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ClCG03G001060 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG03G001060
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRibulose bisphosphate carboxylase large chain
Genome locationCG_Chr03:1065450..1066920
RNA-Seq ExpressionClCG03G001060
SyntenyClCG03G001060
Gene Ontology termsGO:0009853 - photorespiration (biological process)
GO:0019253 - reductive pentose-phosphate cycle (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0004497 - monooxygenase activity (molecular function)
GO:0016984 - ribulose-bisphosphate carboxylase activity (molecular function)
InterPro domainsIPR000685 - Ribulose bisphosphate carboxylase, large subunit, C-terminal
IPR020878 - Ribulose bisphosphate carboxylase, large chain, active site
IPR033966 - RuBisCO
IPR036376 - Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAP88014.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Ecballium elaterium]4.7e-5296.12Show/hide
Query:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG
        L QYGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC EAIYKSQAETGEIKGHYLNATAGTCEEMMKRA+FARELG
Subjt:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG

Query:  VPI
        VPI
Subjt:  VPI

AHI48854.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Bruguiera cylindrica]8.0e-5296.12Show/hide
Query:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG
        L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYK+QAETGEIKGHYLNATAGTCEEMMKRAVFARELG
Subjt:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG

Query:  VPI
        VPI
Subjt:  VPI

CAJ86723.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Athanasia trifurcata]1.0e-5196.12Show/hide
Query:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG
        L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC EAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG
Subjt:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG

Query:  VPI
        VPI
Subjt:  VPI

XP_042528805.1 ribulose bisphosphate carboxylase large chain-like [Dipodomys spectabilis]8.0e-5292.38Show/hide
Query:  IHLIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARE
        + +I+YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTK+DENVNSQPFMRWRDRFLFC EAIYK+QAETGEIKGHYLNATAGTCEEMMKRAVFARE
Subjt:  IHLIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARE

Query:  LGVPI
        LGVPI
Subjt:  LGVPI

YP_009476306.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Fraxinus excelsior]1.0e-5196.12Show/hide
Query:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG
        L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC EAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG
Subjt:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG

Query:  VPI
        VPI
Subjt:  VPI

TrEMBL top hitse value%identityAlignment
A0A0B4L8F2 Ribulose bisphosphate carboxylase large chain (Fragment)3.9e-5296.12Show/hide
Query:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG
        L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYK+QAETGEIKGHYLNATAGTCEEMMKRAVFARELG
Subjt:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG

Query:  VPI
        VPI
Subjt:  VPI

A0A0B4L8W1 Ribulose bisphosphate carboxylase large chain (Fragment)3.9e-5296.12Show/hide
Query:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG
        L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYK+QAETGEIKGHYLNATAGTCEEMMKRAVFARELG
Subjt:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG

Query:  VPI
        VPI
Subjt:  VPI

C4MXK3 Ribulose bisphosphate carboxylase large chain (Fragment)5.1e-5296.12Show/hide
Query:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG
        L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC EAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG
Subjt:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG

Query:  VPI
        VPI
Subjt:  VPI

Q7YKF7 Ribulose bisphosphate carboxylase large chain2.3e-5296.12Show/hide
Query:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG
        L QYGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC EAIYKSQAETGEIKGHYLNATAGTCEEMMKRA+FARELG
Subjt:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG

Query:  VPI
        VPI
Subjt:  VPI

Q8SLM7 Ribulose bisphosphate carboxylase large chain (Fragment)5.1e-5296.12Show/hide
Query:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG
        L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC EAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG
Subjt:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG

Query:  VPI
        VPI
Subjt:  VPI

SwissProt top hitse value%identityAlignment
P28455 Ribulose bisphosphate carboxylase large chain (Fragment)1.4e-5496.12Show/hide
Query:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG
        L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC EAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG
Subjt:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG

Query:  VPI
        VPI
Subjt:  VPI

P36485 Ribulose bisphosphate carboxylase large chain (Fragment)1.4e-5496.12Show/hide
Query:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG
        L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC EAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG
Subjt:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG

Query:  VPI
        VPI
Subjt:  VPI

P48686 Ribulose bisphosphate carboxylase large chain1.8e-5495.15Show/hide
Query:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG
        L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC EAIYKSQAETGEIKGHYLNATAGTCEEMMKRA+FARELG
Subjt:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG

Query:  VPI
        VPI
Subjt:  VPI

Q09X09 Ribulose bisphosphate carboxylase large chain1.4e-5496.12Show/hide
Query:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG
        L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC EAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG
Subjt:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG

Query:  VPI
        VPI
Subjt:  VPI

Q32625 Ribulose bisphosphate carboxylase large chain (Fragment)1.4e-5496.12Show/hide
Query:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG
        L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC EAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG
Subjt:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG

Query:  VPI
        VPI
Subjt:  VPI

Arabidopsis top hitse value%identityAlignment
AT2G07732.1 Ribulose bisphosphate carboxylase large chain, catalytic domain2.3e-4191.46Show/hide
Query:  KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI
        KNYGRAVYECLRGGL FTKDDENVNSQPFMRWRDRFLFC EA+YK+QAETG IKGHYLNAT GTCEEM+KRAVFARELGVPI
Subjt:  KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI

ATCG00490.1 ribulose-bisphosphate carboxylases2.8e-5595.15Show/hide
Query:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG
        L +YGRPLLGCTIKPKLGLS KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFC EAIYKSQAETGEIKGHYLNATAGTCEEM+KRAVFARELG
Subjt:  LIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG

Query:  VPI
        VPI
Subjt:  VPI

ATMG00280.1 Ribulose bisphosphate carboxylase large chain, catalytic domain6.1e-4292.68Show/hide
Query:  KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI
        KNYGRAVYECLRGGL FTKDDENVNSQPFMRWRDRFLFC EA+YK+QAETG IKGHYLNATAGTCEEM+KRAVFARELGVPI
Subjt:  KNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELGVPI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAACAATAGTTCCACAGTGGATTCATCTTATACAATATGGTCGCCCTCTATTGGGATGTACTATTAAACCAAAATTGGGATTATCCACTAAGAATTATGGTAGAGC
AGTTTATGAATGTCTACGCGGTGGACTTGATTTTACCAAAGATGATGAAAACGTGAATTCCCAACCATTTATGCGTTGGAGAGACCGTTTCCTATTTTGTGTGGAAGCTA
TTTATAAATCACAGGCTGAAACAGGTGAAATCAAGGGACATTACTTGAATGCTACTGCAGGTACATGCGAAGAAATGATGAAAAGGGCTGTATTTGCCCGAGAATTGGGA
GTTCCTATCTACATTATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGAACAATAGTTCCACAGTGGATTCATCTTATACAATATGGTCGCCCTCTATTGGGATGTACTATTAAACCAAAATTGGGATTATCCACTAAGAATTATGGTAGAGC
AGTTTATGAATGTCTACGCGGTGGACTTGATTTTACCAAAGATGATGAAAACGTGAATTCCCAACCATTTATGCGTTGGAGAGACCGTTTCCTATTTTGTGTGGAAGCTA
TTTATAAATCACAGGCTGAAACAGGTGAAATCAAGGGACATTACTTGAATGCTACTGCAGGTACATGCGAAGAAATGATGAAAAGGGCTGTATTTGCCCGAGAATTGGGA
GTTCCTATCTACATTATGTGA
Protein sequenceShow/hide protein sequence
MRTIVPQWIHLIQYGRPLLGCTIKPKLGLSTKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCVEAIYKSQAETGEIKGHYLNATAGTCEEMMKRAVFARELG
VPIYIM