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ClCG03G009100 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG03G009100
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionRetrotransposable element Tf2
Genome locationCG_Chr03:11829280..11834661
RNA-Seq ExpressionClCG03G009100
SyntenyClCG03G009100
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037879.1 26S proteasome regulatory subunit 4-like protein B-like [Cucumis melo var. makuwa]1.0e-1356.63Show/hide
Query:  MSVDNYAVDTDFEAVSRRRQGSAQQALSIQSSSTNLPPQPLTTLLRPSGANNSNKRPP--------SLVPKNPSTYSQVVKPR
        MS +NYA+D  FE VSRRRQGSAQ+ L+IQS S++LPP P T LLRPSG    NKR          S +P+NPS+YSQ+V+P+
Subjt:  MSVDNYAVDTDFEAVSRRRQGSAQQALSIQSSSTNLPPQPLTTLLRPSGANNSNKRPP--------SLVPKNPSTYSQVVKPR

KAA0038028.1 polyprotein [Cucumis melo var. makuwa]6.0e-1456.63Show/hide
Query:  MSVDNYAVDTDFEAVSRRRQGSAQQALSIQSSSTNLPPQPLTTLLRPSGANNSNKRPP--------SLVPKNPSTYSQVVKPR
        MS +NYA+D  FE VSRRRQGSAQ+ L+IQS S++LPP P T LLRPSG    NKR          S++P+NPS+YSQ+V+P+
Subjt:  MSVDNYAVDTDFEAVSRRRQGSAQQALSIQSSSTNLPPQPLTTLLRPSGANNSNKRPP--------SLVPKNPSTYSQVVKPR

KAA0056777.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.0e-1356.63Show/hide
Query:  MSVDNYAVDTDFEAVSRRRQGSAQQALSIQSSSTNLPPQPLTTLLRPSGANNSNKRPP--------SLVPKNPSTYSQVVKPR
        MS +NYA+D  FE VSRRRQGSAQ+ L+IQS S++LPP P T LLRPSG    NKR          S +P+NPS+YSQ+V+P+
Subjt:  MSVDNYAVDTDFEAVSRRRQGSAQQALSIQSSSTNLPPQPLTTLLRPSGANNSNKRPP--------SLVPKNPSTYSQVVKPR

KAA0063832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.0e-1356.63Show/hide
Query:  MSVDNYAVDTDFEAVSRRRQGSAQQALSIQSSSTNLPPQPLTTLLRPSGANNSNKRPP--------SLVPKNPSTYSQVVKPR
        MS +NYA+D  FE VSRRRQGSAQ+ L+IQS S++LPP P T LLRPSG    NKR          S +P+NPS+YSQ+V+P+
Subjt:  MSVDNYAVDTDFEAVSRRRQGSAQQALSIQSSSTNLPPQPLTTLLRPSGANNSNKRPP--------SLVPKNPSTYSQVVKPR

TYJ98086.1 hypothetical protein E5676_scaffold565G00190 [Cucumis melo var. makuwa]1.0e-1356.63Show/hide
Query:  MSVDNYAVDTDFEAVSRRRQGSAQQALSIQSSSTNLPPQPLTTLLRPSGANNSNKRPP--------SLVPKNPSTYSQVVKPR
        MS +NYA+D  FE VSRRRQGSAQ+ L+IQS S++LPP P T LLRPSG    NKR          S +P+NPS+YSQ+V+P+
Subjt:  MSVDNYAVDTDFEAVSRRRQGSAQQALSIQSSSTNLPPQPLTTLLRPSGANNSNKRPP--------SLVPKNPSTYSQVVKPR

TrEMBL top hitse value%identityAlignment
A0A5A7T5B0 Polyprotein2.9e-1456.63Show/hide
Query:  MSVDNYAVDTDFEAVSRRRQGSAQQALSIQSSSTNLPPQPLTTLLRPSGANNSNKRPP--------SLVPKNPSTYSQVVKPR
        MS +NYA+D  FE VSRRRQGSAQ+ L+IQS S++LPP P T LLRPSG    NKR          S++P+NPS+YSQ+V+P+
Subjt:  MSVDNYAVDTDFEAVSRRRQGSAQQALSIQSSSTNLPPQPLTTLLRPSGANNSNKRPP--------SLVPKNPSTYSQVVKPR

A0A5A7T991 26S proteasome regulatory subunit 4-like protein B-like4.9e-1456.63Show/hide
Query:  MSVDNYAVDTDFEAVSRRRQGSAQQALSIQSSSTNLPPQPLTTLLRPSGANNSNKRPP--------SLVPKNPSTYSQVVKPR
        MS +NYA+D  FE VSRRRQGSAQ+ L+IQS S++LPP P T LLRPSG    NKR          S +P+NPS+YSQ+V+P+
Subjt:  MSVDNYAVDTDFEAVSRRRQGSAQQALSIQSSSTNLPPQPLTTLLRPSGANNSNKRPP--------SLVPKNPSTYSQVVKPR

A0A5A7UVN1 Retrotransposable element Tf24.9e-1456.63Show/hide
Query:  MSVDNYAVDTDFEAVSRRRQGSAQQALSIQSSSTNLPPQPLTTLLRPSGANNSNKRPP--------SLVPKNPSTYSQVVKPR
        MS +NYA+D  FE VSRRRQGSAQ+ L+IQS S++LPP P T LLRPSG    NKR          S +P+NPS+YSQ+V+P+
Subjt:  MSVDNYAVDTDFEAVSRRRQGSAQQALSIQSSSTNLPPQPLTTLLRPSGANNSNKRPP--------SLVPKNPSTYSQVVKPR

A0A5A7V6D1 Retrotransposable element Tf24.9e-1456.63Show/hide
Query:  MSVDNYAVDTDFEAVSRRRQGSAQQALSIQSSSTNLPPQPLTTLLRPSGANNSNKRPP--------SLVPKNPSTYSQVVKPR
        MS +NYA+D  FE VSRRRQGSAQ+ L+IQS S++LPP P T LLRPSG    NKR          S +P+NPS+YSQ+V+P+
Subjt:  MSVDNYAVDTDFEAVSRRRQGSAQQALSIQSSSTNLPPQPLTTLLRPSGANNSNKRPP--------SLVPKNPSTYSQVVKPR

A0A5A7VIK9 Retrotransposable element Tf24.9e-1456.63Show/hide
Query:  MSVDNYAVDTDFEAVSRRRQGSAQQALSIQSSSTNLPPQPLTTLLRPSGANNSNKRPP--------SLVPKNPSTYSQVVKPR
        MS +NYA+D  FE VSRRRQGSAQ+ L+IQS S++LPP P T LLRPSG    NKR          S +P+NPS+YSQ+V+P+
Subjt:  MSVDNYAVDTDFEAVSRRRQGSAQQALSIQSSSTNLPPQPLTTLLRPSGANNSNKRPP--------SLVPKNPSTYSQVVKPR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGTAGATAACTACGCTGTGGATACCGACTTTGAAGCGGTATCTAGAAGGCGTCAAGGCTCGGCACAACAAGCACTCTCAATACAGTCAAGTTCAACTAACTTACC
TCCTCAACCATTGACAACACTATTGCGACCTTCGGGTGCAAACAACTCAAATAAGAGGCCTCCAAGTCTGGTTCCCAAGAACCCTTCAACATATTCTCAAGTGGTTAAGC
CTAGGCAAATGAGAGAAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCGTAGATAACTACGCTGTGGATACCGACTTTGAAGCGGTATCTAGAAGGCGTCAAGGCTCGGCACAACAAGCACTCTCAATACAGTCAAGTTCAACTAACTTACC
TCCTCAACCATTGACAACACTATTGCGACCTTCGGGTGCAAACAACTCAAATAAGAGGCCTCCAAGTCTGGTTCCCAAGAACCCTTCAACATATTCTCAAGTGGTTAAGC
CTAGGCAAATGAGAGAAAAATAG
Protein sequenceShow/hide protein sequence
MSVDNYAVDTDFEAVSRRRQGSAQQALSIQSSSTNLPPQPLTTLLRPSGANNSNKRPPSLVPKNPSTYSQVVKPRQMREK