; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG02G021680 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG02G021680
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionSerine/arginine repetitive matrix protein 1-like
Genome locationCG_Chr02:36133896..36134597
RNA-Seq ExpressionClCG02G021680
SyntenyClCG02G021680
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR007592 - GLABROUS1 enhancer-binding protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037301.1 serine/arginine repetitive matrix protein 1-like [Cucumis melo var. makuwa]7.4e-9782.46Show/hide
Query:  MSTPRRSPPSNASPGTLTLTLTLTQSNNPTDQLHFTDEDELNLLNCYLQIARSENPTKNSQPTLDSPTLDRIQTAIGPKFTHSHIADKLHRLKLLYHKFA
        MSTP RS PSNASP TLTLTLTLTQ NN TDQLHFTDEDE+NLL  YLQI+RSENPTKNS PTLDSP  DR+QTA+GPKF+HS IADKLHRLKLLYHKFA
Subjt:  MSTPRRSPPSNASPGTLTLTLTLTQSNNPTDQLHFTDEDELNLLNCYLQIARSENPTKNSQPTLDSPTLDRIQTAIGPKFTHSHIADKLHRLKLLYHKFA

Query:  RTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKE----KVDLKNYPVLVGEFSRLFPGNGVWREGLRAIEEKSLKD
        RTKSFIKTPH RQIL+LGR IWGKSPTPITRKPQVISPSR LSRRIKQRS    +RKE     +DLKN+PVLV EFS+ FPGNGVWREGLR +EEK+LKD
Subjt:  RTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKE----KVDLKNYPVLVGEFSRLFPGNGVWREGLRAIEEKSLKD

Query:  MNEKWVLLHIEGAELKARRASLLKQQLR
        MNEKWVLLHIEGAELKARRA+LLKQQL+
Subjt:  MNEKWVLLHIEGAELKARRASLLKQQLR

KAG6570827.1 hypothetical protein SDJN03_29742, partial [Cucurbita argyrosperma subsp. sororia]2.2e-7770.48Show/hide
Query:  MSTPRRSPPSNASPGTLTLTLTLTQSNNPTDQLHFTDEDELNLLNCYLQIARSENPTKNSQPTLDSPTLDRIQTAIGPKFTHSHIADKLHRLKLLYHKFA
        MSTP R PPSNASP TLT               HF++EDELNLLNCYLQIARS NPT NSQPTLDSP LDRI+TA+ PKFT+SHIADKLHRLKL YHK A
Subjt:  MSTPRRSPPSNASPGTLTLTLTLTQSNNPTDQLHFTDEDELNLLNCYLQIARSENPTKNSQPTLDSPTLDRIQTAIGPKFTHSHIADKLHRLKLLYHKFA

Query:  RTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAIEEKSLKDMNEK
        RTKS IKTPHHR+ILE+GR IWGK PT  T KPQ I   RA+ RRIKQRS    S K+ VDL ++PVL+ EFSR FPGNGVW+EGLR +EEKSL+DMNEK
Subjt:  RTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAIEEKSLKDMNEK

Query:  WVLLHIEGAELKARRASLLKQQLRITE
        WVLLHIE AELKARRA+LL++QLR+ +
Subjt:  WVLLHIEGAELKARRASLLKQQLRITE

KAG6606028.1 hypothetical protein SDJN03_03345, partial [Cucurbita argyrosperma subsp. sororia]9.1e-7165.8Show/hide
Query:  MSTPRRSPPSNASPGTL-TLTLTLTQSNNPTDQLHFTDEDELNLLNCYLQIARSENPTKNSQPTLDSPTLDRIQTAIGPKFTHSHIADKLHRLKLLYHKF
        MSTPRRSPPS  +  +       LTQS     Q+HFTDEDEL+LLNCYL++A S    KNSQPTLDSP LDRI TA+G KF HSHIADKLHRLK+ YHKF
Subjt:  MSTPRRSPPSNASPGTL-TLTLTLTQSNNPTDQLHFTDEDELNLLNCYLQIARSENPTKNSQPTLDSPTLDRIQTAIGPKFTHSHIADKLHRLKLLYHKF

Query:  ARTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAIEEKSLKDMNE
        ARTKSFIKTPHH +ILE+GR IWGK   P T KPQVI      SRRI+ RS+   ++K+ VDLKN+PVLV EFSR FPGNGVWREGL+ +EE SLK MNE
Subjt:  ARTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAIEEKSLKDMNE

