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ClCG02G019810 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG02G019810
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionMitochondrial 28S Ribosomal protein
Genome locationCG_Chr02:34488313..34490649
RNA-Seq ExpressionClCG02G019810
SyntenyClCG02G019810
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR032053 - Mitochondrial 28S ribosomal protein S34


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143137.1 uncharacterized protein LOC101207989 [Cucumis sativus]4.4e-6387.07Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        MAVANRTAI+RALDFSR SS+F+R+FS+SSPSTSSSNPNASP SS+ KRR KKKNLFEV QFLPNWGVGYHVAK+HWDEISYQITKINLYKSGTHGKAWG
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  VAHKNGTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
        +AHKNGTPI EAPKKISGVHKRCWKYIASLP  GESK+  SAEVQTS
Subjt:  VAHKNGTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
XP_008464074.1 PREDICTED: uncharacterized protein LOC103502049 [Cucumis melo]7.6e-6387.07Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        MAVANRTAI+RALDFSR SS+FIR+F++SSPSTSSSNPNASP+SS+ KRR KKKNLFEV QFLPNWGVGYHVAK+HWDEISYQITKINLYKSGTHGKAWG
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  VAHKNGTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
        +AHKNG PI EAPKKISGVHKRCWKYIASLP LGESK+  SAEVQTS
Subjt:  VAHKNGTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
XP_023007567.1 uncharacterized protein LOC111500023 [Cucurbita maxima]2.5e-5878.85Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        MAVANRT I+RALDFSR +S+FIR+FSTS+ STSSS+P+AS A+SKNKRR KKKNLFEV QFLPNWGVGYHVAKAHWDEISYQITKINLYK+GTHGKAWG
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  VAHKNGTPIAEAPKKISGVHKRCWKYIASLPSLGES---------KSNPSAEVQTS
        +AHKNG PIAEAPKKISGVHKRCWKYI SL    E+         +SNPSAEVQTS
Subjt:  VAHKNGTPIAEAPKKISGVHKRCWKYIASLPSLGES---------KSNPSAEVQTS
XP_023532313.1 uncharacterized protein LOC111794505 [Cucurbita pepo subsp. pepo]2.5e-5878.21Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        MAVANRT I+RALDFSR +S+FIR+FSTS+ STSSS+P+AS A+SKNKRR KKKNLFEV QFLPNWGVGYHVAK HWDEISYQITKINLYK+GTHGKAWG
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  VAHKNGTPIAEAPKKISGVHKRCWKYIASLPSLGES---------KSNPSAEVQTS
        +AHKNG PIAEAPKKISGVHKRCWKYI SLP   E+         +SNPSAE QTS
Subjt:  VAHKNGTPIAEAPKKISGVHKRCWKYIASLPSLGES---------KSNPSAEVQTS
XP_038900676.1 uncharacterized protein LOC120087826 [Benincasa hispida]3.1e-6490.34Show/hide
Query:  VANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWGVA
        VANRTAI+RALDFSR SSTFIR+FSTSSPSTSSSNPNAS AS+KNKRR KKKNLFEV QFLPNWGVGYHVAKAHWDEISYQITKINLYK+GTHGKAWG+A
Subjt:  VANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWGVA

Query:  HKNGTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
        HK+GTPIAEAPKKISGVHKRCWKYIASLP  GE  SNPSAEVQTS
Subjt:  HKNGTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
TrEMBL top hitse value%identityAlignment
A0A0A0KH76 Uncharacterized protein2.1e-6387.07Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        MAVANRTAI+RALDFSR SS+F+R+FS+SSPSTSSSNPNASP SS+ KRR KKKNLFEV QFLPNWGVGYHVAK+HWDEISYQITKINLYKSGTHGKAWG
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  VAHKNGTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
        +AHKNGTPI EAPKKISGVHKRCWKYIASLP  GESK+  SAEVQTS
Subjt:  VAHKNGTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
A0A1S3CKN2 uncharacterized protein LOC1035020493.7e-6387.07Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        MAVANRTAI+RALDFSR SS+FIR+F++SSPSTSSSNPNASP+SS+ KRR KKKNLFEV QFLPNWGVGYHVAK+HWDEISYQITKINLYKSGTHGKAWG
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  VAHKNGTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
        +AHKNG PI EAPKKISGVHKRCWKYIASLP LGESK+  SAEVQTS
Subjt:  VAHKNGTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
A0A5A7V0Y6 Uncharacterized protein3.7e-6387.07Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        MAVANRTAI+RALDFSR SS+FIR+F++SSPSTSSSNPNASP+SS+ KRR KKKNLFEV QFLPNWGVGYHVAK+HWDEISYQITKINLYKSGTHGKAWG
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  VAHKNGTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
        +AHKNG PI EAPKKISGVHKRCWKYIASLP LGESK+  SAEVQTS
Subjt:  VAHKNGTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
A0A6J1D4Z3 uncharacterized protein LOC1110169881.6e-5880.52Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        M+VANR AITRALDFS+ SSTFIR+FSTSSPSTSSSNPNAS ASS  KRR KKKNLFEV QFLP WGVGYHVAKAHWDEISYQITKINLYK+G HGKAWG
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  VAHKNGTPIAEAPKKISGVHKRCWKYIA------SLPSLGES-KSNPSAEVQTS
        +AHK+G PIAEAPKKISGVHKRCW+YIA      S+P+  +S +SNPSAEVQTS
Subjt:  VAHKNGTPIAEAPKKISGVHKRCWKYIA------SLPSLGES-KSNPSAEVQTS
A0A6J1KZ28 uncharacterized protein LOC1115000231.2e-5878.85Show/hide
Query:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG
        MAVANRT I+RALDFSR +S+FIR+FSTS+ STSSS+P+AS A+SKNKRR KKKNLFEV QFLPNWGVGYHVAKAHWDEISYQITKINLYK+GTHGKAWG
Subjt:  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWG

Query:  VAHKNGTPIAEAPKKISGVHKRCWKYIASLPSLGES---------KSNPSAEVQTS
        +AHKNG PIAEAPKKISGVHKRCWKYI SL    E+         +SNPSAEVQTS
Subjt:  VAHKNGTPIAEAPKKISGVHKRCWKYIASLPSLGES---------KSNPSAEVQTS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G52370.1 unknown protein2.8e-3957.72Show/hide
Query:  MPMAVANRT-AITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRRKKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKA
        M M + NR  + T  +   R S   +R+FS    + +S NP++   SSK KRRKKKNL EVAQFLPNWG+GYH+AKAHW+ ISY+ITKINLYK G HGKA
Subjt:  MPMAVANRT-AITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRRKKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKA

Query:  WGVAHKNGTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
        WG+ HK+G   AEAPKKISGVHKRCWKYI +L     + +  SA VQ +
Subjt:  WGVAHKNGTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS
AT5G58990.1 unknown protein1.3e-3958.06Show/hide
Query:  MPMAVANRTAITRALDFSRF--SSTFIRSFSTSSPSTSSSNPNASPASSKN--KRRKKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTH
        M M + NR AI+R      F  S + +R+FS ++PS +S+  + +P+S  N  KRRKKKNL EVAQFLPNWG+GYH+AKAHW+ ISY+ITKINLYK G H
Subjt:  MPMAVANRTAITRALDFSRF--SSTFIRSFSTSSPSTSSSNPNASPASSKN--KRRKKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTH

Query:  GKAWGVAHKNGTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNP---SAEVQTS
        GKAWG+ HK+G   AEAPKKISGVHKRCWKYI +L     SK+ P   +A+VQ +
Subjt:  GKAWGVAHKNGTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNP---SAEVQTS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAATGGCTGTCGCCAACAGAACTGCCATCACTCGAGCCCTAGATTTCTCCAGGTTTTCTTCTACTTTTATCAGAAGCTTCAGCACCTCTTCGCCGTCGACC
TCCTCTTCAAACCCCAATGCCTCGCCTGCTTCGAGTAAAAACAAACGGAGGAAGAAGAAGAACCTGTTCGAAGTAGCTCAGTTTTTGCCCAATTGGGGAGTAGGA
TACCATGTCGCCAAAGCTCACTGGGATGAAATATCGTACCAGATCACCAAAATCAATCTGTACAAGAGTGGCACGCACGGCAAGGCTTGGGGTGTTGCTCACAAA
AATGGCACACCCATTGCCGAAGCTCCAAAGAAAATTAGCGGAGTTCACAAGCGCTGTTGGAAGTATATCGCTAGCTTGCCGAGTTTGGGAGAAAGCAAAAGTAAC
CCATCAGCTGAAGTTCAAACTTCATGA
mRNA sequenceShow/hide mRNA sequence
AAAATTCCATTTGCCTAAACCCCGTCCCGAGCTGCGAAGTAGCGATACCAAAGCGAAGGGCAACCAAACCTAGAGACACATGCCAATGGCTGTCGCCAACAGAAC
TGCCATCACTCGAGCCCTAGATTTCTCCAGGTTTTCTTCTACTTTTATCAGAAGCTTCAGCACCTCTTCGCCGTCGACCTCCTCTTCAAACCCCAATGCCTCGCC
TGCTTCGAGTAAAAACAAACGGAGGAAGAAGAAGAACCTGTTCGAAGTAGCTCAGTTTTTGCCCAATTGGGGAGTAGGATACCATGTCGCCAAAGCTCACTGGGA
TGAAATATCGTACCAGATCACCAAAATCAATCTGTACAAGAGTGGCACGCACGGCAAGGCTTGGGGTGTTGCTCACAAAAATGGCACACCCATTGCCGAAGCTCC
AAAGAAAATTAGCGGAGTTCACAAGCGCTGTTGGAAGTATATCGCTAGCTTGCCGAGTTTGGGAGAAAGCAAAAGTAACCCATCAGCTGAAGTTCAAACTTCATG
ACTGCAGAGAAATTTGAGTTGCTGATTCTTTTTGGCCAACCTTATTTTCAGGTTCAAAGAGTTCTAGTCTCTCCAGAGTAGTAGTCCTTAAACATAGGTTTCCTT
CTGCGCTTTACTTGTTTCCGAGGTAAAAGAAAAGATCAATCATCCCGAATTAAGTATTAAACTTGTTATCTATTCTCAATTACTGGCGATTTTCGTGTTTAATAG
AGGTTGAAGAATCTTGTTGATATTTGTGAATCTGTGTGCATCTTGAAA
Protein sequenceShow/hide protein sequence
MPMAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRRKKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGTHGKAWGVAHK
NGTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS