; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG02G011040 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG02G011040
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionPMD domain-containing protein
Genome locationCG_Chr02:22813806..22815365
RNA-Seq ExpressionClCG02G011040
SyntenyClCG02G011040
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031751.1 hypothetical protein E6C27_scaffold506G00140 [Cucumis melo var. makuwa]1.5e-0931.25Show/hide
Query:  HKVKENFSVSTNVRGPLMVGFSGEGGVEYYINFEA--CVHIPKVFDPASYPHSVRLPWSL---------RLIILIDLVG--------NLDFAKMFCMTWI
        H    ++ + T VRGP M  FSGEG   Y+  +EA   +H           +  R+ W           R+ +  D+ G        N+ +    C T  
Subjt:  HKVKENFSVSTNVRGPLMVGFSGEGGVEYYINFEA--CVHIPKVFDPASYPHSVRLPWSL---------RLIILIDLVG--------NLDFAKMFCMTWI

Query:  RKSSTLILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGNDNGGKHIRMLE
           S L LP    TR+L    H+T  +  WWTTKHG Y E+   HLV S     ++P+  K  G++ GGK IR++E
Subjt:  RKSSTLILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGNDNGGKHIRMLE

KAA0050733.1 uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa]3.7e-1641.1Show/hide
Query:  NFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPKVFDPASYPHSV----RLPWSLRLIILIDLVGNLDFAKMFCMTWIRKS--STLILPIISSTRALN
        ++  ST++RGP MV FSGEGG +YY N EA +HI K  +P  +         +P+ L   I    + N+ +  M C   +R+S  S + LP      A  
Subjt:  NFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPKVFDPASYPHSV----RLPWSLRLIILIDLVGNLDFAKMFCMTWIRKS--STLILPIISSTRALN

Query:  LH--THITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKK
        LH   HITSHY++WW  KHG+YL+EG+Q+L+D  + SL K K +KK
Subjt:  LH--THITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKK

KAA0057575.1 hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa]2.8e-0828.42Show/hide
Query:  HKVKENFSVSTNVRGPLMVGFSGEGGVEYYINFEA--CVHIPKVFDPASYPHSVRLPWSLRL-------------------IILIDL------------V
        H    ++ +   VRGP M  FSGEGG  Y+  +EA   +H           +  R+ W   L                   +   DL            +
Subjt:  HKVKENFSVSTNVRGPLMVGFSGEGGVEYYINFEA--CVHIPKVFDPASYPHSVRLPWSLRL-------------------IILIDL------------V

Query:  GNLDFAKMFCMTWIRKSSTLILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGNDNGGKHIRMLE
         N+ +    CM      S L LP     R+L    H+T  +  WWTTKHG Y E+   HLV S+    ++P+  K  G++ GGK IR++E
Subjt:  GNLDFAKMFCMTWIRKSSTLILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGNDNGGKHIRMLE

KAA0062705.1 uncharacterized protein E6C27_scaffold382G00250 [Cucumis melo var. makuwa]2.5e-1234Show/hide
Query:  NFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPKVFDPASYPHSVRLPWSLRLIILIDLVGNLDFAKMFCMTWIRKSSTLILPIISSTRALNLHTHIT
        ++   T++RGP MV FSGEGG +YY N EA     + +   SY    ++P +   +I +                  + STL   +     A +   HIT
Subjt:  NFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPKVFDPASYPHSVRLPWSLRLIILIDLVGNLDFAKMFCMTWIRKSSTLILPIISSTRALNLHTHIT

Query:  SHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKT--GNDNGGKHI
        SHY++WW   HG+YL+EG+Q+L+D  +  L K K +KK     D+G K I
Subjt:  SHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKT--GNDNGGKHI

XP_031745312.1 uncharacterized protein LOC116405439 [Cucumis sativus]1.1e-0930.65Show/hide
Query:  NFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPK---VFDPASYPHSVR----------LPWSLRLIILI----------------------------
        ++    ++RGP MV FSGEGG +YY N EA  HI K   V   A  P   +          + W+    I I                            
Subjt:  NFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPK---VFDPASYPHSVR----------LPWSLRLIILI----------------------------

