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ClCG02G021840 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG02G021840
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRNase H domain-containing protein
Genome locationCG_Chr02:36294801..36295252
RNA-Seq ExpressionClCG02G021840
SyntenyClCG02G021840
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4346609.1 hypothetical protein G4B88_022024 [Cannabis sativa]4.9e-0632.58Show/hide
Query:  WILNYVDNFVQKSSGLRGLLLSQPSSLVSGKLFQQSPPPVDFLKLNVDASWSSLAQATGCGV-----DCNGCLSVVATNSSKVSLEAPLAEVWAILEGVC
        W LN ++ + ++       +L  P    S  + +  PPP  F+ +N+DA  S +  + GCG+     D  G L V  T+     +   LAE  AI  G+ 
Subjt:  WILNYVDNFVQKSSGLRGLLLSQPSSLVSGKLFQQSPPPVDFLKLNVDASWSSLAQATGCGV-----DCNGCLSVVATNSSKVSLEAPLAEVWAILEGVC

Query:  LVENLGLPNIQVESDCLSVVNLINKSSSSLSD
        L  N  +P I V SDC+ V+N +N +SS+ SD
Subjt:  LVENLGLPNIQVESDCLSVVNLINKSSSSLSD

XP_018832574.2 uncharacterized protein LOC109000195 [Juglans regia]2.9e-0638.53Show/hide
Query:  LSQPSSLVSGKLFQQSPPPVDFLKLNVDASWSSLAQATGCGV---DCNGCLSVVATNSSKVSLEAPLAEVWAILEGVCLVENLGLPNIQVESDCLSVVNL
        L   +++  GKL +  PPP  FLKLNVD +  +    +G GV   D  G + + AT       E    E+ A+L G+    +LG+PN+ VESDCL VV  
Subjt:  LSQPSSLVSGKLFQQSPPPVDFLKLNVDASWSSLAQATGCGV---DCNGCLSVVATNSSKVSLEAPLAEVWAILEGVCLVENLGLPNIQVESDCLSVVNL

Query:  INKSSSSLS
        +  S  SLS
Subjt:  INKSSSSLS

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]6.5e-0636.84Show/hide
Query:  PPPVDFLKLNVDASWSSLAQATGCGV---DCNGCLSVVATNSSKVSLEAPLAEVWAILEGVCLVENLGLPNIQVESDCLSVVNLINKSSSSLSDV
        PPP +  K+NVDA+++S   + G G    D NG +     N + +   A LAE  A+L G+ L  N  + ++ +ESDCL VV L+N +  S S++
Subjt:  PPPVDFLKLNVDASWSSLAQATGCGV---DCNGCLSVVATNSSKVSLEAPLAEVWAILEGVCLVENLGLPNIQVESDCLSVVNLINKSSSSLSDV

XP_042950559.1 uncharacterized protein LOC122282640 [Carya illinoinensis]1.4e-0535.48Show/hide
Query:  PPPVDFLKLNVDASWSSLAQATGCGV---DCNGCLSVVATNSSKVSLEAPLAEVWAILEGVCLVENLGLPNIQVESDCLSVVNLINKSSSSLS
        PP +D++K+NVDA+        G G+   DCNG + VV  + ++++  A +AE WA+L  + L   LG   +Q+E D   VV+ IN ++   S
Subjt:  PPPVDFLKLNVDASWSSLAQATGCGV---DCNGCLSVVATNSSKVSLEAPLAEVWAILEGVCLVENLGLPNIQVESDCLSVVNLINKSSSSLS

XP_042962672.1 uncharacterized protein LOC122296942 [Carya illinoinensis]1.4e-0537.25Show/hide
Query:  KLFQQSPPPVDFLKLNVDASWSSLAQATGCGVDCNGCLSVVATNSSKVSLE---APLAEVWAILEGVCLVENLGLPNIQVESDCLSVVNLINKSSSSLSD
        K+ +  PPP DFLKLN+D +        G GV        V    SKV  E   A   E  A+L G+ L    G+P I +E+DCL +VN +N++S  L+D
Subjt:  KLFQQSPPPVDFLKLNVDASWSSLAQATGCGVDCNGCLSVVATNSSKVSLE---APLAEVWAILEGVCLVENLGLPNIQVESDCLSVVNLINKSSSSLSD

Query:  VS
        ++
Subjt:  VS

TrEMBL top hitse value%identityAlignment
A0A2I4EHP6 uncharacterized protein LOC1089896792.6e-0527.52Show/hide
Query:  NKITHDL-PVPNSEVRSRWILNYVDNFVQKSSGLRGLLLSQPSSLVSGKLFQQSPPPVDFLKLNVDASWSSLAQATGCGV---DCNGCLSVVATNSSKVS
        NK+ H+L  +P  +V   +       F +K     GL +  PS  V   +++ SPPP ++ KLN D +       TG G    D +G + +  +   +  
Subjt:  NKITHDL-PVPNSEVRSRWILNYVDNFVQKSSGLRGLLLSQPSSLVSGKLFQQSPPPVDFLKLNVDASWSSLAQATGCGV---DCNGCLSVVATNSSKVS

Query:  LEAPLAEVWAILEGVCLVENLGLPNIQVESDCLSVVNLINKSSSSLSDV
        LE  + E  A+L G+    N+G+  +++ESDC  +V  +N  ++S + +
Subjt:  LEAPLAEVWAILEGVCLVENLGLPNIQVESDCLSVVNLINKSSSSLSDV

