; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG04G001400 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG04G001400
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionMitochondrial ribosomal protein L37
Genome locationCG_Chr04:4782711..4788249
RNA-Seq ExpressionClCG04G001400
SyntenyClCG04G001400
Gene Ontology termsGO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR013870 - Ribosomal protein L37, mitochondrial


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649745.1 hypothetical protein Csa_012025 [Cucumis sativus]7.4e-6091.11Show/hide
Query:  KKMGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSE
        KK  MSQIRLFRR+I+V++K+LIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYP WLW+LL+KHPPLSE
Subjt:  KKMGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSE

Query:  LRRKNVESLPYADLKRFVKLDTRARIKENNSIKAK
        LRRKN ESLPYADLKRF+KLDTRARIKENNSIKAK
Subjt:  LRRKNVESLPYADLKRFVKLDTRARIKENNSIKAK

XP_008442187.1 PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo]9.7e-6091.73Show/hide
Query:  MGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
        MG+SQIR FRR+I+V++K LIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYP WLWHLLDKHPPLSELR
Subjt:  MGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR

Query:  RKNVESLPYADLKRFVKLDTRARIKENNSIKAK
        RKN ESLPYADL+RFVKLDTRARIKENNSIKAK
Subjt:  RKNVESLPYADLKRFVKLDTRARIKENNSIKAK

XP_016899597.1 PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo]3.0e-6190.51Show/hide
Query:  EEKKMGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPL
        ++KKMG+SQIR FRR+I+V++K LIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYP WLWHLLDKHPPL
Subjt:  EEKKMGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPL

Query:  SELRRKNVESLPYADLKRFVKLDTRARIKENNSIKAK
        SELRRKN ESLPYADL+RFVKLDTRARIKENNSIKAK
Subjt:  SELRRKNVESLPYADLKRFVKLDTRARIKENNSIKAK

XP_038883606.1 39S ribosomal protein L54, mitochondrial isoform X1 [Benincasa hispida]7.4e-6093.38Show/hide
Query:  KKMGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSE
        KKM MSQIRLFRRSI VN+K LIQLTSVRTFAAGGKSKKGSKGGAAADAPKAS LSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSE
Subjt:  KKMGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSE

Query:  LRRKNVESLPYADLKRFVKLDTRARIKENNSIKAKN
        LRRKNVE+LPY DLKRFVKLDTRA+IKENNS KAKN
Subjt:  LRRKNVESLPYADLKRFVKLDTRARIKENNSIKAKN

XP_038883607.1 54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida]1.1e-5893.28Show/hide
Query:  MGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
        M MSQIRLFRRSI VN+K LIQLTSVRTFAAGGKSKKGSKGGAAADAPKAS LSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
Subjt:  MGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR

Query:  RKNVESLPYADLKRFVKLDTRARIKENNSIKAKN
        RKNVE+LPY DLKRFVKLDTRA+IKENNS KAKN
Subjt:  RKNVESLPYADLKRFVKLDTRARIKENNSIKAKN

TrEMBL top hitse value%identityAlignment
A0A0A0KYS4 Uncharacterized protein6.8e-5991.6Show/hide
Query:  MSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRK
        MSQ+RLFRR+I+V++K+LIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYP WLW+LL+KHPPLSELRRK
Subjt:  MSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRK

Query:  NVESLPYADLKRFVKLDTRARIKENNSIKAK
        N ESLPYADLKRF+KLDTRARIKENNSIKAK
Subjt:  NVESLPYADLKRFVKLDTRARIKENNSIKAK

A0A1S3B544 54S ribosomal protein L37, mitochondrial isoform X24.7e-6091.73Show/hide
Query:  MGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
        MG+SQIR FRR+I+V++K LIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYP WLWHLLDKHPPLSELR
Subjt:  MGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR

Query:  RKNVESLPYADLKRFVKLDTRARIKENNSIKAK
        RKN ESLPYADL+RFVKLDTRARIKENNSIKAK
Subjt:  RKNVESLPYADLKRFVKLDTRARIKENNSIKAK

A0A1S4DUD4 39S ribosomal protein L54, mitochondrial isoform X11.5e-6190.51Show/hide
Query:  EEKKMGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPL
        ++KKMG+SQIR FRR+I+V++K LIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYP WLWHLLDKHPPL
Subjt:  EEKKMGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPL

Query:  SELRRKNVESLPYADLKRFVKLDTRARIKENNSIKAK
        SELRRKN ESLPYADL+RFVKLDTRARIKENNSIKAK
Subjt:  SELRRKNVESLPYADLKRFVKLDTRARIKENNSIKAK

A0A5D3CXE8 39S ribosomal protein L541.5e-6190.51Show/hide
Query:  EEKKMGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPL
        ++KKMG+SQIR FRR+I+V++K LIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYP WLWHLLDKHPPL
Subjt:  EEKKMGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPL

Query:  SELRRKNVESLPYADLKRFVKLDTRARIKENNSIKAK
        SELRRKN ESLPYADL+RFVKLDTRARIKENNSIKAK
Subjt:  SELRRKNVESLPYADLKRFVKLDTRARIKENNSIKAK