Query:  -------DLVGNLDFAKMF-----CMTWIRKS--STLILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGNDNG
               DL   +  A  F      M  IR++  S + LP+     A N  TH+TSHY+ WW  KHG+YL+EG+QHL+D  +    K K +KK  ++ G
Subjt:  -------DLVGNLDFAKMF-----CMTWIRKS--STLILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGNDNG

TrEMBL top hitse value%identityAlignment
A0A5A7SQC9 PMD domain-containing protein7.2e-1031.25Show/hide
Query:  HKVKENFSVSTNVRGPLMVGFSGEGGVEYYINFEA--CVHIPKVFDPASYPHSVRLPWSL---------RLIILIDLVG--------NLDFAKMFCMTWI
        H    ++ + T VRGP M  FSGEG   Y+  +EA   +H           +  R+ W           R+ +  D+ G        N+ +    C T  
Subjt:  HKVKENFSVSTNVRGPLMVGFSGEGGVEYYINFEA--CVHIPKVFDPASYPHSVRLPWSL---------RLIILIDLVG--------NLDFAKMFCMTWI

Query:  RKSSTLILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGNDNGGKHIRMLE
           S L LP    TR+L    H+T  +  WWTTKHG Y E+   HLV S     ++P+  K  G++ GGK IR++E
Subjt:  RKSSTLILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGNDNGGKHIRMLE

A0A5A7U4C3 Uncharacterized protein1.8e-1641.1Show/hide
Query:  NFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPKVFDPASYPHSV----RLPWSLRLIILIDLVGNLDFAKMFCMTWIRKS--STLILPIISSTRALN
        ++  ST++RGP MV FSGEGG +YY N EA +HI K  +P  +         +P+ L   I    + N+ +  M C   +R+S  S + LP      A  
Subjt:  NFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPKVFDPASYPHSV----RLPWSLRLIILIDLVGNLDFAKMFCMTWIRKS--STLILPIISSTRALN

Query:  LH--THITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKK
        LH   HITSHY++WW  KHG+YL+EG+Q+L+D  + SL K K +KK
Subjt:  LH--THITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKK

A0A5A7U4K9 Uncharacterized protein1.4e-0825.62Show/hide
Query:  HKVKENFSVSTNVRGPLMVGFSGEGGVEYYINFEA--CVHIPKVFDPASYPHSVRLPWSLRL------IILIDL-------------VGNLDFAKMFCMT
        H    ++ +ST VRGP M  FSGEGG  Y+  +EA   +H           +  R+ W   L        ++D              + +   +  +  T
Subjt:  HKVKENFSVSTNVRGPLMVGFSGEGGVEYYINFEA--CVHIPKVFDPASYPHSVRLPWSLRL------IILIDL-------------VGNLDFAKMFCMT

Query:  WIRKS-------------------------STLILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGNDNGGKHIR
        WI  S                           ++  +    R L  + H+T  +  WWTTKHG Y E+   HLV S+    ++P+  K  G++ GGK IR
Subjt:  WIRKS-------------------------STLILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGNDNGGKHIR

Query:  MLE
        ++E
Subjt:  MLE

A0A5A7UVI5 PMD domain-containing protein1.4e-0828.42Show/hide
Query:  HKVKENFSVSTNVRGPLMVGFSGEGGVEYYINFEA--CVHIPKVFDPASYPHSVRLPWSLRL-------------------IILIDL------------V
        H    ++ +   VRGP M  FSGEGG  Y+  +EA   +H           +  R+ W   L                   +   DL            +
Subjt:  HKVKENFSVSTNVRGPLMVGFSGEGGVEYYINFEA--CVHIPKVFDPASYPHSVRLPWSLRL-------------------IILIDL------------V

Query:  GNLDFAKMFCMTWIRKSSTLILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGNDNGGKHIRMLE
         N+ +    CM      S L LP     R+L    H+T  +  WWTTKHG Y E+   HLV S+    ++P+  K  G++ GGK IR++E
Subjt:  GNLDFAKMFCMTWIRKSSTLILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGNDNGGKHIRMLE

A0A5D3DAL3 PMD domain-containing protein1.2e-1234Show/hide
Query:  NFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPKVFDPASYPHSVRLPWSLRLIILIDLVGNLDFAKMFCMTWIRKSSTLILPIISSTRALNLHTHIT
        ++   T++RGP MV FSGEGG +YY N EA     + +   SY    ++P +   +I +                  + STL   +     A +   HIT
Subjt:  NFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPKVFDPASYPHSVRLPWSLRLIILIDLVGNLDFAKMFCMTWIRKSSTLILPIISSTRALNLHTHIT

Query:  SHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKT--GNDNGGKHI
        SHY++WW   HG+YL+EG+Q+L+D  +  L K K +KK     D+G K I
Subjt:  SHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKT--GNDNGGKHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCACTCCCGAATCCTAGTCAGTGCATGGATCTCTTTCCGGTTTAAGCGATTTGCGGTGAAATATCTAAAGCCTCCAACGCACAAAGTCAAAGAAAACTTCTCAGT
TTCCACGAATGTCAGGGGTCCACTAATGGTTGGATTTTCTGGCGAAGGTGGAGTCGAATACTATATTAATTTTGAAGCTTGTGTACATATTCCCAAAGTATTCGATCCTG
CTTCTTATCCTCATAGTGTGCGTCTTCCATGGTCATTGAGGCTTATAATCCTTATCGATTTGGTCGGTAACTTGGATTTTGCCAAGATGTTTTGTATGACTTGGATAAGG
AAATCCTCAACGCTAATTTTGCCAATTATATCTTCTACACGTGCATTAAACCTGCACACTCACATTACTTCCCACTATAGAAGTTGGTGGACAACAAAACATGGGAATTA
TCTTGAAGAAGGGATACAACATTTGGTAGATAGCTCATCTTTTTCTCTTGCCAAACCTAAATTTTCCAAGAAGACAGGAAATGACAATGGAGGCAAACATATTCGCATGC
TTGAAACTGGTGGGCTTACCTTTGGGCATATTAAAAAAAGTGGAAGTAATCGTCCTAGGCAGGCACAAAAGACAATGTCCATGACTGCTTCAGAGGCTTCCCATTTTTGT
GTCATCGACGTACTTTTTGATGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCACTCCCGAATCCTAGTCAGTGCATGGATCTCTTTCCGGTTTAAGCGATTTGCGGTGAAATATCTAAAGCCTCCAACGCACAAAGTCAAAGAAAACTTCTCAGT
TTCCACGAATGTCAGGGGTCCACTAATGGTTGGATTTTCTGGCGAAGGTGGAGTCGAATACTATATTAATTTTGAAGCTTGTGTACATATTCCCAAAGTATTCGATCCTG
CTTCTTATCCTCATAGTGTGCGTCTTCCATGGTCATTGAGGCTTATAATCCTTATCGATTTGGTCGGTAACTTGGATTTTGCCAAGATGTTTTGTATGACTTGGATAAGG
AAATCCTCAACGCTAATTTTGCCAATTATATCTTCTACACGTGCATTAAACCTGCACACTCACATTACTTCCCACTATAGAAGTTGGTGGACAACAAAACATGGGAATTA
TCTTGAAGAAGGGATACAACATTTGGTAGATAGCTCATCTTTTTCTCTTGCCAAACCTAAATTTTCCAAGAAGACAGGAAATGACAATGGAGGCAAACATATTCGCATGC
TTGAAACTGGTGGGCTTACCTTTGGGCATATTAAAAAAAGTGGAAGTAATCGTCCTAGGCAGGCACAAAAGACAATGTCCATGACTGCTTCAGAGGCTTCCCATTTTTGT
GTCATCGACGTACTTTTTGATGTTTGA
Protein sequenceShow/hide protein sequence
MDHSRILVSAWISFRFKRFAVKYLKPPTHKVKENFSVSTNVRGPLMVGFSGEGGVEYYINFEACVHIPKVFDPASYPHSVRLPWSLRLIILIDLVGNLDFAKMFCMTWIR
KSSTLILPIISSTRALNLHTHITSHYRSWWTTKHGNYLEEGIQHLVDSSSFSLAKPKFSKKTGNDNGGKHIRMLETGGLTFGHIKKSGSNRPRQAQKTMSMTASEASHFC
VIDVLFDV