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ClCG02G021145 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG02G021145
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionTRICHOME BIREFRINGENCE-LIKE 4
Genome locationCG_Chr02:35631897..35632254
RNA-Seq ExpressionClCG02G021145
SyntenyClCG02G021145
Gene Ontology termsGO:0010411 - xyloglucan metabolic process (biological process)
GO:0005794 - Golgi apparatus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0016413 - O-acetyltransferase activity (molecular function)
InterPro domainsIPR026057 - PC-Esterase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651242.1 hypothetical protein Csa_000903 [Cucumis sativus]3.5e-0970.73Show/hide
Query:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI
        ++++ KP EC++PRFDPM FLHLLRGKK AF GDSVARNH+
Subjt:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI

KAE9620056.1 putative PMR5 domain, PC-Esterase, trichome birefringence-like family [Lupinus albus]5.9e-0965.85Show/hide
Query:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI
        ++++ KPHECD+PRFDP +FL ++RGKK AF GDSVARNH+
Subjt:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI

XP_004147443.2 protein ALTERED XYLOGLUCAN 4-like [Cucumis sativus]3.5e-0970.73Show/hide
Query:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI
        ++++ KP EC++PRFDPM FLHLLRGKK AF GDSVARNH+
Subjt:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI

XP_008443481.1 PREDICTED: protein ALTERED XYLOGLUCAN 4-like [Cucumis melo]3.5e-0970.73Show/hide
Query:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI
        ++++ KP EC++PRFDPM FLHLLRGKK AF GDSVARNH+
Subjt:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI

XP_019427008.1 PREDICTED: protein ALTERED XYLOGLUCAN 4-like [Lupinus angustifolius]2.7e-0965.85Show/hide
Query:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI
        ++++ KPHECD+PRFDP +FL+++RGKK AF GDSVARNH+
Subjt:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI

TrEMBL top hitse value%identityAlignment
A0A0A0LFF0 PMR5N domain-containing protein1.7e-0970.73Show/hide
Query:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI
        ++++ KP EC++PRFDPM FLHLLRGKK AF GDSVARNH+
Subjt:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI

A0A1S3B8W3 protein ALTERED XYLOGLUCAN 4-like1.7e-0970.73Show/hide
Query:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI
        ++++ KP EC++PRFDPM FLHLLRGKK AF GDSVARNH+
Subjt:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI

A0A5A7UF32 Protein ALTERED XYLOGLUCAN 4-like1.7e-0970.73Show/hide
Query:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI
        ++++ KP EC++PRFDPM FLHLLRGKK AF GDSVARNH+
Subjt:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI

A0A6A5N3E5 Putative PMR5 domain, PC-Esterase, trichome birefringence-like family2.9e-0965.85Show/hide
Query:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI
        ++++ KPHECD+PRFDP +FL ++RGKK AF GDSVARNH+
Subjt:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI

I1LWD8 PMR5N domain-containing protein8.4e-0963.41Show/hide
Query:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI
        ++++ KP +CD+PRFDP  FLH++RGKK AF GDSVARNH+
Subjt:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI

SwissProt top hitse value%identityAlignment
O82509 Protein trichome birefringence-like 232.6e-0748.78Show/hide
Query:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI
        ++++ KP++C +PRFD + FL L+R K +A  GDS+ARNH+
Subjt:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI

Q8H1R3 Protein trichome birefringence-like 245.2e-0856.41Show/hide
Query:  YQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI
        ++ KPH+C +PRFDP  FL L+R K +AF GDS++RNH+
Subjt:  YQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI

Q9FHM0 Protein YLS72.0e-0757.5Show/hide
Query:  SYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI
        +++ KP +CD+PRFD   FL L+RGK  AF GDSVARN +
Subjt:  SYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI

Q9LRS2 Protein ALTERED XYLOGLUCAN 4-like6.8e-0858.97Show/hide
Query:  YQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI
        ++ KP  CD+PRF+P  FL ++RGKK  F GDSVARNH+
Subjt:  YQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI

Q9M896 Protein trichome birefringence-like 201.4e-0856.1Show/hide
Query:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI
        M ++ KP ECD+P FDP  FL ++RG + AF GDSV+RNH+
Subjt:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI

Arabidopsis top hitse value%identityAlignment
AT3G02440.1 TRICHOME BIREFRINGENCE-LIKE 209.8e-1056.1Show/hide
Query:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI
        M ++ KP ECD+P FDP  FL ++RG + AF GDSV+RNH+
Subjt:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI

AT3G28150.1 TRICHOME BIREFRINGENCE-LIKE 224.8e-0958.97Show/hide
Query:  YQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI
        ++ KP  CD+PRF+P  FL ++RGKK  F GDSVARNH+
Subjt:  YQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI

AT4G11090.1 TRICHOME BIREFRINGENCE-LIKE 231.8e-0848.78Show/hide
Query:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI
        ++++ KP++C +PRFD + FL L+R K +A  GDS+ARNH+
Subjt:  MSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI

AT4G23790.1 TRICHOME BIREFRINGENCE-LIKE 243.7e-0956.41Show/hide
Query:  YQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI
        ++ KPH+C +PRFDP  FL L+R K +AF GDS++RNH+
Subjt:  YQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI

AT5G51640.1 Plant protein of unknown function (DUF828)1.4e-0857.5Show/hide
Query:  SYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI
        +++ KP +CD+PRFD   FL L+RGK  AF GDSVARN +
Subjt:  SYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTAGCATTGAATTTGATGGTTGGGCTTTTTACTAGGCCAGTTGATTTGATCATCCCAATTCACGTAGGCCTAAATATACACATAAGAAAGAGGCTAGTCCAGCA
AGTGTTTAAAATGTCATATCAATTGAAACCCCATGAATGTGATATTCCAAGGTTTGATCCAATGGTGTTTCTTCATCTTCTTCGTGGGAAGAAATTCGCATTTACCGGTG
ATTCTGTTGCTAGAAACCACATTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTAGCATTGAATTTGATGGTTGGGCTTTTTACTAGGCCAGTTGATTTGATCATCCCAATTCACGTAGGCCTAAATATACACATAAGAAAGAGGCTAGTCCAGCA
AGTGTTTAAAATGTCATATCAATTGAAACCCCATGAATGTGATATTCCAAGGTTTGATCCAATGGTGTTTCTTCATCTTCTTCGTGGGAAGAAATTCGCATTTACCGGTG
ATTCTGTTGCTAGAAACCACATTTTGTAA
Protein sequenceShow/hide protein sequence
MELALNLMVGLFTRPVDLIIPIHVGLNIHIRKRLVQQVFKMSYQLKPHECDIPRFDPMVFLHLLRGKKFAFTGDSVARNHIL