A0A2I4FLN6 uncharacterized protein LOC1090001951.4e-0638.53Show/hide
Query:  LSQPSSLVSGKLFQQSPPPVDFLKLNVDASWSSLAQATGCGV---DCNGCLSVVATNSSKVSLEAPLAEVWAILEGVCLVENLGLPNIQVESDCLSVVNL
        L   +++  GKL +  PPP  FLKLNVD +  +    +G GV   D  G + + AT       E    E+ A+L G+    +LG+PN+ VESDCL VV  
Subjt:  LSQPSSLVSGKLFQQSPPPVDFLKLNVDASWSSLAQATGCGV---DCNGCLSVVATNSSKVSLEAPLAEVWAILEGVCLVENLGLPNIQVESDCLSVVNL

Query:  INKSSSSLS
        +  S  SLS
Subjt:  INKSSSSLS

A0A444ZJA9 RNase H domain-containing protein5.9e-0538.2Show/hide
Query:  PPVDFLKLNVDASWSSLAQATGCGV---DCNGCLSVVATNSSKVSLEAPLAEVWAILEGVCLVENLGLPNIQVESDCLSVVNLINKSSS
        PP ++LKLN DA++S+  ++    V   DCNG L +  TNS   +  + LAE  AI E + L+ENL + N  +ESDC  ++  I + ++
Subjt:  PPVDFLKLNVDASWSSLAQATGCGV---DCNGCLSVVATNSSKVSLEAPLAEVWAILEGVCLVENLGLPNIQVESDCLSVVNLINKSSS

A0A7J6DLU8 Uncharacterized protein2.4e-0632.58Show/hide
Query:  WILNYVDNFVQKSSGLRGLLLSQPSSLVSGKLFQQSPPPVDFLKLNVDASWSSLAQATGCGV-----DCNGCLSVVATNSSKVSLEAPLAEVWAILEGVC
        W LN ++ + ++       +L  P    S  + +  PPP  F+ +N+DA  S +  + GCG+     D  G L V  T+     +   LAE  AI  G+ 
Subjt:  WILNYVDNFVQKSSGLRGLLLSQPSSLVSGKLFQQSPPPVDFLKLNVDASWSSLAQATGCGV-----DCNGCLSVVATNSSKVSLEAPLAEVWAILEGVC

Query:  LVENLGLPNIQVESDCLSVVNLINKSSSSLSD
        L  N  +P I V SDC+ V+N +N +SS+ SD
Subjt:  LVENLGLPNIQVESDCLSVVNLINKSSSSLSD

A0A7J6EAV9 RNase H domain-containing protein3.5e-0533.33Show/hide
Query:  WILNYVDNFVQKSSGLRGLLLSQPSSLVSGKLFQQSPPPVDFLKLNVDASWSSLAQATGCGV-----DCNGCLSVVATNSSKVSLEAPLAEVWAILEGVC
        W LN ++ +        G +L    +     + +  PPP  F+ +N DA  S +  + GCG+     D  G L V  T      +   LAEV AI  G+ 
Subjt:  WILNYVDNFVQKSSGLRGLLLSQPSSLVSGKLFQQSPPPVDFLKLNVDASWSSLAQATGCGV-----DCNGCLSVVATNSSKVSLEAPLAEVWAILEGVC

Query:  LVENLGLPNIQVESDCLSVVNLINKSSSSLSD
        L  N  +P I V SDCL V+N +N +SS+ SD
Subjt:  LVENLGLPNIQVESDCLSVVNLINKSSSSLSD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATAAAATCACACATGACTTACCTGTTCCAAATTCGGAGGTCCGCAGTAGATGGATCCTAAATTATGTCGATAATTTTGTGCAAAAGTCCTCTGGGTTGAGGGGTTTGCT
TCTGTCTCAACCTTCATCTCTTGTGTCAGGAAAACTATTCCAACAGAGCCCCCCACCTGTAGATTTTCTCAAATTAAATGTTGATGCCTCTTGGTCGTCTTTGGCTCAGG
CGACGGGTTGTGGAGTAGATTGTAATGGTTGTCTGAGTGTTGTTGCTACCAACTCATCGAAAGTCTCTTTGGAAGCCCCTCTAGCTGAGGTTTGGGCTATTTTAGAAGGT
GTATGTTTAGTAGAAAATTTGGGGCTACCCAATATTCAAGTGGAATCCGATTGTCTATCCGTTGTGAACCTCATAAACAAGTCATCTTCCTCCTTAAGTGATGTCAGCTG
C
mRNA sequenceShow/hide mRNA sequence
AATAAAATCACACATGACTTACCTGTTCCAAATTCGGAGGTCCGCAGTAGATGGATCCTAAATTATGTCGATAATTTTGTGCAAAAGTCCTCTGGGTTGAGGGGTTTGCT
TCTGTCTCAACCTTCATCTCTTGTGTCAGGAAAACTATTCCAACAGAGCCCCCCACCTGTAGATTTTCTCAAATTAAATGTTGATGCCTCTTGGTCGTCTTTGGCTCAGG
CGACGGGTTGTGGAGTAGATTGTAATGGTTGTCTGAGTGTTGTTGCTACCAACTCATCGAAAGTCTCTTTGGAAGCCCCTCTAGCTGAGGTTTGGGCTATTTTAGAAGGT
GTATGTTTAGTAGAAAATTTGGGGCTACCCAATATTCAAGTGGAATCCGATTGTCTATCCGTTGTGAACCTCATAAACAAGTCATCTTCCTCCTTAAGTGATGTCAGCTG
C
Protein sequenceShow/hide protein sequence
NKITHDLPVPNSEVRSRWILNYVDNFVQKSSGLRGLLLSQPSSLVSGKLFQQSPPPVDFLKLNVDASWSSLAQATGCGVDCNGCLSVVATNSSKVSLEAPLAEVWAILEG
VCLVENLGLPNIQVESDCLSVVNLINKSSSSLSDVSC