Query:  KWVLLHIEGAELKARRASLLKQQLRITETSE
        KWVLLHIE AELKARR +L+++Q+  T+T +
Subjt:  KWVLLHIEGAELKARRASLLKQQLRITETSE

KGN46890.1 hypothetical protein Csa_020607 [Cucumis sativus]9.0e-9578.9Show/hide
Query:  MSTPRRSPPSNASPGTLTLTLTLTQSNNPTDQLHFTDEDELNLLNCYLQIARSENPTKNSQPTLDSPTLDRIQTAIGPKFTHSHIADKLHRLKLLYHKFA
        MST  RSPPS+ASP       TLTQSNN  DQLHF DEDE+NLLN YLQI+RSENPTKNS PTLDS   DR+QTA+GPKF+HS IADKLHRLKLLYHKFA
Subjt:  MSTPRRSPPSNASPGTLTLTLTLTQSNNPTDQLHFTDEDELNLLNCYLQIARSENPTKNSQPTLDSPTLDRIQTAIGPKFTHSHIADKLHRLKLLYHKFA

Query:  RTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKE----KVDLKNYPVLVGEFSRLFPGNGVWREGLRAIEEKSLKD
        RTKSFIKTPH RQIL+LGR IWGKSPTP+TRKPQVISPSR LSRRIKQRSI   +RKE     VDLKN+PVLV EFSR FPGNGVWR+GLR + EK+LKD
Subjt:  RTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKE----KVDLKNYPVLVGEFSRLFPGNGVWREGLRAIEEKSLKD

Query:  MNEKWVLLHIEGAELKARRASLLKQQLRITETSEDVN
        MNEKWVLLHIEGAELKARRA+LLK+QLR TET+EDVN
Subjt:  MNEKWVLLHIEGAELKARRASLLKQQLRITETSEDVN

XP_006424433.1 probable transcription factor At1g11510 [Citrus clementina]1.9e-3136.48Show/hide
Query:  STPRRSPPSNASPGTLTLTLTLTQSNNPTDQLHFTDEDELNLLNCYLQIAR-----SENPTKNSQPTLDSPTLDRIQTAIGPKFTHSHIADKLHRLKLLY
        STPR+      SP        ++   +P  ++ FTD DE+ LL  + ++A      S + T NS  TLDS + +RI +++G KFTH+ I DK+ RL++ Y
Subjt:  STPRRSPPSNASPGTLTLTLTLTQSNNPTDQLHFTDEDELNLLNCYLQIAR-----SENPTKNSQPTLDSPTLDRIQTAIGPKFTHSHIADKLHRLKLLY

Query:  HKFARTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRAL---SRRIKQRSISRLSR-KEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAIEEK
        HK AR+KS IKTPH + + ++ + IWGK  T   ++ + +  S +        +Q++     R +E  +L  YPVL GE S+  P N VWRE L+++   
Subjt:  HKFARTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRAL---SRRIKQRSISRLSR-KEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAIEEK

Query:  SLKDMNEKWVLLHIEGAELKARRASLLKQQLRI
         LK+MN+KW+L+ IE A++ +++A L+K+Q ++
Subjt:  SLKDMNEKWVLLHIEGAELKARRASLLKQQLRI

TrEMBL top hitse value%identityAlignment
A0A0A0KAX7 Uncharacterized protein4.4e-9578.9Show/hide
Query:  MSTPRRSPPSNASPGTLTLTLTLTQSNNPTDQLHFTDEDELNLLNCYLQIARSENPTKNSQPTLDSPTLDRIQTAIGPKFTHSHIADKLHRLKLLYHKFA
        MST  RSPPS+ASP       TLTQSNN  DQLHF DEDE+NLLN YLQI+RSENPTKNS PTLDS   DR+QTA+GPKF+HS IADKLHRLKLLYHKFA
Subjt:  MSTPRRSPPSNASPGTLTLTLTLTQSNNPTDQLHFTDEDELNLLNCYLQIARSENPTKNSQPTLDSPTLDRIQTAIGPKFTHSHIADKLHRLKLLYHKFA

Query:  RTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKE----KVDLKNYPVLVGEFSRLFPGNGVWREGLRAIEEKSLKD
        RTKSFIKTPH RQIL+LGR IWGKSPTP+TRKPQVISPSR LSRRIKQRSI   +RKE     VDLKN+PVLV EFSR FPGNGVWR+GLR + EK+LKD
Subjt:  RTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKE----KVDLKNYPVLVGEFSRLFPGNGVWREGLRAIEEKSLKD

Query:  MNEKWVLLHIEGAELKARRASLLKQQLRITETSEDVN
        MNEKWVLLHIEGAELKARRA+LLK+QLR TET+EDVN
Subjt:  MNEKWVLLHIEGAELKARRASLLKQQLRITETSEDVN

A0A2H5MZL8 Uncharacterized protein2.0e-3136.6Show/hide
Query:  STPRRSPPSNASPGTLTLTLTLTQSNNPTDQ--LHFTDEDELNLLNCYLQIAR-----SENPTKNSQPTLDSPTLDRIQTAIGPKFTHSHIADKLHRLKL
        STPR+      SP            ++PT Q    FTD DE+ LL  + ++A      S + T NS  TLDS + +RI +++G KFTH+ I DK+ RL++
Subjt:  STPRRSPPSNASPGTLTLTLTLTQSNNPTDQ--LHFTDEDELNLLNCYLQIAR-----SENPTKNSQPTLDSPTLDRIQTAIGPKFTHSHIADKLHRLKL

Query:  LYHKFARTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRAL---SRRIKQRSISRLSR-KEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAIE
         YHK AR+KS +KTPH + + ++ + IWGK  T   ++ + +  S +        +Q++     R +E  +L  YPVL GE S+  P N VWRE L+++ 
Subjt:  LYHKFARTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRAL---SRRIKQRSISRLSR-KEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAIE

Query:  EKSLKDMNEKWVLLHIEGAELKARRASLLKQQLRI
           LK+MN+KW+L+ IE A++ +++A L+K+Q ++
Subjt:  EKSLKDMNEKWVLLHIEGAELKARRASLLKQQLRI

A0A5A7T6T1 Serine/arginine repetitive matrix protein 1-like3.6e-9782.46Show/hide
Query:  MSTPRRSPPSNASPGTLTLTLTLTQSNNPTDQLHFTDEDELNLLNCYLQIARSENPTKNSQPTLDSPTLDRIQTAIGPKFTHSHIADKLHRLKLLYHKFA
        MSTP RS PSNASP TLTLTLTLTQ NN TDQLHFTDEDE+NLL  YLQI+RSENPTKNS PTLDSP  DR+QTA+GPKF+HS IADKLHRLKLLYHKFA
Subjt:  MSTPRRSPPSNASPGTLTLTLTLTQSNNPTDQLHFTDEDELNLLNCYLQIARSENPTKNSQPTLDSPTLDRIQTAIGPKFTHSHIADKLHRLKLLYHKFA

Query:  RTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKE----KVDLKNYPVLVGEFSRLFPGNGVWREGLRAIEEKSLKD
        RTKSFIKTPH RQIL+LGR IWGKSPTPITRKPQVISPSR LSRRIKQRS    +RKE     +DLKN+PVLV EFS+ FPGNGVWREGLR +EEK+LKD
Subjt:  RTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKE----KVDLKNYPVLVGEFSRLFPGNGVWREGLRAIEEKSLKD

Query:  MNEKWVLLHIEGAELKARRASLLKQQLR
        MNEKWVLLHIEGAELKARRA+LLKQQL+
Subjt:  MNEKWVLLHIEGAELKARRASLLKQQLR

A0A6P3Z773 probable transcription factor At1g617304.9e-3038.3Show/hide
Query:  STPRRSPPSNASPGTLTLT-LTLTQSNNPTDQLH----------FTDEDELNLLNCYLQIARSENPTKNSQPTLDSPTLDRIQTAIGPKFTHSHIADKLH
        S+ +R+ PS+ SP T T T    + S +P +Q            FT+EDE +LL  +  I +S  P+      ++SP LDRI+ ++G +F+H+ I DKL 
Subjt:  STPRRSPPSNASPGTLTLT-LTLTQSNNPTDQLH----------FTDEDELNLLNCYLQIARSENPTKNSQPTLDSPTLDRIQTAIGPKFTHSHIADKLH

Query:  RLKLLYHKFARTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAIE
        RL+L YHK ARTKS IKT H R++ ++ R IWG+            S SR   +  +++      R   V L+ +PVL  E   +  GN VW++GL  +E
Subjt:  RLKLLYHKFARTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAIE

Query:  EKSLKDMNEKWVLLHIEGAELKARRASLLKQQLRI
        EK+LK +NEKW+LL +E AE+ A RA L K+ + +
Subjt:  EKSLKDMNEKWVLLHIEGAELKARRASLLKQQLRI

V4RSW9 Uncharacterized protein9.0e-3236.48Show/hide
Query:  STPRRSPPSNASPGTLTLTLTLTQSNNPTDQLHFTDEDELNLLNCYLQIAR-----SENPTKNSQPTLDSPTLDRIQTAIGPKFTHSHIADKLHRLKLLY
        STPR+      SP        ++   +P  ++ FTD DE+ LL  + ++A      S + T NS  TLDS + +RI +++G KFTH+ I DK+ RL++ Y
Subjt:  STPRRSPPSNASPGTLTLTLTLTQSNNPTDQLHFTDEDELNLLNCYLQIAR-----SENPTKNSQPTLDSPTLDRIQTAIGPKFTHSHIADKLHRLKLLY

Query:  HKFARTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRAL---SRRIKQRSISRLSR-KEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAIEEK
        HK AR+KS IKTPH + + ++ + IWGK  T   ++ + +  S +        +Q++     R +E  +L  YPVL GE S+  P N VWRE L+++   
Subjt:  HKFARTKSFIKTPHHRQILELGRCIWGKSPTPITRKPQVISPSRAL---SRRIKQRSISRLSR-KEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAIEEK

Query:  SLKDMNEKWVLLHIEGAELKARRASLLKQQLRI
         LK+MN+KW+L+ IE A++ +++A L+K+Q ++
Subjt:  SLKDMNEKWVLLHIEGAELKARRASLLKQQLRI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAACGCCCCGCCGGTCACCGCCGTCCAACGCCTCTCCCGGAACCCTAACCCTAACCCTAACCCTAACCCAATCCAACAATCCAACCGATCAACTCCATTTCACCGA
CGAAGATGAACTCAATCTCCTGAATTGCTACCTCCAAATCGCCAGATCCGAAAACCCCACCAAGAATTCTCAACCCACTCTCGATTCTCCGACCTTGGACCGCATCCAGA
CCGCTATCGGACCCAAATTCACCCACTCCCACATCGCCGATAAGCTCCACCGCCTCAAACTCCTGTACCACAAATTCGCAAGAACCAAGTCTTTCATCAAGACTCCCCAC
CACCGTCAGATCCTCGAGCTTGGCCGCTGCATCTGGGGAAAATCCCCCACACCTATAACAAGAAAACCACAGGTAATTTCACCTTCACGAGCACTTTCACGAAGAATCAA
ACAAAGGTCAATCTCAAGACTCTCAAGGAAAGAAAAGGTTGATCTGAAGAACTATCCTGTTCTTGTGGGTGAATTTTCTCGGCTGTTTCCGGGCAATGGGGTGTGGAGAG
AAGGGCTGCGGGCAATAGAAGAGAAGAGTTTGAAGGATATGAATGAGAAGTGGGTTTTGTTGCATATTGAAGGGGCAGAGCTTAAGGCAAGAAGGGCTTCATTATTAAAG
CAGCAACTTAGAATTACGGAGACTTCTGAAGATGTGAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAACGCCCCGCCGGTCACCGCCGTCCAACGCCTCTCCCGGAACCCTAACCCTAACCCTAACCCTAACCCAATCCAACAATCCAACCGATCAACTCCATTTCACCGA
CGAAGATGAACTCAATCTCCTGAATTGCTACCTCCAAATCGCCAGATCCGAAAACCCCACCAAGAATTCTCAACCCACTCTCGATTCTCCGACCTTGGACCGCATCCAGA
CCGCTATCGGACCCAAATTCACCCACTCCCACATCGCCGATAAGCTCCACCGCCTCAAACTCCTGTACCACAAATTCGCAAGAACCAAGTCTTTCATCAAGACTCCCCAC
CACCGTCAGATCCTCGAGCTTGGCCGCTGCATCTGGGGAAAATCCCCCACACCTATAACAAGAAAACCACAGGTAATTTCACCTTCACGAGCACTTTCACGAAGAATCAA
ACAAAGGTCAATCTCAAGACTCTCAAGGAAAGAAAAGGTTGATCTGAAGAACTATCCTGTTCTTGTGGGTGAATTTTCTCGGCTGTTTCCGGGCAATGGGGTGTGGAGAG
AAGGGCTGCGGGCAATAGAAGAGAAGAGTTTGAAGGATATGAATGAGAAGTGGGTTTTGTTGCATATTGAAGGGGCAGAGCTTAAGGCAAGAAGGGCTTCATTATTAAAG
CAGCAACTTAGAATTACGGAGACTTCTGAAGATGTGAATTAG
Protein sequenceShow/hide protein sequence
MSTPRRSPPSNASPGTLTLTLTLTQSNNPTDQLHFTDEDELNLLNCYLQIARSENPTKNSQPTLDSPTLDRIQTAIGPKFTHSHIADKLHRLKLLYHKFARTKSFIKTPH
HRQILELGRCIWGKSPTPITRKPQVISPSRALSRRIKQRSISRLSRKEKVDLKNYPVLVGEFSRLFPGNGVWREGLRAIEEKSLKDMNEKWVLLHIEGAELKARRASLLK
QQLRITETSEDVN