; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG02G019970 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG02G019970
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionpumilio 2
Genome locationCG_Chr02:34583569..34584473
RNA-Seq ExpressionClCG02G019970
SyntenyClCG02G019970
Gene Ontology termsGO:0006417 - regulation of translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR001313 - Pumilio RNA-binding repeat
IPR011989 - Armadillo-like helical
IPR016024 - Armadillo-type fold
IPR033133 - Pumilio homology domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605445.1 Pumilio-like 1, partial [Cucurbita argyrosperma subsp. sororia]2.0e-55100Show/hide
Query:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
        MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
Subjt:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE

Query:  RRIAAQSSPHPSLVT
        RRIAAQSSPHPSLVT
Subjt:  RRIAAQSSPHPSLVT

XP_022148501.1 pumilio homolog 2-like [Momordica charantia]2.0e-55100Show/hide
Query:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
        MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
Subjt:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE

Query:  RRIAAQSSPHPSLVT
        RRIAAQSSPHPSLVT
Subjt:  RRIAAQSSPHPSLVT

XP_023007003.1 pumilio homolog 2-like [Cucurbita maxima]2.0e-55100Show/hide
Query:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
        MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
Subjt:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE

Query:  RRIAAQSSPHPSLVT
        RRIAAQSSPHPSLVT
Subjt:  RRIAAQSSPHPSLVT

XP_023532147.1 pumilio homolog 2-like [Cucurbita pepo subsp. pepo]2.0e-55100Show/hide
Query:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
        MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
Subjt:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE

Query:  RRIAAQSSPHPSLVT
        RRIAAQSSPHPSLVT
Subjt:  RRIAAQSSPHPSLVT

XP_038900721.1 pumilio homolog 2-like isoform X1 [Benincasa hispida]2.0e-55100Show/hide
Query:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
        MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
Subjt:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE

Query:  RRIAAQSSPHPSLVT
        RRIAAQSSPHPSLVT
Subjt:  RRIAAQSSPHPSLVT

TrEMBL top hitse value%identityAlignment
A0A0A0KC85 PUM-HD domain-containing protein9.8e-56100Show/hide
Query:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
        MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
Subjt:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE

Query:  RRIAAQSSPHPSLVT
        RRIAAQSSPHPSLVT
Subjt:  RRIAAQSSPHPSLVT

A0A5A7V3L9 Pumilio-like protein 1-like9.8e-56100Show/hide
Query:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
        MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
Subjt:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE

Query:  RRIAAQSSPHPSLVT
        RRIAAQSSPHPSLVT
Subjt:  RRIAAQSSPHPSLVT

A0A6J1D5K3 pumilio homolog 2-like9.8e-56100Show/hide
Query:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
        MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
Subjt:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE

Query:  RRIAAQSSPHPSLVT
        RRIAAQSSPHPSLVT
Subjt:  RRIAAQSSPHPSLVT

A0A6J1G5Y1 pumilio homolog 2-like9.8e-56100Show/hide
Query:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
        MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
Subjt:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE

Query:  RRIAAQSSPHPSLVT
        RRIAAQSSPHPSLVT
Subjt:  RRIAAQSSPHPSLVT

A0A6J1L6I3 pumilio homolog 2-like9.8e-56100Show/hide
Query:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
        MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
Subjt:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE

Query:  RRIAAQSSPHPSLVT
        RRIAAQSSPHPSLVT
Subjt:  RRIAAQSSPHPSLVT

SwissProt top hitse value%identityAlignment
Q9LJX4 Pumilio homolog 59.8e-2964.21Show/hide
Query:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKL
        MSQ K+ASNVVEKCL     TER+ L+ E++G ++E+  L AMMKDQFANYVVQKVLE   DQQRE+++ R+K+HL +L+KYTYGKHIVAR E+L
Subjt:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKL

Q9SS47 Pumilio homolog 42.6e-4585.19Show/hide
Query:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
        MSQQKFASNVVEKCLTFGGP ERQ+LV+EMLG TDENEPLQAMMKD F NYVVQKVLETCDDQ   LILSRIKVHLNALK+YTYGKHIVARVEKL+  GE
Subjt:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE

Query:  RRIAAQSS
        RRI   SS
Subjt:  RRIAAQSS

Q9ZW02 Pumilio homolog 34.8e-5292.79Show/hide
Query:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
        MSQQKFASNVVEKCLTFGGP ER+LLV+EMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELIL+RIKVHLNALKKYTYGKHIVARVEKLVAAGE
Subjt:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE

Query:  RRIAAQSSPHP
        RR+A QS P P
Subjt:  RRIAAQSSPHP

Q9ZW06 Pumilio homolog 29.1e-5189.38Show/hide
Query:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
        MSQQKFASNVVEKCLTFGGP ER+ LV+EMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELIL RIKVHLNALKKYTYGKHIVARVEKLVAAGE
Subjt:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE

Query:  RRIAAQSSPHPSL
        RR+A QS   P +
Subjt:  RRIAAQSSPHPSL

Q9ZW07 Pumilio homolog 12.0e-5087.61Show/hide
Query:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
        MSQQKFASNVVEKCLTFGGP ER+LLV+EMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELIL+RIKVHL ALKKYTYGKH+VAR+EKLVAAGE
Subjt:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE

Query:  RRIAAQSSPHPSL
        RR+A QS   P +
Subjt:  RRIAAQSSPHPSL

Arabidopsis top hitse value%identityAlignment
AT2G29140.1 pumilio 33.4e-5392.79Show/hide
Query:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
        MSQQKFASNVVEKCLTFGGP ER+LLV+EMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELIL+RIKVHLNALKKYTYGKHIVARVEKLVAAGE
Subjt:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE

Query:  RRIAAQSSPHP
        RR+A QS P P
Subjt:  RRIAAQSSPHP

AT2G29190.1 pumilio 26.5e-5289.38Show/hide
Query:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
        MSQQKFASNVVEKCLTFGGP ER+ LV+EMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELIL RIKVHLNALKKYTYGKHIVARVEKLVAAGE
Subjt:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE

Query:  RRIAAQSSPHPSL
        RR+A QS   P +
Subjt:  RRIAAQSSPHPSL

AT2G29190.2 pumilio 26.5e-5289.38Show/hide
Query:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
        MSQQKFASNVVEKCLTFGGP ER+ LV+EMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELIL RIKVHLNALKKYTYGKHIVARVEKLVAAGE
Subjt:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE

Query:  RRIAAQSSPHPSL
        RR+A QS   P +
Subjt:  RRIAAQSSPHPSL

AT2G29200.1 pumilio 11.4e-5187.61Show/hide
Query:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
        MSQQKFASNVVEKCLTFGGP ER+LLV+EMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELIL+RIKVHL ALKKYTYGKH+VAR+EKLVAAGE
Subjt:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE

Query:  RRIAAQSSPHPSL
        RR+A QS   P +
Subjt:  RRIAAQSSPHPSL

AT3G10360.1 pumilio 41.8e-4685.19Show/hide
Query:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE
        MSQQKFASNVVEKCLTFGGP ERQ+LV+EMLG TDENEPLQAMMKD F NYVVQKVLETCDDQ   LILSRIKVHLNALK+YTYGKHIVARVEKL+  GE
Subjt:  MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGE

Query:  RRIAAQSS
        RRI   SS
Subjt:  RRIAAQSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCAGCAGAAGTTTGCCTCTAACGTTGTCGAAAAATGCTTAACCTTTGGCGGTCCTACAGAACGGCAGCTATTGGTAAGCGAAATGCTTGGAACTACAGATGAAAA
CGAGCCCCTTCAGGCAATGATGAAAGATCAATTTGCAAACTATGTCGTCCAAAAAGTGCTCGAGACATGCGACGACCAACAGCGTGAATTGATTCTCTCCCGAATCAAAG
TTCATCTCAATGCACTGAAGAAATATACTTACGGGAAGCACATTGTTGCCCGCGTAGAGAAACTTGTTGCAGCTGGAGAAAGGAGAATTGCAGCTCAGTCTTCTCCACAC
CCTTCTTTGGTGACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTCAGCAGAAGTTTGCCTCTAACGTTGTCGAAAAATGCTTAACCTTTGGCGGTCCTACAGAACGGCAGCTATTGGTAAGCGAAATGCTTGGAACTACAGATGAAAA
CGAGCCCCTTCAGGCAATGATGAAAGATCAATTTGCAAACTATGTCGTCCAAAAAGTGCTCGAGACATGCGACGACCAACAGCGTGAATTGATTCTCTCCCGAATCAAAG
TTCATCTCAATGCACTGAAGAAATATACTTACGGGAAGCACATTGTTGCCCGCGTAGAGAAACTTGTTGCAGCTGGAGAAAGGAGAATTGCAGCTCAGTCTTCTCCACAC
CCTTCTTTGGTGACTTAGGAAAGAAAATGTGTACAGCTAACCGAAGCAACCGCCAGAGCGAGCGTCTTCGTCTCTTTCCACTCTTTTCTGTGTTTTATCATCTAGAGCAG
TAGCTCAACCTCAACCTCAACCTCTCTGTGGAGATAGGTATGAGCTGATTGAAAATAAAACAAGTTGTTTGTTTGTACTTTGGAAGGAAGCCTGTACATTTGTAGTTTAA
GCTGCTTTATACGTAGAAATCGATCAATTCCGCGGCACTGATGTTGAATGGCACCCGATTGCTGCGGACAAGATAAGAAAAGGGGGCTGCCTGCCTATACTC
Protein sequenceShow/hide protein sequence
MSQQKFASNVVEKCLTFGGPTERQLLVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSSPH
PSLVT