +S +S  I +LL TFHDS+LGGHS FLRTYK++S EL+WKGMKED+KK+V +C ICQRNK ++  PA +LQPLPIPDR+
Subjt:  --NRGRFILALLTTFHDS---VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRV

Query:  WDDLFMDFVE-------------------------------------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG
         +D  MDF+E                                           ++R HG  +SI+S+RDKI VS+FW ELF    T +KRS  FHPQTDG
Subjt:  WDDLFMDFVE-------------------------------------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG

Query:  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKF
        QT +VN+C+ETYLRCFCNEQP +W+ +IP AE WYNTTFH     TP+  +YGRPPPPL+SYGD+KT ND +E  L +RD A+ ALKE+L +AQNRMKKF
Subjt:  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKF

Query:  ADQRRR---------------------------------FYGPYMVLGRVGAMAYKLDLPREATIHNVFHVSQFKKCVGTRDRV
        AD +RR                                 +YGPY +   +G +AY+LDLP EA+IHNVFH+SQ K  +G +  V
Subjt:  ADQRRR---------------------------------FYGPYMVLGRVGAMAYKLDLPREATIHNVFHVSQFKKCVGTRDRV

A0A5D3CT96 Ty3/gypsy retrotransposon protein1.0e-10644.63Show/hide
Query:  YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI---------------------------------------------------------
        YLLGR+FT++SD KALKFLLEQREV+PQFQ WL KLLGYDF+I                                                         
Subjt:  YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI---------------------------------------------------------

Query:  --NRGRFILALLTTFHDS---VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRV
            G + L   T  +     +S +S  I +LL TFHDS+LGGHS FLRTYK++S EL+WKGMKED+KK+V +C ICQRNK ++  PA +LQPLPIPDR+
Subjt:  --NRGRFILALLTTFHDS---VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRV

Query:  WDDLFMDFVE-------------------------------------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG
         +D  MDF+E                                           ++R HG  +SI+S+RDKI VS+FW ELF    T +KRS  FHPQTDG
Subjt:  WDDLFMDFVE-------------------------------------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG

Query:  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKF
        QT +VN+C+ETYLRCFCNEQP +W+ +IP AE WYNTTFH     TP+  +YGRPPPPL+SYGD+KT ND +E  L +RD A+ ALKE+L +AQNRMKKF
Subjt:  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKF

Query:  ADQRRR---------------------------------FYGPYMVLGRVGAMAYKLDLPREATIHNVFHVSQFKKCVGTRDRV
        AD +RR                                 +YGPY ++  +G +AY+LDLP EA+IHNVFH+SQ K  +G +  V
Subjt:  ADQRRR---------------------------------FYGPYMVLGRVGAMAYKLDLPREATIHNVFHVSQFKKCVGTRDRV

A0A5D3DWA9 Ty3/gypsy retrotransposon protein1.3e-10644.63Show/hide
Query:  YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI---------------------------------------------------------
        YLLGR+FT++SD KALKFLLEQREV+PQFQ WL KLLGYDF+I                                                         
Subjt:  YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI---------------------------------------------------------

Query:  --NRGRFILALLTTFHDS---VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRV
            G++ L   T  +     +S +S  I +LL TFHDS+LGGHS FLRTYK++S EL+WKGMKED+KK+V +C ICQRNK ++  PA +LQPLPIPDR+
Subjt:  --NRGRFILALLTTFHDS---VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRV

Query:  WDDLFMDFVE-------------------------------------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG
         +D  MDF+E                                           ++R HG  +SI+S+RDKI VS+FW ELF    T +KRS  FHPQTDG
Subjt:  WDDLFMDFVE-------------------------------------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG

Query:  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKF
        QT +VN+C+ETYLRCFCNEQP +W+ +IP AE WYNTTFH     TP+  +YGRPPPPL+SYGD+KT ND +E  L +RD A+ ALKE+L +AQNRMKKF
Subjt:  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKF

Query:  ADQRRR---------------------------------FYGPYMVLGRVGAMAYKLDLPREATIHNVFHVSQFKKCVGTRDRV
        AD +RR                                 +YGPY +   +G +AY+LDLP EA+IHNVFH+SQ K  +G +  V
Subjt:  ADQRRR---------------------------------FYGPYMVLGRVGAMAYKLDLPREATIHNVFHVSQFKKCVGTRDRV

A0A5D3DZK6 Ty3/gypsy retrotransposon protein1.3e-10644.63Show/hide
Query:  YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI---------------------------------------------------------
        YLLGR+FT++SD KALKFLLEQREV+PQFQ WL KLLGYDF+I                                                         
Subjt:  YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI---------------------------------------------------------

Query:  --NRGRFILALLTTFHDS---VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRV
            G++ L   T  +     +S +S  I +LL TFHDS+LGGHS FLRTYK++S EL+WKGMKED+KK+V +C ICQRNK ++  PA +LQPLPIPDR+
Subjt:  --NRGRFILALLTTFHDS---VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRV

Query:  WDDLFMDFVE-------------------------------------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG
         +D  MDF+E                                           ++R HG  +SI+S+RDKI VS+FW ELF    T +KRS  FHPQTDG
Subjt:  WDDLFMDFVE-------------------------------------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG

Query:  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKF
        QT +VN+C+ETYLRCFCNEQP +W+ +IP AE WYNTTFH     TP+  +YGRPPPPL+SYGD+KT ND +E  L +RD A+ ALKE+L +AQNRMKKF
Subjt:  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKF

Query:  ADQRRR---------------------------------FYGPYMVLGRVGAMAYKLDLPREATIHNVFHVSQFKKCVGTRDRV
        AD +RR                                 +YGPY +   +G +AY+LDLP EA+IHNVFH+SQ K  +G +  V
Subjt:  ADQRRR---------------------------------FYGPYMVLGRVGAMAYKLDLPREATIHNVFHVSQFKKCVGTRDRV

A0A5D3E325 Ty3/gypsy retrotransposon protein1.3e-10644.63Show/hide
Query:  YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI---------------------------------------------------------
        YLLGR+FT++SD KALKFLLEQREV+PQFQ WL KLLGYDF+I                                                         
Subjt:  YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI---------------------------------------------------------

Query:  --NRGRFILALLTTFHDS---VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRV
            G++ L   T  +     +S +S  I +LL TFHDS+LGGHS FLRTYK++S EL+WKGMKED+KK+V +C ICQRNK ++  PA +LQPLPIPDR+
Subjt:  --NRGRFILALLTTFHDS---VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRV

Query:  WDDLFMDFVE-------------------------------------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG
         +D  MDF+E                                           ++R HG  +SI+S+RDKI VS+FW ELF    T +KRS  FHPQTDG
Subjt:  WDDLFMDFVE-------------------------------------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG

Query:  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKF
        QT +VN+C+ETYLRCFCNEQP +W+ +IP AE WYNTTFH     TP+  +YGRPPPPL+SYGD+KT ND +E  L +RD A+ ALKE+L +AQNRMKKF
Subjt:  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKF

Query:  ADQRRR---------------------------------FYGPYMVLGRVGAMAYKLDLPREATIHNVFHVSQFKKCVGTRDRV
        AD +RR                                 +YGPY +   +G +AY+LDLP EA+IHNVFH+SQ K  +G +  V
Subjt:  ADQRRR---------------------------------FYGPYMVLGRVGAMAYKLDLPREATIHNVFHVSQFKKCVGTRDRV

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.9e-2525.62Show/hide
Query:  WKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRVWDDLFMDFV-------------------------------------------EVIRLHG
        WKG+++ ++++V  C  CQ NK ++  P   LQP+P  +R W+ L MDF+                                            VI   G
Subjt:  WKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRVWDDLFMDFV-------------------------------------------EVIRLHG

Query:  FLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDGQTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLY----GRP
          + I+++ D I  S  W +    +   +K S  + PQTDGQT + N+ VE  LRC C+  P  W   I L +  YN   H     TP+ +++       
Subjt:  FLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDGQTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLY----GRP

Query:  PPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKFADQRRR------------------------------FYGPYMVLGRVGAMAYKLD
        P  L S+ D+   N        +  +    +KEHL     +MKK+ D + +                              F GP+ VL + G   Y+LD
Subjt:  PPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKFADQRRR------------------------------FYGPYMVLGRVGAMAYKLD

Query:  LPR--EATIHNVFHVSQFKK
        LP   +    + FHVS  +K
Subjt:  LPR--EATIHNVFHVSQFKK

P0CT35 Transposon Tf2-2 polyprotein1.9e-2525.62Show/hide
Query:  WKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRVWDDLFMDFV-------------------------------------------EVIRLHG
        WKG+++ ++++V  C  CQ NK ++  P   LQP+P  +R W+ L MDF+                                            VI   G
Subjt:  WKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRVWDDLFMDFV-------------------------------------------EVIRLHG

Query:  FLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDGQTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLY----GRP
          + I+++ D I  S  W +    +   +K S  + PQTDGQT + N+ VE  LRC C+  P  W   I L +  YN   H     TP+ +++       
Subjt:  FLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDGQTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLY----GRP

Query:  PPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKFADQRRR------------------------------FYGPYMVLGRVGAMAYKLD
        P  L S+ D+   N        +  +    +KEHL     +MKK+ D + +                              F GP+ VL + G   Y+LD
Subjt:  PPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKFADQRRR------------------------------FYGPYMVLGRVGAMAYKLD

Query:  LPR--EATIHNVFHVSQFKK
        LP   +    + FHVS  +K
Subjt:  LPR--EATIHNVFHVSQFKK

P0CT36 Transposon Tf2-3 polyprotein1.9e-2525.62Show/hide
Query:  WKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRVWDDLFMDFV-------------------------------------------EVIRLHG
        WKG+++ ++++V  C  CQ NK ++  P   LQP+P  +R W+ L MDF+                                            VI   G
Subjt:  WKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRVWDDLFMDFV-------------------------------------------EVIRLHG

Query:  FLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDGQTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLY----GRP
          + I+++ D I  S  W +    +   +K S  + PQTDGQT + N+ VE  LRC C+  P  W   I L +  YN   H     TP+ +++       
Subjt:  FLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDGQTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLY----GRP

Query:  PPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKFADQRRR------------------------------FYGPYMVLGRVGAMAYKLD
        P  L S+ D+   N        +  +    +KEHL     +MKK+ D + +                              F GP+ VL + G   Y+LD
Subjt:  PPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKFADQRRR------------------------------FYGPYMVLGRVGAMAYKLD

Query:  LPR--EATIHNVFHVSQFKK
        LP   +    + FHVS  +K
Subjt:  LPR--EATIHNVFHVSQFKK

P0CT41 Transposon Tf2-12 polyprotein1.9e-2525.62Show/hide
Query:  WKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRVWDDLFMDFV-------------------------------------------EVIRLHG
        WKG+++ ++++V  C  CQ NK ++  P   LQP+P  +R W+ L MDF+                                            VI   G
Subjt:  WKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRVWDDLFMDFV-------------------------------------------EVIRLHG

Query:  FLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDGQTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLY----GRP
          + I+++ D I  S  W +    +   +K S  + PQTDGQT + N+ VE  LRC C+  P  W   I L +  YN   H     TP+ +++       
Subjt:  FLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDGQTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLY----GRP

Query:  PPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKFADQRRR------------------------------FYGPYMVLGRVGAMAYKLD
        P  L S+ D+   N        +  +    +KEHL     +MKK+ D + +                              F GP+ VL + G   Y+LD
Subjt:  PPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKFADQRRR------------------------------FYGPYMVLGRVGAMAYKLD

Query:  LPR--EATIHNVFHVSQFKK
        LP   +    + FHVS  +K
Subjt:  LPR--EATIHNVFHVSQFKK

Q9UR07 Transposon Tf2-11 polyprotein1.9e-2525.62Show/hide
Query:  WKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRVWDDLFMDFV-------------------------------------------EVIRLHG
        WKG+++ ++++V  C  CQ NK ++  P   LQP+P  +R W+ L MDF+                                            VI   G
Subjt:  WKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRVWDDLFMDFV-------------------------------------------EVIRLHG

Query:  FLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDGQTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLY----GRP
          + I+++ D I  S  W +    +   +K S  + PQTDGQT + N+ VE  LRC C+  P  W   I L +  YN   H     TP+ +++       
Subjt:  FLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDGQTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLY----GRP

Query:  PPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKFADQRRR------------------------------FYGPYMVLGRVGAMAYKLD
        P  L S+ D+   N        +  +    +KEHL     +MKK+ D + +                              F GP+ VL + G   Y+LD
Subjt:  PPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKFADQRRR------------------------------FYGPYMVLGRVGAMAYKLD