A0A6J1JQ61 54S ribosomal protein L37, mitochondrial-like1.8e-5184.33Show/hide
Query:  MGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
        M MSQIRLFRRS+ +NTK LI+LT+VRTFAAGGK KKGSKGGAA DAPKASILSKEVKSTTVVGANILKEGADPK+MADSEYP WLW L+DK P LSELR
Subjt:  MGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR

Query:  RKNVESLPYADLKRFVKLDTRARIKENNSIKAKN
        RK+ ++LPY DLKRFVKLDTRARIKENNS KAKN
Subjt:  RKNVESLPYADLKRFVKLDTRARIKENNSIKAKN

SwissProt top hitse value%identityAlignment
Q9CPW3 39S ribosomal protein L54, mitochondrial4.1e-0537.5Show/hide
Query:  KGSKGGAAADAPK-ASILSKEVKSTT-VVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLDTRARIKENNSI
        KG KGG AA+A K   + +   + TT  +G NI KEG D  + ADSEYP WL+  ++  PP  +L     ES  Y  L R   +    R+ +N  +
Subjt:  KGSKGGAAADAPK-ASILSKEVKSTT-VVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLDTRARIKENNSI

Arabidopsis top hitse value%identityAlignment
AT3G01740.1 Mitochondrial ribosomal protein L373.3e-4268.42Show/hide
Query:  MSQIRLFRRSIVVNTKHLIQLTSVRTF-AAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRR
        M++I L R S   ++K +++    RTF AA  K+KKG KGG A+DAPK S L+KE+KSTTVVGAN LK+G+DPKI+ DS+YP WLWHLLDK P LSELRR
Subjt:  MSQIRLFRRSIVVNTKHLIQLTSVRTF-AAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRR

Query:  KNVESLPYADLKRFVKLDTRARIKENNSIKAKN
        KNVE+LPY DLKRFVKLDTR +IKENNSIKAKN
Subjt:  KNVESLPYADLKRFVKLDTRARIKENNSIKAKN

AT5G14290.1 Mitochondrial ribosomal protein L379.4e-3763.16Show/hide
Query:  MSQIRLFRRSIVVNTKHLIQLTSVRTFA-AGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRR
        M+ IR+F  SI   +K +++    RTFA A GK+KK  +G    DAPKAS LSKE+KS+ VV AN LK+G DPKI+ +S++P +LWHLLDK P LSELRR
Subjt:  MSQIRLFRRSIVVNTKHLIQLTSVRTFA-AGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRR

Query:  KNVESLPYADLKRFVKLDTRARIKENNSIKAKN
        KNVE+L + DLKRFVKLDTRARIKEN+SIKAKN
Subjt:  KNVESLPYADLKRFVKLDTRARIKENNSIKAKN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTCACAAAAACCTAACTCGCATAAGTCATACCCATCTCCATTTCCATCTCCCACCTCCCGCCGCAGTCGTCCGCCGCCGTACCTGATCGCCATTCCAGCC
AGTTGCGCCGCTGATCTTCCTTGGATCTCCGAGGAAAAAAAAATGGGTATGAGCCAAATCAGATTGTTTAGAAGGAGCATTGTTGTCAATACCAAACATCTAATA
CAACTGACATCAGTACGAACATTTGCTGCCGGAGGCAAATCAAAGAAGGGATCTAAAGGGGGTGCAGCTGCTGATGCTCCTAAAGCATCAATTCTAAGTAAAGAG
GTGAAGTCTACTACTGTAGTTGGTGCTAATATTCTCAAGGAAGGTGCAGATCCAAAAATTATGGCAGACTCAGAGTACCCTGTTTGGCTGTGGCATTTGCTTGAT
AAACATCCACCCCTAAGCGAACTACGAAGGAAGAATGTCGAAAGCCTTCCCTATGCAGATCTCAAACGCTTTGTTAAATTGGATACTCGAGCAAGGATCAAGGAA
AACAATTCTATTAAGGCCAAGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATTCACAAAAACCTAACTCGCATAAGTCATACCCATCTCCATTTCCATCTCCCACCTCCCGCCGCAGTCGTCCGCCGCCGTACCTGATCGCCATTCCAGCC
AGTTGCGCCGCTGATCTTCCTTGGATCTCCGAGGAAAAAAAAATGGGTATGAGCCAAATCAGATTGTTTAGAAGGAGCATTGTTGTCAATACCAAACATCTAATA
CAACTGACATCAGTACGAACATTTGCTGCCGGAGGCAAATCAAAGAAGGGATCTAAAGGGGGTGCAGCTGCTGATGCTCCTAAAGCATCAATTCTAAGTAAAGAG
GTGAAGTCTACTACTGTAGTTGGTGCTAATATTCTCAAGGAAGGTGCAGATCCAAAAATTATGGCAGACTCAGAGTACCCTGTTTGGCTGTGGCATTTGCTTGAT
AAACATCCACCCCTAAGCGAACTACGAAGGAAGAATGTCGAAAGCCTTCCCTATGCAGATCTCAAACGCTTTGTTAAATTGGATACTCGAGCAAGGATCAAGGAA
AACAATTCTATTAAGGCCAAGAATTGA
Protein sequenceShow/hide protein sequence
MNSQKPNSHKSYPSPFPSPTSRRSRPPPYLIAIPASCAADLPWISEEKKMGMSQIRLFRRSIVVNTKHLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKE
VKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLDTRARIKENNSIKAKN