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ClCG02G015600 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG02G015600
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionDynein light chain 1, cytoplasmic
Genome locationCG_Chr02:29881639..29882246
RNA-Seq ExpressionClCG02G015600
SyntenyClCG02G015600
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584250.1 hypothetical protein SDJN03_20182, partial [Cucurbita argyrosperma subsp. sororia]9.7e-3996.47Show/hide
Query:  MLPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD
        M PAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFD VYGPAWHCIVG SFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD
Subjt:  MLPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD

XP_004152543.3 uncharacterized protein LOC101220241 [Cucumis sativus]2.0e-3996.47Show/hide
Query:  MLPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD
        M PAMQIHAVDCARK HDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFS+DQKLYILLFKTSVQRAD
Subjt:  MLPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD

XP_008437777.1 PREDICTED: uncharacterized protein LOC103483107 [Cucumis melo]2.0e-3996.47Show/hide
Query:  MLPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD
        M PAMQIHAVDCARK HDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFS+DQKLYILLFKTSVQRAD
Subjt:  MLPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD

XP_022924012.1 uncharacterized protein LOC111431561 [Cucurbita moschata]9.7e-3996.47Show/hide
Query:  MLPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD
        M PAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFD VYGPAWHCIVG SFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD
Subjt:  MLPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD

XP_038894695.1 uncharacterized protein LOC120083162 [Benincasa hispida]4.0e-4097.65Show/hide
Query:  MLPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD
        M PAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCI+GTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD
Subjt:  MLPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD

TrEMBL top hitse value%identityAlignment
A0A0A0LW58 Uncharacterized protein9.5e-4096.47Show/hide
Query:  MLPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD
        M PAMQIHAVDCARK HDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFS+DQKLYILLFKTSVQRAD
Subjt:  MLPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD

A0A1S3AVF4 uncharacterized protein LOC1034831079.5e-4096.47Show/hide
Query:  MLPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD
        M PAMQIHAVDCARK HDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFS+DQKLYILLFKTSVQRAD
Subjt:  MLPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD

A0A5D3BH95 Dynein light chain, type 1/29.5e-4096.47Show/hide
Query:  MLPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD
        M PAMQIHAVDCARK HDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFS+DQKLYILLFKTSVQRAD
Subjt:  MLPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD

A0A6J1E7P6 uncharacterized protein LOC1114315614.7e-3996.47Show/hide
Query:  MLPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD
        M PAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFD VYGPAWHCIVG SFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD
Subjt:  MLPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD

A0A6J1KET7 uncharacterized protein LOC1114951744.7e-3996.47Show/hide
Query:  MLPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD
        M PAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFD VYGPAWHCIVG SFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD
Subjt:  MLPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD

SwissProt top hitse value%identityAlignment
Q24117 Dynein light chain 1, cytoplasmic1.2e-1250Show/hide
Query:  MLPAMQIHAVDCARKAHDSMEKFT-SKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKT
        M   MQ  AVDCA +A   +EK+   K +A  +K+EFD  Y P WHCIVG +FGS+VTH    F+YF + Q + ILLFK+
Subjt:  MLPAMQIHAVDCARKAHDSMEKFT-SKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKT

Q3MHR3 Dynein light chain 2, cytoplasmic9.5e-1352.63Show/hide
Query:  MQIHAVDCARKAHDSMEKFT-SKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKT
        MQ  AVDCA +A   MEK+   K +A  +K+EFD  Y P WHCIVG +FGS+VTH    F+YF + Q + ILLFK+
Subjt:  MQIHAVDCARKAHDSMEKFT-SKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKT

Q78P75 Dynein light chain 2, cytoplasmic9.5e-1352.63Show/hide
Query:  MQIHAVDCARKAHDSMEKFT-SKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKT
        MQ  AVDCA +A   MEK+   K +A  +K+EFD  Y P WHCIVG +FGS+VTH    F+YF + Q + ILLFK+
Subjt:  MQIHAVDCARKAHDSMEKFT-SKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKT

Q96FJ2 Dynein light chain 2, cytoplasmic9.5e-1352.63Show/hide
Query:  MQIHAVDCARKAHDSMEKFT-SKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKT
        MQ  AVDCA +A   MEK+   K +A  +K+EFD  Y P WHCIVG +FGS+VTH    F+YF + Q + ILLFK+
Subjt:  MQIHAVDCARKAHDSMEKFT-SKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKT

Q9D0M5 Dynein light chain 2, cytoplasmic9.5e-1352.63Show/hide
Query:  MQIHAVDCARKAHDSMEKFT-SKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKT
        MQ  AVDCA +A   MEK+   K +A  +K+EFD  Y P WHCIVG +FGS+VTH    F+YF + Q + ILLFK+
Subjt:  MQIHAVDCARKAHDSMEKFT-SKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKT

Arabidopsis top hitse value%identityAlignment
AT1G23220.1 Dynein light chain type 1 family protein3.7e-2067.19Show/hide
Query:  KFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD
        K  +K LA +LK++FD  YGPAWHCIVGTSFGS+VTHS GGFLYF +D K+Y+LLFKT+V+  D
Subjt:  KFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD

AT1G52240.2 RHO guanyl-nucleotide exchange factor 114.9e-1244.59Show/hide
Query:  MQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFK
        MQ+ A+  A +A D  + F  K++A  +K+EFD  YG  W C+VG++FG F THS G F+YF + + L  L+FK
Subjt:  MQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFK

AT4G15930.1 Dynein light chain type 1 family protein2.8e-1247.37Show/hide
Query:  MQIHAVDCARKAHDSMEKFT-SKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKT
        MQ  A++ A  A    EK++  K +A ++K+EFD  +G  WHCIVG +FGS+VTH    F+YF +DQK  +LLFK+
Subjt:  MQIHAVDCARKAHDSMEKFT-SKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKT

AT4G27360.1 Dynein light chain type 1 family protein1.7e-1248.15Show/hide
Query:  MLPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSV
        M   M+  A+  A KA D  +      +A  +K+EFD  YG  W CIVGT FGSFVTH  G F++FS+   L ILLFK SV
Subjt:  MLPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSV

AT5G20110.1 Dynein light chain type 1 family protein1.6e-2670Show/hide
Query:  MQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRA
        MQ HA  CAR   DS+EKF+SK +A +LK+EFD  YGPAWHCIVG+SFGSFVTHS G F+YFSMD KLY+LLFKT V+ A
Subjt:  MQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTACCAGCTATGCAGATTCATGCTGTGGATTGTGCAAGAAAGGCTCATGATAGTATGGAGAAGTTCACTTCCAAAACTCTTGCTTTATCTCTCAAGAGGGAA
TTTGATGGGGTGTATGGTCCGGCCTGGCACTGCATCGTAGGGACAAGTTTTGGGTCTTTTGTGACTCATTCAGTTGGTGGTTTCTTATATTTCTCAATGGACCAA
AAGCTGTATATTCTATTGTTCAAAACTTCCGTACAAAGAGCTGATTGA
mRNA sequenceShow/hide mRNA sequence
CTTGTTAGTTTGAAACCAACTGTTTCTTTACTACGAAAGGGTGGGAGAAGGAGGTCATTTGCTGGTTCACAAGTTGAATTGAGTGATATTTTTGCCAAAAATGGT
GTGAAAGTGGTTTCTGTTGATATGCTACCAGCTATGCAGATTCATGCTGTGGATTGTGCAAGAAAGGCTCATGATAGTATGGAGAAGTTCACTTCCAAAACTCTT
GCTTTATCTCTCAAGAGGGAATTTGATGGGGTGTATGGTCCGGCCTGGCACTGCATCGTAGGGACAAGTTTTGGGTCTTTTGTGACTCATTCAGTTGGTGGTTTC
TTATATTTCTCAATGGACCAAAAGCTGTATATTCTATTGTTCAAAACTTCCGTACAAAGAGCTGATTGAAATTGAAGTAGATGTCCAAAACACAGCTGGGAAATC
CAATAAATTTGGCATATTAGAGTTTAAGAAAGGTAAAAGAGACCGTCCATCCGAATACTTGTACATTGATTATGATAAGAAACACACCAA
Protein sequenceShow/hide protein sequence
MLPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD