; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG02G019990 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG02G019990
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionnifU-like protein 3, chloroplastic
Genome locationCG_Chr02:34603625..34612051
RNA-Seq ExpressionClCG02G019990
SyntenyClCG02G019990
Gene Ontology termsGO:0016226 - iron-sulfur cluster assembly (biological process)
GO:0048564 - photosystem I assembly (biological process)
GO:0097428 - protein maturation by iron-sulfur cluster transfer (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0005506 - iron ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
GO:0060090 - molecular adaptor activity (molecular function)
InterPro domainsIPR001075 - NIF system FeS cluster assembly, NifU, C-terminal
IPR034904 - Fe-S cluster assembly domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0690139.1 hypothetical protein [Gossypium aridum]2.8e-4388.68Show/hide
Query:  SSICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFS
        S  CVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVV+LKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELN+EN+EKV   
Subjt:  SSICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFS

Query:  IQVSLL
        I+  L+
Subjt:  IQVSLL

OMP08911.1 hypothetical protein COLO4_06000 [Corchorus olitorius]2.2e-4388.68Show/hide
Query:  SSICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFS
        S  C+LPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVV+LKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEEN+EKV   
Subjt:  SSICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFS

Query:  IQVSLL
        I+  L+
Subjt:  IQVSLL

XP_004148324.1 nifU-like protein 3, chloroplastic isoform X2 [Cucumis sativus]9.7e-4494.12Show/hide
Query:  SSICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFS
        S  CVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKV   
Subjt:  SSICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFS

Query:  IQ
        I+
Subjt:  IQ

XP_027151526.1 nifU-like protein 3, chloroplastic [Coffea eugenioides]3.7e-4392.16Show/hide
Query:  SSICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFS
        S  CVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVV+LKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQI+DTETGLELNEENVEKV   
Subjt:  SSICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFS

Query:  IQ
        I+
Subjt:  IQ

XP_031737073.1 nifU-like protein 3, chloroplastic isoform X1 [Cucumis sativus]3.7e-4397.92Show/hide
Query:  SSICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEK
        S  CVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEK
Subjt:  SSICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEK

TrEMBL top hitse value%identityAlignment
A0A0A0LMF5 Uncharacterized protein4.7e-4494.12Show/hide
Query:  SSICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFS
        S  CVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKV   
Subjt:  SSICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFS

Query:  IQ
        I+
Subjt:  IQ

A0A1R3KPA7 Uncharacterized protein1.0e-4388.68Show/hide
Query:  SSICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFS
        S  C+LPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVV+LKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEEN+EKV   
Subjt:  SSICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFS

Query:  IQVSLL
        I+  L+
Subjt:  IQVSLL

A0A5B7BDV3 Uncharacterized protein1.4e-4392.16Show/hide
Query:  SSICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFS
        S  CVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVV+LKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQI+DTETGLELNEENVEKV   
Subjt:  SSICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFS

Query:  IQ
        I+
Subjt:  IQ

A0A6P6SA85 nifU-like protein 3, chloroplastic isoform X11.8e-4392.16Show/hide
Query:  SSICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFS
        S  CVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVV+LKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQI+DTETGLELNEENVEKV   
Subjt:  SSICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFS

Query:  IQ
        I+
Subjt:  IQ

A0A7J8XTU7 Uncharacterized protein1.4e-4388.68Show/hide
Query:  SSICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFS
        S  CVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVV+LKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELN+EN+EKV   
Subjt:  SSICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFS

Query:  IQVSLL
        I+  L+
Subjt:  IQVSLL

SwissProt top hitse value%identityAlignment
O32119 Putative nitrogen fixation protein YutI5.8e-1553.52Show/hide
Query:  EENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQI
        +E V++VLD++RP L+ DGG+  L ++D  +V L+L GACGSCPSST+TLK GIE  L +++P ++EVEQ+
Subjt:  EENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQI

P33179 Nitrogen fixation protein NifU (Fragment)1.2e-1562.32Show/hide
Query:  VEKVLD-EVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQI
        ++KVLD EVRP L+ADGG+V L+++DG +V + LQGACGSCPSST TLK+ IE+RLRD+I   L VE +
Subjt:  VEKVLD-EVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQI

Q84LK7 NifU-like protein 1, chloroplastic1.4e-2972.83Show/hide
Query:  LPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKV
        LPLT  NVE VLD+VRP L ADGG+VALHEI G VV LKLQGACGSCPSS +T+K GIE RL +KIP++  VE + D ETGLELNEENVEKV
Subjt:  LPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKV

Q84RQ7 NifU-like protein 3, chloroplastic1.2e-3984.21Show/hide
Query:  CVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTET-GLELNEENVEKV
        CV+PLTEENVE+VLDEVRP LMADGGNVALHEIDGLVV+LKLQGACGSCPSS+MTLKMGIE+RLRDKIPEI+ VEQ +++ET GLELN+EN+EKV
Subjt:  CVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTET-GLELNEENVEKV

Q93W20 NifU-like protein 2, chloroplastic5.0e-3572.12Show/hide
Query:  ICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQ
        I  +PLTEENVE VLDE+RP LM+DGGNVALHEIDG +V +KLQGACGSCPSSTMT+KMGIE RL +KIPEI+ VE + D ETGLELNEEN+EKV   I+
Subjt:  ICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQ

Query:  VSLL
          L+
Subjt:  VSLL

Arabidopsis top hitse value%identityAlignment
AT3G20970.1 NFU domain protein 47.0e-0843.28Show/hide
Query:  VRPGLMADGGNVALHEID--GLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTE
        +RP +  DGG++     D    +V L++QGAC  CPSS++TLK GIE  L   + E+  VEQ  D E
Subjt:  VRPGLMADGGNVALHEID--GLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTE

AT4G01940.1 NFU domain protein 15.9e-1551.28Show/hide
Query:  LTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEIL-EVEQIMDTE
        LT +NV+ VL++VRP L++DGGNV +  ++  VV LKLQGAC SCPSS+ T+ MGIE  L++K  + L ++ Q+ D E
Subjt:  LTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEIL-EVEQIMDTE

AT4G25910.1 NFU domain protein 38.2e-4184.21Show/hide
Query:  CVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTET-GLELNEENVEKV
        CV+PLTEENVE+VLDEVRP LMADGGNVALHEIDGLVV+LKLQGACGSCPSS+MTLKMGIE+RLRDKIPEI+ VEQ +++ET GLELN+EN+EKV
Subjt:  CVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTET-GLELNEENVEKV

AT5G49940.1 NIFU-like protein 23.6e-3672.12Show/hide
Query:  ICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQ
        I  +PLTEENVE VLDE+RP LM+DGGNVALHEIDG +V +KLQGACGSCPSSTMT+KMGIE RL +KIPEI+ VE + D ETGLELNEEN+EKV   I+
Subjt:  ICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQ

Query:  VSLL
          L+
Subjt:  VSLL

AT5G49940.2 NIFU-like protein 21.2e-3676.29Show/hide
Query:  ICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSF
        I  +PLTEENVE VLDE+RP LM+DGGNVALHEIDG +V +KLQGACGSCPSSTMT+KMGIE RL +KIPEI+ VE + D ETGLELNEEN+EKV F
Subjt:  ICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGATGAGGAGTTTTTTTGGGAGGAGCTGCGGCGGAGATCGGACGGCGACTTTCCGGCGGCGGAGGAAGTGTGCTTTTGGGATAAGCTTCTTAATAATGGTAATTT
TGAGGAAGTGCTTCTGGTGGAACCGCTTCTGGAAAAGAGTGATTTGGAGGAAGAAGAAGAAGAAGAAGAAGAAGCTGCTGATTCCTTTTTTGAAAGCTTCCATTTTTCTT
CCATTTGTGTTCTTCCATTGACTGAGGAAAATGTGGAGAAGGTATTGGATGAAGTAAGGCCAGGCCTGATGGCTGATGGAGGGAATGTTGCTTTGCATGAGATAGATGGG
CTTGTTGTGATATTGAAACTTCAAGGAGCATGTGGTTCTTGCCCAAGCTCAACAATGACACTGAAAATGGGAATTGAGACCCGACTCAGAGACAAAATTCCTGAAATTTT
GGAAGTTGAGCAGATTATGGACACTGAAACAGGACTTGAACTCAATGAGGAAAATGTTGAAAAGGTGAGTTTCTCAATTCAAGTTTCTCTGCTATGCAGAAAGGAATTTT
AA
mRNA sequenceShow/hide mRNA sequence
ATGGATGATGAGGAGTTTTTTTGGGAGGAGCTGCGGCGGAGATCGGACGGCGACTTTCCGGCGGCGGAGGAAGTGTGCTTTTGGGATAAGCTTCTTAATAATGGTAATTT
TGAGGAAGTGCTTCTGGTGGAACCGCTTCTGGAAAAGAGTGATTTGGAGGAAGAAGAAGAAGAAGAAGAAGAAGCTGCTGATTCCTTTTTTGAAAGCTTCCATTTTTCTT
CCATTTGTGTTCTTCCATTGACTGAGGAAAATGTGGAGAAGGTATTGGATGAAGTAAGGCCAGGCCTGATGGCTGATGGAGGGAATGTTGCTTTGCATGAGATAGATGGG
CTTGTTGTGATATTGAAACTTCAAGGAGCATGTGGTTCTTGCCCAAGCTCAACAATGACACTGAAAATGGGAATTGAGACCCGACTCAGAGACAAAATTCCTGAAATTTT
GGAAGTTGAGCAGATTATGGACACTGAAACAGGACTTGAACTCAATGAGGAAAATGTTGAAAAGGTGAGTTTCTCAATTCAAGTTTCTCTGCTATGCAGAAAGGAATTTT
AA
Protein sequenceShow/hide protein sequence
MDDEEFFWEELRRRSDGDFPAAEEVCFWDKLLNNGNFEEVLLVEPLLEKSDLEEEEEEEEEAADSFFESFHFSSICVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDG
LVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVSFSIQVSLLCRKEF