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ClCG02G012330 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG02G012330
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionF-box protein
Genome locationCG_Chr02:25702881..25705187
RNA-Seq ExpressionClCG02G012330
SyntenyClCG02G012330
Gene Ontology termsGO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process)
GO:0019005 - SCF ubiquitin ligase complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571264.1 F-box protein, partial [Cucurbita argyrosperma subsp. sororia]1.4e-3066.67Show/hide
Query:  FFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSL
        FF+ ++R GE R   DSAAVW+ GME EPEIDRLPIDLLA IFA IT  +  +  + CGVC+KW EGVK+S+GR++SLSFAGWKMD  STARLIRH YSL
Subjt:  FFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSL

Query:  RELDM
        R+LD+
Subjt:  RELDM
KAG7015628.1 F-box protein [Cucurbita argyrosperma subsp. argyrosperma]1.8e-3064.86Show/hide
Query:  YNTTS-FFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLI
        Y+T   FF+ ++R GE R   DSAAVW+ GME EPEIDRLPIDLLA IFA IT  +  +  + CGVC+KW EGVK+S+GR++SLSFAGWKMD  STARLI
Subjt:  YNTTS-FFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLI

Query:  RHEYSLRELDM
        RH YSLR+LD+
Subjt:  RHEYSLRELDM
XP_022927966.1 F-box protein At5g67140-like isoform X1 [Cucurbita moschata]3.1e-3063.96Show/hide
Query:  YNTTS-FFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLI
        Y+T   FF+ ++R GE R   DSAAVW+ GM+ EPEIDRLPIDLLA IFA IT  +  +  + CGVC+KW EGVK+S+GR++SLSFAGWKMD  STARLI
Subjt:  YNTTS-FFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLI

Query:  RHEYSLRELDM
        RH YSLR+LD+
Subjt:  RHEYSLRELDM
XP_022985881.1 F-box protein At5g67140-like isoform X1 [Cucurbita maxima]4.5e-2963.89Show/hide
Query:  TTSFFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHE
        T  FF+ ++R GE R   DSA VW+ GME EPEIDRLPIDLLA IFA IT  +  +  + CGVC+KW EGVK+S+GR++SLSFAGWKMD  STARLI H 
Subjt:  TTSFFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHE

Query:  YSLRELDM
        YSLR+LD+
Subjt:  YSLRELDM
XP_023512668.1 F-box protein At5g67140-like isoform X1 [Cucurbita pepo subsp. pepo]5.9e-2962.16Show/hide
Query:  YNTTS-FFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLI
        Y+T   FF+  +R GE R   DSAAVW+ GM+ +PEIDRLPIDLLA IFA IT  +  +  + C VC+KW EGVK+S+GR++SLSFAGWKMD  STARLI
Subjt:  YNTTS-FFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLI

Query:  RHEYSLRELDM
        RH YSLR+LD+
Subjt:  RHEYSLRELDM
TrEMBL top hitse value%identityAlignment
A0A0A0LPU5 F-box domain-containing protein7.0e-2873.33Show/hide
Query:  DSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM
        DSA VWS  ME+EPEIDRLPIDLLA IFA IT  +  +  + CGVC+KW EGVK+S+GRRKSLSFAGWKMD  STARLIRH YSLRELD+
Subjt:  DSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM
A0A6J1EIM3 F-box protein At5g67140-like isoform X21.1e-2867Show/hide
Query:  IRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM
        +R GE R   DSAAVW+ GM+ EPEIDRLPIDLLA IFA IT  +  +  + CGVC+KW EGVK+S+GR++SLSFAGWKMD  STARLIRH YSLR+LD+
Subjt:  IRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM
A0A6J1EIZ0 F-box protein At5g67140-like isoform X11.5e-3063.96Show/hide
Query:  YNTTS-FFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLI
        Y+T   FF+ ++R GE R   DSAAVW+ GM+ EPEIDRLPIDLLA IFA IT  +  +  + CGVC+KW EGVK+S+GR++SLSFAGWKMD  STARLI
Subjt:  YNTTS-FFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLI

Query:  RHEYSLRELDM
        RH YSLR+LD+
Subjt:  RHEYSLRELDM
A0A6J1J645 F-box protein At5g67140-like isoform X22.1e-2766Show/hide
Query:  IRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM
        +R GE R   DSA VW+ GME EPEIDRLPIDLLA IFA IT  +  +  + CGVC+KW EGVK+S+GR++SLSFAGWKMD  STARLI H YSLR+LD+
Subjt:  IRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM
A0A6J1J9G2 F-box protein At5g67140-like isoform X12.2e-2963.89Show/hide
Query:  TTSFFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHE
        T  FF+ ++R GE R   DSA VW+ GME EPEIDRLPIDLLA IFA IT  +  +  + CGVC+KW EGVK+S+GR++SLSFAGWKMD  STARLI H 
Subjt:  TTSFFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHE

Query:  YSLRELDM
        YSLR+LD+
Subjt:  YSLRELDM
SwissProt top hitse value%identityAlignment
Q9FH99 F-box protein At5g671403.0e-1550.62Show/hide
Query:  MEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM
        M+ E  IDRLP+DLLA IF+  T   ++   +  GVCKKW + V  S+ RR++LSFAGWKMD  ST+RL+   ++L+ELD+
Subjt:  MEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM
Arabidopsis top hitse value%identityAlignment
AT5G67140.1 F-box/RNI-like superfamily protein2.1e-1650.62Show/hide
Query:  MEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM
        M+ E  IDRLP+DLLA IF+  T   ++   +  GVCKKW + V  S+ RR++LSFAGWKMD  ST+RL+   ++L+ELD+
Subjt:  MEVEPEIDRLPIDLLADIFATITVSAIVEKRRVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTAGAATTGAGACTAAAGTGGTGTTTGGGACCCATTTTCACGCCGAAGGACCTCGGGAAGTGCTTCGCTGGTCCCATCCGAGGATGATTGGTGCCACGTGGCAAAT
AGAGCTTGCTTTTTGTGCTTCTTTTCTCCGCCCCTTTTGTTACAACACCACAAGCTTCTTCGAATTTGAAATACGAAGTGGAGAGCAGAGGATCGTAACGGATTCGGCTG
CTGTGTGGTCGGAGGGGATGGAGGTGGAGCCGGAGATTGATCGCTTGCCGATTGATCTACTGGCTGACATTTTTGCGACGATAACGGTTTCTGCGATTGTGGAAAAACGC
AGGGTGTGCGGGGTTTGTAAGAAATGGAATGAAGGAGTTAAAATGTCTATTGGTAGAAGAAAGAGTTTGAGCTTTGCTGGTTGGAAGATGGATGGTTTCTCCACTGCTCG
CCTTATTCGCCATGAATACAGCCTTCGAGAGCTCGACATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTAGAATTGAGACTAAAGTGGTGTTTGGGACCCATTTTCACGCCGAAGGACCTCGGGAAGTGCTTCGCTGGTCCCATCCGAGGATGATTGGTGCCACGTGGCAAAT
AGAGCTTGCTTTTTGTGCTTCTTTTCTCCGCCCCTTTTGTTACAACACCACAAGCTTCTTCGAATTTGAAATACGAAGTGGAGAGCAGAGGATCGTAACGGATTCGGCTG
CTGTGTGGTCGGAGGGGATGGAGGTGGAGCCGGAGATTGATCGCTTGCCGATTGATCTACTGGCTGACATTTTTGCGACGATAACGGTTTCTGCGATTGTGGAAAAACGC
AGGGTGTGCGGGGTTTGTAAGAAATGGAATGAAGGAGTTAAAATGTCTATTGGTAGAAGAAAGAGTTTGAGCTTTGCTGGTTGGAAGATGGATGGTTTCTCCACTGCTCG
CCTTATTCGCCATGAATACAGCCTTCGAGAGCTCGACATGTAATCTCTAACCATGATTTAAGTGATTCTAACCTGGTTTAAATCATTTTTGTTT
Protein sequenceShow/hide protein sequence
MFRIETKVVFGTHFHAEGPREVLRWSHPRMIGATWQIELAFCASFLRPFCYNTTSFFEFEIRSGEQRIVTDSAAVWSEGMEVEPEIDRLPIDLLADIFATITVSAIVEKR
RVCGVCKKWNEGVKMSIGRRKSLSFAGWKMDGFSTARLIRHEYSLRELDM