; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG02G012247 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG02G012247
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionTy3-gypsy retrotransposon protein
Genome locationCG_Chr02:25567018..25569486
RNA-Seq ExpressionClCG02G012247
SyntenyClCG02G012247
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042128.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.3e-3568.03Show/hide
Query:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEERDYEIASLKNHIESRDA
        SE+   FE+A+NIWE+IS+  K G+VIKENPT+D+H S  ER NEEASQPN+MSVM  DV TSE+RMAELEKKVNML+KAVEERD+ IA  KNHIESRDA
Subjt:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEERDYEIASLKNHIESRDA

Query:  VESSHTPAVKNNDKEKKALQDS
         ESSHT  +KN +K K  +Q+S
Subjt:  VESSHTPAVKNNDKEKKALQDS

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]3.3e-3567.21Show/hide
Query:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEERDYEIASLKNHIESRDA
        SE+   F++A+NIWE+IS+  K G+VIKENP +D+H S SER NEE  QPN+MSVM  DV TSE+RMAELEKKVNML+KAVEERD+EIA LKNHIESRDA
Subjt:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEERDYEIASLKNHIESRDA

Query:  VESSHTPAVKNNDKEKKALQDS
         ESSHT  +KN +K K  +Q+S
Subjt:  VESSHTPAVKNNDKEKKALQDS

KAA0048375.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]7.3e-3566.39Show/hide
Query:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEERDYEIASLKNHIESRDA
        SE+   FE+A+NIWE+IS+  K G++IKENP +D+H S S+R NEEA QPN+MSVM  DV TSE+RMAELEKKVNML+KAVEERD+EIA LKNHI+SRDA
Subjt:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEERDYEIASLKNHIESRDA

Query:  VESSHTPAVKNNDKEKKALQDS
         ESSHT  +KN +K K  +Q+S
Subjt:  VESSHTPAVKNNDKEKKALQDS

KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.3e-3669.67Show/hide
Query:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEERDYEIASLKNHIESRDA
        SE+   FE+A NIWE+IS+  K G+VIKENP +D+H S SER NEEA QPN+MSVM  DV TSE+RMAELEKKVNML+KAVEERD+EIASLKNHIESRDA
Subjt:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEERDYEIASLKNHIESRDA

Query:  VESSHTPAVKNNDKEKKALQDS
        +ESSHT  +KN +K K  +Q+S
Subjt:  VESSHTPAVKNNDKEKKALQDS

TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]3.3e-3568.03Show/hide
Query:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEERDYEIASLKNHIESRDA
        SE+   FE+A+NIWE+IS+  K G+VIKENPT+D+H S  ER NEEASQPN+MSVM  DV TSE+RMAELEKKVNML+KAVEERD+ IA  KNHIESRDA
Subjt:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEERDYEIASLKNHIESRDA

Query:  VESSHTPAVKNNDKEKKALQDS
         ESSHT  +KN +K K  +Q+S
Subjt:  VESSHTPAVKNNDKEKKALQDS

TrEMBL top hitse value%identityAlignment
A0A5A7TH26 Ty3-gypsy retrotransposon protein1.6e-3568.03Show/hide
Query:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEERDYEIASLKNHIESRDA
        SE+   FE+A+NIWE+IS+  K G+VIKENPT+D+H S  ER NEEASQPN+MSVM  DV TSE+RMAELEKKVNML+KAVEERD+ IA  KNHIESRDA
Subjt:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEERDYEIASLKNHIESRDA

Query:  VESSHTPAVKNNDKEKKALQDS
         ESSHT  +KN +K K  +Q+S
Subjt:  VESSHTPAVKNNDKEKKALQDS

A0A5A7TZU9 Ribonuclease H1.6e-3567.21Show/hide
Query:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEERDYEIASLKNHIESRDA
        SE+   F++A+NIWE+IS+  K G+VIKENP +D+H S SER NEE  QPN+MSVM  DV TSE+RMAELEKKVNML+KAVEERD+EIA LKNHIESRDA
Subjt:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEERDYEIASLKNHIESRDA

Query:  VESSHTPAVKNNDKEKKALQDS
         ESSHT  +KN +K K  +Q+S
Subjt:  VESSHTPAVKNNDKEKKALQDS

A0A5A7U9H0 Ty3-gypsy retrotransposon protein6.4e-3769.67Show/hide
Query:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEERDYEIASLKNHIESRDA
        SE+   FE+A NIWE+IS+  K G+VIKENP +D+H S SER NEEA QPN+MSVM  DV TSE+RMAELEKKVNML+KAVEERD+EIASLKNHIESRDA
Subjt:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEERDYEIASLKNHIESRDA

Query:  VESSHTPAVKNNDKEKKALQDS
        +ESSHT  +KN +K K  +Q+S
Subjt:  VESSHTPAVKNNDKEKKALQDS

A0A5D3BY32 Retrotransposon protein putative ty3-gypsy sub-class3.5e-3566.39Show/hide
Query:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEERDYEIASLKNHIESRDA
        SE+   FE+A+NIWE+IS+  K G++IKENP +D+H S S+R NEEA QPN+MSVM  DV TSE+RMAELEKKVNML+KAVEERD+EIA LKNHI+SRDA
Subjt:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEERDYEIASLKNHIESRDA

Query:  VESSHTPAVKNNDKEKKALQDS
         ESSHT  +KN +K K  +Q+S
Subjt:  VESSHTPAVKNNDKEKKALQDS

A0A5D3D1E5 Ribonuclease H1.6e-3568.03Show/hide
Query:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEERDYEIASLKNHIESRDA
        SE+   FE+A+NIWE+IS+  K G+VIKENPT+D+H S  ER NEEASQPN+MSVM  DV TSE+RMAELEKKVNML+KAVEERD+ IA  KNHIESRDA
Subjt:  SEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEERDYEIASLKNHIESRDA

Query:  VESSHTPAVKNNDKEKKALQDS
         ESSHT  +KN +K K  +Q+S
Subjt:  VESSHTPAVKNNDKEKKALQDS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTCGGAAGAGCAACTTACCTTTGAGATCGCGAGAAATATATGGGAACGGATCTCAAGAGACCTGAAAGTTGGGGTCGTCATCAAAGAGAATCCTACACTTGACAA
GCATACCTCGGCTTCTGAACGACCGAACGAGGAGGCATCCCAACCAAACGTAATGTCAGTCATGACGGCCGACGTGGGAACAAGTGAAGAGAGGATGGCTGAACTTGAAA
AGAAAGTTAACATGCTACTGAAGGCAGTCGAAGAAAGAGATTATGAGATCGCATCCCTCAAGAATCATATTGAGAGTCGTGATGCGGTTGAATCAAGTCATACACCTGCC
GTCAAGAACAATGACAAAGAGAAGAAGGCTTTGCAAGATAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGTCGGAAGAGCAACTTACCTTTGAGATCGCGAGAAATATATGGGAACGGATCTCAAGAGACCTGAAAGTTGGGGTCGTCATCAAAGAGAATCCTACACTTGACAA
GCATACCTCGGCTTCTGAACGACCGAACGAGGAGGCATCCCAACCAAACGTAATGTCAGTCATGACGGCCGACGTGGGAACAAGTGAAGAGAGGATGGCTGAACTTGAAA
AGAAAGTTAACATGCTACTGAAGGCAGTCGAAGAAAGAGATTATGAGATCGCATCCCTCAAGAATCATATTGAGAGTCGTGATGCGGTTGAATCAAGTCATACACCTGCC
GTCAAGAACAATGACAAAGAGAAGAAGGCTTTGCAAGATAGTTAG
Protein sequenceShow/hide protein sequence
MQSEEQLTFEIARNIWERISRDLKVGVVIKENPTLDKHTSASERPNEEASQPNVMSVMTADVGTSEERMAELEKKVNMLLKAVEERDYEIASLKNHIESRDAVESSHTPA
VKNNDKEKKALQDS