; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG02G021260 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG02G021260
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionexosome complex component RRP41-like
Genome locationCG_Chr02:35791549..35794697
RNA-Seq ExpressionClCG02G021260
SyntenyClCG02G021260
Gene Ontology termsGO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0009845 - seed germination (biological process)
GO:0016075 - rRNA catabolic process (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0016740 - transferase activity (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR015847 - Exoribonuclease, phosphorolytic domain 2
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570792.1 Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. sororia]8.4e-13289.13Show/hide
Query:  MAKKATPSTTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATP+T+TYSPSPT HKTRPPIFR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPSTTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGLENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGS
        FSTPVRGQG ENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLAL+DAGIMLYDLVASVSVSCFGKNLL+DP LEEENYQDGS
Subjt:  FSTPVRGQGLENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISEE
        LMITCMPSRYEVTQLTITGEWSTAKINE                  GMQLCLDASCKLV IMRSCLKESAAT+SEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISEE

XP_008463959.1 PREDICTED: exosome complex component RRP41-like [Cucumis melo]4.9e-13289.17Show/hide
Query:  MAKKATP-STTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
        MAKKATP +TTTYSPSPT+HKTRPP+FRTDDV WVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
Subjt:  MAKKATP-STTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT

Query:  TFSTPVRGQGLENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDG
        TFSTPVRGQG ENKEFSSMLHK+LEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLAL+DAGIMLYDLVASVSVSCFGKNLL+DP+LEEENYQDG
Subjt:  TFSTPVRGQGLENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDG

Query:  SLMITCMPSRYEVTQLTITGEWSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISEE
        SLMITCMPSRYEVTQLTITGEW+T+KINE                  GMQLCLDASCKLVEIMRSCLKESAATISEE
Subjt:  SLMITCMPSRYEVTQLTITGEWSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISEE

XP_022944714.1 exosome complex component RRP41-like [Cucurbita moschata]8.4e-13289.13Show/hide
Query:  MAKKATPSTTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATP+TTTYSPSPT HKTRPPIFR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPSTTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGLENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGS
        FSTPVRGQG ENKEFSSMLHKALEGAII ETFPKTTVDVFALVLESGGSDLPVVISCASLAL+DAGIMLYDLVASVSVSCFGKNLL+DP LEEENYQDGS
Subjt:  FSTPVRGQGLENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISEE
        LMITCMPSRYEVTQLTITGEWSTAKINE                  GMQLCLDASCKLV IMRSCLKESAAT+SEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISEE

XP_022986160.1 exosome complex component RRP41-like [Cucurbita maxima]8.4e-13289.13Show/hide
Query:  MAKKATPSTTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATP+T+TYSPSPT HKTRPPIFR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPSTTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGLENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGS
        FSTPVRGQG ENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLAL+DAGIMLYDLVASVSVSCFGKNLL+DP LEEENYQDGS
Subjt:  FSTPVRGQGLENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISEE
        LMITCMPSRYEVTQLTITGEWSTAKINE                  GMQLCLDASCKLV IMRSCLKESAAT+SEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISEE

XP_038900607.1 exosome complex component RRP41-like isoform X1 [Benincasa hispida]8.4e-13289.86Show/hide
Query:  MAKKATPSTTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATP+TTTYSPSPTI KTRPPIFRT DV+WVR DGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPSTTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGLENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGS
        FSTPVRGQG ENKEFSSMLHKALEGAI+LETFPKTTVDVFALVLESGGSDLPVVISCASLAL+DAGIMLYDLVASVSVSCFGKNLL+DP LEEENYQDGS
Subjt:  FSTPVRGQGLENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISEE
        LMITCMPSRYEVTQLTITGEWSTAKINE                  GMQLCLDASCKLVEIMRSCLKESAATISEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISEE

TrEMBL top hitse value%identityAlignment
A0A0A0KEK6 Uncharacterized protein1.3e-13087.68Show/hide
Query:  MAKKATPSTTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATP+TTTYSPSPT+HKTRP +FRTDDV WVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPSTTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGLENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGS
        FSTPVRGQG ENK+FSSMLHK+LEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLAL+DAGIMLYDLVASVSVSCFGKNLL+D +LEEENYQDGS
Subjt:  FSTPVRGQGLENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISEE
        LMITCMPSRYEVTQLTITGEW+T+KINE                  GMQLCLDASCKLVEIMRSCLKESA TISEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISEE

A0A1S3CKF3 exosome complex component RRP41-like2.4e-13289.17Show/hide
Query:  MAKKATP-STTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
        MAKKATP +TTTYSPSPT+HKTRPP+FRTDDV WVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
Subjt:  MAKKATP-STTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT

Query:  TFSTPVRGQGLENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDG
        TFSTPVRGQG ENKEFSSMLHK+LEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLAL+DAGIMLYDLVASVSVSCFGKNLL+DP+LEEENYQDG
Subjt:  TFSTPVRGQGLENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDG

Query:  SLMITCMPSRYEVTQLTITGEWSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISEE
        SLMITCMPSRYEVTQLTITGEW+T+KINE                  GMQLCLDASCKLVEIMRSCLKESAATISEE
Subjt:  SLMITCMPSRYEVTQLTITGEWSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISEE

A0A6J1CHT0 exosome complex component RRP41-like5.9e-13188.41Show/hide
Query:  MAKKATPSTTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATP+TTTYSPSPTIHKTRPPIFR+D+ +WVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPSTTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGLENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGS
        F+TPVRGQG ENKEFSSMLHKALEGAIILETFPKTTVD+FALVLESGGSDLPVVISCASLAL+DAGIMLYDLVASVSVSCFGKNLL+DPMLEEENYQDGS
Subjt:  FSTPVRGQGLENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISEE
        LMITCMPSRYEVTQLTITGEWSTAKINE                  GMQLCLDASCKLV+IMRSCLKES ATIS++
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISEE

A0A6J1FYV1 exosome complex component RRP41-like4.1e-13289.13Show/hide
Query:  MAKKATPSTTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATP+TTTYSPSPT HKTRPPIFR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPSTTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGLENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGS
        FSTPVRGQG ENKEFSSMLHKALEGAII ETFPKTTVDVFALVLESGGSDLPVVISCASLAL+DAGIMLYDLVASVSVSCFGKNLL+DP LEEENYQDGS
Subjt:  FSTPVRGQGLENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISEE
        LMITCMPSRYEVTQLTITGEWSTAKINE                  GMQLCLDASCKLV IMRSCLKESAAT+SEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISEE

A0A6J1JDA9 exosome complex component RRP41-like4.1e-13289.13Show/hide
Query:  MAKKATPSTTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATP+T+TYSPSPT HKTRPPIFR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPSTTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGLENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGS
        FSTPVRGQG ENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLAL+DAGIMLYDLVASVSVSCFGKNLL+DP LEEENYQDGS
Subjt:  FSTPVRGQGLENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISEE
        LMITCMPSRYEVTQLTITGEWSTAKINE                  GMQLCLDASCKLV IMRSCLKESAAT+SEE
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISEE

SwissProt top hitse value%identityAlignment
A2RVK7 Exosome complex component RRP41-like3.6e-10167.64Show/hide
Query:  MAKKATPSTTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MA K   +T TYSP   + ++R PIF+  D++W RPDGRGFHQCRPA  +TGAV++ASGSAYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT 
Subjt:  MAKKATPSTTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGLENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGS
        F++P  GQG ++KE+SSMLHKALEG I++ETFPKTTVDVFALVLESGGSDL V+ISCASLAL+DAGIM+YDL+ +VSVSC GK+L++DP+ EEE  +DGS
Subjt:  FSTPVRGQGLENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISE
         M+TCMPSRYE+TQLTITGEW+T  INE                   MQLCLDAS KL EIMR CLK+SA+   E
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISE

O59223 Exosome complex component Rrp419.3e-2534.74Show/hide
Query:  RPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGLENKEFSS
        +P   +  D    R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE   K +   D   L    +   FS   R   G    + E S 
Subjt:  RPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGLENKEFSS

Query:  MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGSLMITCMPSRYEVTQLTI
        ++  ALE A+ILE FP+T++DVF  VL++        I+ ASLAL+DAGI + DLVA+ +       ++LD   EE+NY +  + +  MP + ++T L +
Subjt:  MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGSLMITCMPSRYEVTQLTI

Query:  TGEWSTAKINEKV
         G  +  +  E V
Subjt:  TGEWSTAKINEKV

Q6P0I8 Exosome complex component MTR32.9e-2633.75Show/hide
Query:  RGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVSYTTFSTPVRG---QGLENKEFSSMLHKALEGAIILETFPK
        RG    RP F R G V+ A GSAY E GNTK+I SV+GP+E+ ++       GRL C      FS   RG   QG E ++ S+ L ++L   + L  +P+
Subjt:  RGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVSYTTFSTPVRG---QGLENKEFSSMLHKALEGAIILETFPK

Query:  TTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEE------ENYQD--GSLMITCMPSRYEVTQLTITGEWSTAKI
        + +DV  +VLE+ GS L   ++CAS+AL+DAGI +YD+V   ++   G   L+DP   E      E Y D  G + +  +P+  +V+ L   GE     +
Subjt:  TTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEE------ENYQD--GSLMITCMPSRYEVTQLTITGEWSTAKI

Query:  NEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCL
         E                   M+ C+D   KL  +++  L
Subjt:  NEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCL

Q8U0L9 Exosome complex component Rrp415.4e-2535.21Show/hide
Query:  RPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGLENKEFSS
        +P   +  D    R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE   K +   D   L    +   FS   R   G    + E S 
Subjt:  RPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGLENKEFSS

Query:  MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGSLMITCMPSRYEVTQLTI
        ++  ALE A+ILE FP+T +DVF  VL++        I+ ASLAL+DAGI + DLVA+ S       ++LD   EE+NY +  + +  MP + ++T L +
Subjt:  MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGSLMITCMPSRYEVTQLTI

Query:  TGEWSTAKINEKV
         G  +  +  E V
Subjt:  TGEWSTAKINEKV

Q9V119 Exosome complex component Rrp412.7e-2435.64Show/hide
Query:  RPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGLENKEFSS
        +P   +  D    R DGR  ++ RP     G +  A+GSAY E+G  K+I +V+GPRE   K +   D   L    +   FS   R   G    + E S 
Subjt:  RPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFSTPVR---GQGLENKEFSS

Query:  MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGSLMITCMPSRYEVTQLTI
        ++  ALE A+ILE FP+T +DVF  VL++        I+ ASLAL+DAGI + DLVA+ +       ++LD   EE+NY +  + +  MP + ++T L +
Subjt:  MLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGSLMITCMPSRYEVTQLTI

Query:  TG
         G
Subjt:  TG

Arabidopsis top hitse value%identityAlignment
AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein7.1e-1231.9Show/hide
Query:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GLENKEFSSMLHKALEGAIILETFP
        R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++         +     P  GQ G   KE+  +L + ++   +L   P
Subjt:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GLENKEFSSMLHKALEGAIILETFP

Query:  KTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKN--LLLDPMLEEE
         TT  V   V+   GS LP  I+ A  AL DAGI +  L  ++   C  +N  L+LDP   EE
Subjt:  KTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKN--LLLDPMLEEE

AT3G46210.2 Ribosomal protein S5 domain 2-like superfamily protein7.1e-1231.9Show/hide
Query:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GLENKEFSSMLHKALEGAIILETFP
        R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++         +     P  GQ G   KE+  +L + ++   +L   P
Subjt:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQ-GLENKEFSSMLHKALEGAIILETFP

Query:  KTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKN--LLLDPMLEEE
         TT  V   V+   GS LP  I+ A  AL DAGI +  L  ++   C  +N  L+LDP   EE
Subjt:  KTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKN--LLLDPMLEEE

AT3G61620.1 3'-5'-exoribonuclease family protein4.9e-2132.85Show/hide
Query:  EWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTPVRGQ---GLENKEFSSMLHKALEGA
        E +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   + C  S   FST  R +      + E S ++ + +E  
Subjt:  EWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTPVRGQ---GLENKEFSSMLHKALEGA

Query:  IILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKI
        I+ E  P + +D+F  VL++ G      I+ A+LAL+DAGI + DL  S S        LLD    E++     + +  +P   +V+ L +      AK+
Subjt:  IILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKI

Query:  NEKVFST
          + F T
Subjt:  NEKVFST

AT3G61620.2 3'-5'-exoribonuclease family protein4.9e-2132.85Show/hide
Query:  EWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTPVRGQ---GLENKEFSSMLHKALEGA
        E +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   + C  S   FST  R +      + E S ++ + +E  
Subjt:  EWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFSTPVRGQ---GLENKEFSSMLHKALEGA

Query:  IILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKI
        I+ E  P + +D+F  VL++ G      I+ A+LAL+DAGI + DL  S S        LLD    E++     + +  +P   +V+ L +      AK+
Subjt:  IILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKI

Query:  NEKVFST
          + F T
Subjt:  NEKVFST

AT4G27490.1 3'-5'-exoribonuclease family protein2.5e-10267.64Show/hide
Query:  MAKKATPSTTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MA K   +T TYSP   + ++R PIF+  D++W RPDGRGFHQCRPA  +TGAV++ASGSAYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT 
Subjt:  MAKKATPSTTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FSTPVRGQGLENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGS
        F++P  GQG ++KE+SSMLHKALEG I++ETFPKTTVDVFALVLESGGSDL V+ISCASLAL+DAGIM+YDL+ +VSVSC GK+L++DP+ EEE  +DGS
Subjt:  FSTPVRGQGLENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISE
         M+TCMPSRYE+TQLTITGEW+T  INE                   MQLCLDAS KL EIMR CLK+SA+   E
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAAAAAGCGACACCAAGTACCACAACGTATTCTCCGTCTCCTACTATCCATAAAACCAGGCCACCCATCTTCAGAACCGACGACGTCGAATGGGTTCGCCCCGA
TGGCCGAGGCTTCCACCAATGCCGGCCTGCTTTTTTTAGGACCGGTGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAGTTCGGTAATACCAAGGTCATTGTTTCTG
TATTTGGTCCTAGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTCAATTGTAGTGTCAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGGATTG
GAAAACAAGGAGTTCTCCTCAATGTTACATAAAGCTCTGGAAGGGGCAATAATATTGGAGACATTCCCCAAGACAACCGTGGATGTATTTGCCTTGGTGTTGGAATCTGG
CGGCAGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTTCCGACGCTGGAATTATGCTTTATGATCTTGTTGCCTCTGTTTCTGTGAGCTGCTTTGGTAAGA
ATCTTCTTCTTGATCCTATGTTGGAAGAGGAAAACTACCAAGATGGAAGTCTGATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAACTTACTATTACAGGCGAA
TGGTCAACTGCTAAAATCAATGAGAAAGTTTTTAGTACTAAAACATCATCTGATAATGGTTTGTTTTTACCACCAAAGGGTATGCAGCTTTGCCTTGATGCTTCGTGTAA
GCTTGTGGAGATCATGCGGTCATGCTTGAAGGAATCTGCCGCTACCATTTCAGAGGAATAA
mRNA sequenceShow/hide mRNA sequence
AAATAAAAATAAAAAGAAGAAAGAGAGTAAAATTAGCACTGGTCTGGCGCCCTTACCCGCTTCCAAGGTTCAGTTTCTCAATCTTTGGCTCCTGGGCCTCCACCAAACGC
ACAGACCTTTTGCAATCTCTTTGAATAGACCATTCTTTAAACCGATCGATCCTGGGTTTTCATTATCTCGACGGCCGCAGGAAATTTGTGTGGCGGAGCCTTCTAACTTA
TCGACGGAGTCATTCATTGGCGTTCTGAATGGCCAAAAAAGCGACACCAAGTACCACAACGTATTCTCCGTCTCCTACTATCCATAAAACCAGGCCACCCATCTTCAGAA
CCGACGACGTCGAATGGGTTCGCCCCGATGGCCGAGGCTTCCACCAATGCCGGCCTGCTTTTTTTAGGACCGGTGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAG
TTCGGTAATACCAAGGTCATTGTTTCTGTATTTGGTCCTAGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTCAATTGTAGTGTCAGTTATACAACATT
TTCCACTCCAGTTCGTGGACAGGGATTGGAAAACAAGGAGTTCTCCTCAATGTTACATAAAGCTCTGGAAGGGGCAATAATATTGGAGACATTCCCCAAGACAACCGTGG
ATGTATTTGCCTTGGTGTTGGAATCTGGCGGCAGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTTCCGACGCTGGAATTATGCTTTATGATCTTGTTGCC
TCTGTTTCTGTGAGCTGCTTTGGTAAGAATCTTCTTCTTGATCCTATGTTGGAAGAGGAAAACTACCAAGATGGAAGTCTGATGATAACTTGTATGCCATCTCGTTACGA
AGTCACTCAACTTACTATTACAGGCGAATGGTCAACTGCTAAAATCAATGAGAAAGTTTTTAGTACTAAAACATCATCTGATAATGGTTTGTTTTTACCACCAAAGGGTA
TGCAGCTTTGCCTTGATGCTTCGTGTAAGCTTGTGGAGATCATGCGGTCATGCTTGAAGGAATCTGCCGCTACCATTTCAGAGGAATAA
Protein sequenceShow/hide protein sequence
MAKKATPSTTTYSPSPTIHKTRPPIFRTDDVEWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGL
ENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALSDAGIMLYDLVASVSVSCFGKNLLLDPMLEEENYQDGSLMITCMPSRYEVTQLTITGE
WSTAKINEKVFSTKTSSDNGLFLPPKGMQLCLDASCKLVEIMRSCLKESAATISEE