Query:  LPR--EATIHNVFHVSQFKK
        LP   +    + FHVS  +K
Subjt:  LPR--EATIHNVFHVSQFKK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACGTGAACTTGTGGCCATTGTCCTATCCGTTCAAAAGTGGAGACTATCTATTGGGAAGGAAATTCACTGTGATTTCTGATCATAAGGCTTTAAAATTCCTTCTAGA
ACAACGAGAGGTCCGACCTCAGTTTCAACTATGGCTATTGAAACTTCTGGGGTACGACTTCAAGATCAATCGAGGTAGATTCATCCTTGCTCTTTTAACTACCTTCCATG
ACTCGGTGTCCCATAATTCTAGATTCATCCTTGCTCTTTTAACTACCTTCCATGACTCGGTGTTAGGAGGTCATTCAAGGTTCTTAAGAACTTATAAGCAGTTGTCCGAA
GAATTATATTGGAAGGGAATGAAGGAAGATGTGAAGAAGCATGTGGCAGAATGCATTATTTGTCAGAGAAACAAGTACAAATCAGTAATTCCAGCTTGGTTATTACAACC
TCTTCCAATTCCTGATCGAGTATGGGATGACCTATTTATGGATTTTGTGGAAGTTATAAGACTACATGGATTCCTAAGATCCATAGTTTCGAATAGAGATAAAATCTCTG
TCAGTAGTTTTTGGACAGAGCTTTTTGCCATACATGGCACAACTGTAAAGAGGAGTTTTGTGTTCCATCCGCAAACGGATGGCCAAACGGGAAAAGTTAATAGGTGTGTG
GAGACTTATTTACGATGCTTTTGTAATGAACAACCAAAACAGTGGTATAGCTGGATTCCTTTGGCAGAATATTGGTATAATACGACATTTCACATCTTGATAAATGCTAC
TCCTTATTCAGTGTTGTATGGACGACCCCCTCCTCCTTTGGTGTCATATGGCGATCGCAAAACAACAAATGACACATTGGAACATCCATTGATTGATAGAGACAAAGCGT
TGGTGGCTCTAAAGGAACATTTGGCTTTAGCCCAAAATAGAATGAAGAAGTTTGCTGATCAACGTCGTCGATTTTATGGACCTTATATGGTACTGGGGAGAGTGGGAGCA
ATGGCTTACAAATTGGACTTACCAAGAGAGGCCACGATCCACAATGTTTTCCATGTATCCCAGTTCAAGAAATGCGTGGGCACCCGAGACAGAGTATTATCAACCTCCTA
A
mRNA sequenceShow/hide mRNA sequence
ATGAACGTGAACTTGTGGCCATTGTCCTATCCGTTCAAAAGTGGAGACTATCTATTGGGAAGGAAATTCACTGTGATTTCTGATCATAAGGCTTTAAAATTCCTTCTAGA
ACAACGAGAGGTCCGACCTCAGTTTCAACTATGGCTATTGAAACTTCTGGGGTACGACTTCAAGATCAATCGAGGTAGATTCATCCTTGCTCTTTTAACTACCTTCCATG
ACTCGGTGTCCCATAATTCTAGATTCATCCTTGCTCTTTTAACTACCTTCCATGACTCGGTGTTAGGAGGTCATTCAAGGTTCTTAAGAACTTATAAGCAGTTGTCCGAA
GAATTATATTGGAAGGGAATGAAGGAAGATGTGAAGAAGCATGTGGCAGAATGCATTATTTGTCAGAGAAACAAGTACAAATCAGTAATTCCAGCTTGGTTATTACAACC
TCTTCCAATTCCTGATCGAGTATGGGATGACCTATTTATGGATTTTGTGGAAGTTATAAGACTACATGGATTCCTAAGATCCATAGTTTCGAATAGAGATAAAATCTCTG
TCAGTAGTTTTTGGACAGAGCTTTTTGCCATACATGGCACAACTGTAAAGAGGAGTTTTGTGTTCCATCCGCAAACGGATGGCCAAACGGGAAAAGTTAATAGGTGTGTG
GAGACTTATTTACGATGCTTTTGTAATGAACAACCAAAACAGTGGTATAGCTGGATTCCTTTGGCAGAATATTGGTATAATACGACATTTCACATCTTGATAAATGCTAC
TCCTTATTCAGTGTTGTATGGACGACCCCCTCCTCCTTTGGTGTCATATGGCGATCGCAAAACAACAAATGACACATTGGAACATCCATTGATTGATAGAGACAAAGCGT
TGGTGGCTCTAAAGGAACATTTGGCTTTAGCCCAAAATAGAATGAAGAAGTTTGCTGATCAACGTCGTCGATTTTATGGACCTTATATGGTACTGGGGAGAGTGGGAGCA
ATGGCTTACAAATTGGACTTACCAAGAGAGGCCACGATCCACAATGTTTTCCATGTATCCCAGTTCAAGAAATGCGTGGGCACCCGAGACAGAGTATTATCAACCTCCTA
A
Protein sequenceShow/hide protein sequence
MNVNLWPLSYPFKSGDYLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKINRGRFILALLTTFHDSVSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSE
ELYWKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRVWDDLFMDFVEVIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDGQTGKVNRCV
ETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKFADQRRRFYGPYMVLGRVGA
MAYKLDLPREATIHNVFHVSQFKKCVGTRDRVLSTS