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ClCG02G010560 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG02G010560
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotransposon protein, putative, Ty1-copia subclass
Genome locationCG_Chr02:20899180..20901418
RNA-Seq ExpressionClCG02G010560
SyntenyClCG02G010560
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051846.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]2.3e-1050.88Show/hide
Query:  MLPVSLNSSIEVRPLERSL-LFPLAKRNGRRRMVIRVIKLTKLQAKKASKRLMLQKEIVPIAIKIDIRSKTAPNIWQRKRRPNKNDDSAWIIDSGDTNHQ
        ML +   SSIEVRPL+ SL L  LA R+GRR+ V + IKLT L  K+A K   LQ+E V IA K DI  +T P+ WQ+KRRPNK       I  G    Q
Subjt:  MLPVSLNSSIEVRPLERSL-LFPLAKRNGRRRMVIRVIKLTKLQAKKASKRLMLQKEIVPIAIKIDIRSKTAPNIWQRKRRPNKNDDSAWIIDSGDTNHQ

Query:  QHGDGEMTLRVGTG
        Q   GEM ++VGTG
Subjt:  QHGDGEMTLRVGTG
XP_008451633.1 PREDICTED: uncharacterized protein LOC103492865 [Cucumis melo]1.2e-0643.1Show/hide
Query:  RQMLPVSLNSSIEVRPLERSL-LFPLAKRNGRRRMVIRVIKLTKLQAKKASKRLMLQKEIVPIAIKIDIRSKTAPNIWQRKRRPNKNDDSAWIIDSGDTN
        RQML +   S IE RPLE SL L  LA R+GRRR V++ IKLT L   +  K  M       +  K D R +T  + WQ++R+PNK          G ++
Subjt:  RQMLPVSLNSSIEVRPLERSL-LFPLAKRNGRRRMVIRVIKLTKLQAKKASKRLMLQKEIVPIAIKIDIRSKTAPNIWQRKRRPNKNDDSAWIIDSGDTN

Query:  HQQHGDGEMTLRVGTG
         QQ   GEMT++VGTG
Subjt:  HQQHGDGEMTLRVGTG
TrEMBL top hitse value%identityAlignment
A0A1S3BSS6 uncharacterized protein LOC1034928655.7e-0743.1Show/hide
Query:  RQMLPVSLNSSIEVRPLERSL-LFPLAKRNGRRRMVIRVIKLTKLQAKKASKRLMLQKEIVPIAIKIDIRSKTAPNIWQRKRRPNKNDDSAWIIDSGDTN
        RQML +   S IE RPLE SL L  LA R+GRRR V++ IKLT L   +  K  M       +  K D R +T  + WQ++R+PNK          G ++
Subjt:  RQMLPVSLNSSIEVRPLERSL-LFPLAKRNGRRRMVIRVIKLTKLQAKKASKRLMLQKEIVPIAIKIDIRSKTAPNIWQRKRRPNKNDDSAWIIDSGDTN

Query:  HQQHGDGEMTLRVGTG
         QQ   GEMT++VGTG
Subjt:  HQQHGDGEMTLRVGTG
A0A5D3DD10 Retrotransposon protein, putative, Ty1-copia subclass1.1e-1050.88Show/hide
Query:  MLPVSLNSSIEVRPLERSL-LFPLAKRNGRRRMVIRVIKLTKLQAKKASKRLMLQKEIVPIAIKIDIRSKTAPNIWQRKRRPNKNDDSAWIIDSGDTNHQ
        ML +   SSIEVRPL+ SL L  LA R+GRR+ V + IKLT L  K+A K   LQ+E V IA K DI  +T P+ WQ+KRRPNK       I  G    Q
Subjt:  MLPVSLNSSIEVRPLERSL-LFPLAKRNGRRRMVIRVIKLTKLQAKKASKRLMLQKEIVPIAIKIDIRSKTAPNIWQRKRRPNKNDDSAWIIDSGDTNHQ

