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ClCG02G010840 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG02G010840
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationCG_Chr02:22118473..22119314
RNA-Seq ExpressionClCG02G010840
SyntenyClCG02G010840
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041246.1 uncharacterized protein E6C27_scaffold128G002220 [Cucumis melo var. makuwa]8.7e-1345.53Show/hide
Query:  MTNLLQTMALNQSNIGGGGQVNAVNQEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAVTLRSGRAMNELP--
        M  LL+++AL Q N G G  + A+     Q ND L+Q+QAS I+NLELQ+GQ+   +  R KGSLPSNTE P   G SGKE+CQ VTLRS R +      
Subjt:  MTNLLQTMALNQSNIGGGGQVNAVNQEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAVTLRSGRAMNELP--

Query:  ---RPENSQPTIHLSNPTTDSDP
           R   S  T  + + + DS+P
Subjt:  ---RPENSQPTIHLSNPTTDSDP

WP_217833224.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]3.5e-2276Show/hide
Query:  VNAVNQEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAVTLRSGRAMN
        + A+ +EYMQKND LMQTQAS IRNL+LQ+GQI GE KTR+KGSLPSNTE PRG GSSGKEQCQAVTLRSG+ ++
Subjt:  VNAVNQEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAVTLRSGRAMN

XP_038874882.1 uncharacterized protein LOC120067385 [Benincasa hispida]2.3e-1347.12Show/hide
Query:  GGQVNAVNQEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAVTLRSGRAMNE-LPRPENSQPTIHLSNPTTDS
        G  +  + +EY+ +ND L+++QAS IRNLE+Q+GQI  ELK R+ G LPSNT+ PR   ++GKEQC AVTLRSG+++ E    P NS P+      + D 
Subjt:  GGQVNAVNQEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAVTLRSGRAMNE-LPRPENSQPTIHLSNPTTDS

Query:  DPST
        +  T
Subjt:  DPST

XP_038885789.1 uncharacterized protein LOC120076081 [Benincasa hispida]1.3e-1151.76Show/hide
Query:  QEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAVTLRSGRAMNELP-------RPENS
        ++Y++KN+ + Q+QAS IRNLE+QIGQ+  ELK +  G+LPS++E P   G SGKEQCQA+TLRSG+    +P       RPE+S
Subjt:  QEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAVTLRSGRAMNELP-------RPENS

XP_038891676.1 uncharacterized protein LOC120081070 [Benincasa hispida]2.1e-1147.78Show/hide
Query:  GGQVNAVNQEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAVTLRSGRAMNE-LPRPENSQPT
        G  +  + +EY+ +ND L+++QAS IRNLE+Q+ QI  ELK R+ G LPSNTE P    ++GKE+C  VTL++G+A+ E    P NS P+
Subjt:  GGQVNAVNQEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAVTLRSGRAMNE-LPRPENSQPT

TrEMBL top hitse value%identityAlignment
A0A0A0KMN3 Uncharacterized protein6.5e-1455.56Show/hide
Query:  LNQSNIGGGG--QVNAVNQEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAVTL
        LNQS+        + ++ QEYMQ+ND L+Q+QA+ I+NLELQ+GQI  ++  + KG+LPSNTE+P   GSSGKE+CQAVTL
Subjt:  LNQSNIGGGG--QVNAVNQEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAVTL

A0A5A7TGS2 Uncharacterized protein4.2e-1345.53Show/hide
Query:  MTNLLQTMALNQSNIGGGGQVNAVNQEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAVTLRSGRAMNELP--
        M  LL+++AL Q N G G  + A+     Q ND L+Q+QAS I+NLELQ+GQ+   +  R KGSLPSNTE P   G SGKE+CQ VTLRS R +      
Subjt:  MTNLLQTMALNQSNIGGGGQVNAVNQEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAVTLRSGRAMNELP--

Query:  ---RPENSQPTIHLSNPTTDSDP
           R   S  T  + + + DS+P
Subjt:  ---RPENSQPTIHLSNPTTDSDP

A0A6J1DWK1 uncharacterized protein LOC1110250531.1e-1041.23Show/hide
Query:  QTMALNQSNIGGGGQVNAVNQEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAVTLRSGRAMNELPRPENSQP
        Q +  NQS  G    +  + ++YM  ND  +Q+QA+ +RNLELQ+GQ+  +LK+R  G+LPS+TEVP+      KEQC A+TLRSG+A+          P
Subjt:  QTMALNQSNIGGGGQVNAVNQEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAVTLRSGRAMNELPRPENSQP

Query:  TIHLSNPTTDSDPS
          H + PT   +P+
Subjt:  TIHLSNPTTDSDPS

A0A6J1DYG0 uncharacterized protein LOC1110257648.8e-1145.83Show/hide
Query:  QEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAVTLRSGRAMNELPRP------ENSQPTIHL-SNPTT
        +EYM + D ++Q+QA+ +RN E Q+GQ+  ELK R +GS P +TE+P+     GKEQC+AVTLRSG A +E   P       ++ PT+ +  NPTT
Subjt:  QEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAVTLRSGRAMNELPRP------ENSQPTIHL-SNPTT

A0A6J1GJ68 uncharacterized protein LOC1114543442.0e-1042.53Show/hide
Query:  QTMALNQSNIGGGGQVNAVNQEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAVTLRSGR
        Q   + Q+    G  + ++ +EYM KND ++Q+Q + ++NLE+Q+GQ+  EL+ R  G LP++TE P+     GKEQCQA+ LRSG+
Subjt:  QTMALNQSNIGGGGQVNAVNQEYMQKNDTLMQTQASFIRNLELQIGQIGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAVTLRSGR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGCCGCAGCGGGAGAACTACTGGATAAAACTTATACCGAGGCCAAGGAAATTCTCGATAGAATATCAAGAAACCATGAAGATTGGGAGGACCATGGATATAGCCGA
TCTGGCCGTAGGCAAAGCAATGCGTCAAGAGCACCTGAGCATAATAGTGTTGCTTCTCACCGCCATGACTAACCTGTTACAGACTATGGCCCTGAATCAGTCAAATATAG
GAGGCGGCGGCCAAGTGAACGCAGTGAATCAAGAATACATGCAGAAGAACGACACCTTGATGCAAACCCAGGCGTCGTTCATCAGGAACTTAGAGCTCCAGATTGGCCAG
ATCGGTGGAGAGCTTAAGACGCGGCGAAAAGGATCTCTTCCGAGCAACACCGAAGTCCCACGCGGTACGGGCAGTTCAGGAAAAGAACAATGTCAAGCTGTGACATTGCG
AAGTGGAAGAGCTATGAATGAACTTCCCCGCCCAGAGAACTCTCAACCAACAATTCATCTTTCCAATCCCACAACTGATTCTGACCCATCAACGCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCTGCCGCAGCGGGAGAACTACTGGATAAAACTTATACCGAGGCCAAGGAAATTCTCGATAGAATATCAAGAAACCATGAAGATTGGGAGGACCATGGATATAGCCGA
TCTGGCCGTAGGCAAAGCAATGCGTCAAGAGCACCTGAGCATAATAGTGTTGCTTCTCACCGCCATGACTAACCTGTTACAGACTATGGCCCTGAATCAGTCAAATATAG
GAGGCGGCGGCCAAGTGAACGCAGTGAATCAAGAATACATGCAGAAGAACGACACCTTGATGCAAACCCAGGCGTCGTTCATCAGGAACTTAGAGCTCCAGATTGGCCAG
ATCGGTGGAGAGCTTAAGACGCGGCGAAAAGGATCTCTTCCGAGCAACACCGAAGTCCCACGCGGTACGGGCAGTTCAGGAAAAGAACAATGTCAAGCTGTGACATTGCG
AAGTGGAAGAGCTATGAATGAACTTCCCCGCCCAGAGAACTCTCAACCAACAATTCATCTTTCCAATCCCACAACTGATTCTGACCCATCAACGCAATAA
Protein sequenceShow/hide protein sequence
MLPQRENYWIKLIPRPRKFSIEYQETMKIGRTMDIADLAVGKAMRQEHLSIIVLLLTAMTNLLQTMALNQSNIGGGGQVNAVNQEYMQKNDTLMQTQASFIRNLELQIGQ
IGGELKTRRKGSLPSNTEVPRGTGSSGKEQCQAVTLRSGRAMNELPRPENSQPTIHLSNPTTDSDPSTQ