Query:  QHGDGEMTLRVGTG
        Q   GEM ++VGTG
Subjt:  QHGDGEMTLRVGTG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCCATGCATAAAGGCAAAGGATCACATGGGGAGGCAAATGTTGCCAGTTTCTCTAAACAGTTCCATAGAGGTTCGACCTTTGGAACGAAGTCTGCTTTTTCCTCT
AGCAAAAAGAAATGGAAGAAGAAGAATGGTAATAAGGGTAATAAAACTAACCAAGCTACAAGCCAAAAAGGCAAGCAAAAGGCTAATGTTGCAAAAGGAAATTGTTCCCA
TTGCAATCAAGATTGACATTAGAAGCAAGACTGCCCCAAATATTTGGCAAAGAAAAAGAAGGCCAAACAAGAATGATGATTCTGCCTGGATAATTGATTCAGGGGATACT
AATCATCAACAACATGGGGATGGCGAGATGACCTTGCGGGTTGGAACAGGGCAGGCGCGCTGTGGCGATTTTTCCCGAGGAAATTTGCTGGCGAAGCACAGCAGGAGGCG
GTGCTCCAAAGGTTTTGTGCAGACAAATTCGCTTGGCATATGCTTGATCTCTGGAATTCGCCAACTCTGGTTGTGTGATGGGTTCTGTTGTGAGATGGATGATCGGAAGG
AAGACTTCTCTCTCGAGTTGTTTGTCTCCAGTTGTCGTATGGGAAGAACTCTGTTTTCACCTAAGAATTTTCCAAGGATTTCCAACAACCCTCTCAGTCTTCCAGTCTAC
TCTTTTATAAAGGTTGCATTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTCCATGCATAAAGGCAAAGGATCACATGGGGAGGCAAATGTTGCCAGTTTCTCTAAACAGTTCCATAGAGGTTCGACCTTTGGAACGAAGTCTGCTTTTTCCTCT
AGCAAAAAGAAATGGAAGAAGAAGAATGGTAATAAGGGTAATAAAACTAACCAAGCTACAAGCCAAAAAGGCAAGCAAAAGGCTAATGTTGCAAAAGGAAATTGTTCCCA
TTGCAATCAAGATTGACATTAGAAGCAAGACTGCCCCAAATATTTGGCAAAGAAAAAGAAGGCCAAACAAGAATGATGATTCTGCCTGGATAATTGATTCAGGGGATACT
AATCATCAACAACATGGGGATGGCGAGATGACCTTGCGGGTTGGAACAGGGCAGGCGCGCTGTGGCGATTTTTCCCGAGGAAATTTGCTGGCGAAGCACAGCAGGAGGCG
GTGCTCCAAAGGTTTTGTGCAGACAAATTCGCTTGGCATATGCTTGATCTCTGGAATTCGCCAACTCTGGTTGTGTGATGGGTTCTGTTGTGAGATGGATGATCGGAAGG
AAGACTTCTCTCTCGAGTTGTTTGTCTCCAGTTGTCGTATGGGAAGAACTCTGTTTTCACCTAAGAATTTTCCAAGGATTTCCAACAACCCTCTCAGTCTTCCAGTCTAC
TCTTTTATAAAGGTTGCATTGTAA
Protein sequenceShow/hide protein sequence
MSPCIKAKDHMGRQMLPVSLNSSIEVRPLERSLLFPLAKRNGRRRMVIRVIKLTKLQAKKASKRLMLQKEIVPIAIKIDIRSKTAPNIWQRKRRPNKNDDSAWIIDSGDT
NHQQHGDGEMTLRVGTGQARCGDFSRGNLLAKHSRRRCSKGFVQTNSLGICLISGIRQLWLCDGFCCEMDDRKEDFSLELFVSSCRMGRTLFSPKNFPRISNNPLSLPVY
SFIKVAL