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ClCG04G002860 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG04G002860
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionTy3-gypsy retrotransposon protein
Genome locationCG_Chr04:10834668..10836132
RNA-Seq ExpressionClCG04G002860
SyntenyClCG04G002860
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048105.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]1.1e-0538.37Show/hide
Query:  ELEKLFVTVTCFKGVALDWFHQKD----------LKMWILECFLSLRKGTICGHFLTIKLEMMVEAYPSLFDKLWSGSRLLLTSMI
        E EK+ V+  CF G  L+W+  ++          LK  +L  F S R+GT+CG FL I+ E MVE Y +LFDK    + ++LT+ +
Subjt:  ELEKLFVTVTCFKGVALDWFHQKD----------LKMWILECFLSLRKGTICGHFLTIKLEMMVEAYPSLFDKLWSGSRLLLTSMI

KAA0051119.1 uncharacterized protein E6C27_scaffold511G00660 [Cucumis melo var. makuwa]2.4e-0540.23Show/hide
Query:  NELEKLFVTVTCFKGVALDWFHQK----------DLKMWILECFLSLRKGTICGHFLTIKLEMMVEAYPSLFDKLWSGSRLLLTSMI
        ++ EKL V V  F G ALDW+  +          DLK  +L  F ++R+GT+ G FLTIK EM +E Y + FDKL +    L T ++
Subjt:  NELEKLFVTVTCFKGVALDWFHQK----------DLKMWILECFLSLRKGTICGHFLTIKLEMMVEAYPSLFDKLWSGSRLLLTSMI

KAA0057388.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]8.9e-0541.89Show/hide
Query:  ELEKLFVTVTCFKGVALDWFHQKD----------LKMWILECFLSLRKGTICGHFLTIKLEMMVEAYPSLFDKL
        E EK+ V+  CF G AL+W+  ++          LK  +L  F S R+GT+CG FL I+ E  VE Y + FDKL
Subjt:  ELEKLFVTVTCFKGVALDWFHQKD----------LKMWILECFLSLRKGTICGHFLTIKLEMMVEAYPSLFDKL

KAA0065392.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-0441.89Show/hide
Query:  ELEKLFVTVTCFKGVALDWFHQKD----------LKMWILECFLSLRKGTICGHFLTIKLEMMVEAYPSLFDKL
        E EK+ V+  CF G AL+W+  ++          LK  +L  F S R+GT+CG FL I+ E  VE Y + FDKL
Subjt:  ELEKLFVTVTCFKGVALDWFHQKD----------LKMWILECFLSLRKGTICGHFLTIKLEMMVEAYPSLFDKL

TYK19859.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.2e-0543.24Show/hide
Query:  ELEKLFVTVTCFKGVALDWFHQ----------KDLKMWILECFLSLRKGTICGHFLTIKLEMMVEAYPSLFDKL
        E EK+ V+  CF G AL+W+             +LK  +L  F S R+GT+CG FL I+ E  VE Y +LFDKL
Subjt:  ELEKLFVTVTCFKGVALDWFHQ----------KDLKMWILECFLSLRKGTICGHFLTIKLEMMVEAYPSLFDKL

TrEMBL top hitse value%identityAlignment
A0A5A7SMQ7 Ty3/gypsy retrotransposon protein5.7e-0541.89Show/hide
Query:  ELEKLFVTVTCFKGVALDWFHQKD----------LKMWILECFLSLRKGTICGHFLTIKLEMMVEAYPSLFDKL
        E EK+ V+  CF G AL+W+  ++          LK  +L  F S R+GT+CG FL I+ E  VE Y + FDKL
Subjt:  ELEKLFVTVTCFKGVALDWFHQKD----------LKMWILECFLSLRKGTICGHFLTIKLEMMVEAYPSLFDKL

A0A5A7U367 Transposon Tf2-1 polyprotein isoform X15.1e-0638.37Show/hide
Query:  ELEKLFVTVTCFKGVALDWFHQKD----------LKMWILECFLSLRKGTICGHFLTIKLEMMVEAYPSLFDKLWSGSRLLLTSMI
        E EK+ V+  CF G  L+W+  ++          LK  +L  F S R+GT+CG FL I+ E MVE Y +LFDK    + ++LT+ +
Subjt:  ELEKLFVTVTCFKGVALDWFHQKD----------LKMWILECFLSLRKGTICGHFLTIKLEMMVEAYPSLFDKLWSGSRLLLTSMI

A0A5A7UC53 Retrotrans_gag domain-containing protein1.1e-0540.23Show/hide
Query:  NELEKLFVTVTCFKGVALDWFHQK----------DLKMWILECFLSLRKGTICGHFLTIKLEMMVEAYPSLFDKLWSGSRLLLTSMI
        ++ EKL V V  F G ALDW+  +          DLK  +L  F ++R+GT+ G FLTIK EM +E Y + FDKL +    L T ++
Subjt:  NELEKLFVTVTCFKGVALDWFHQK----------DLKMWILECFLSLRKGTICGHFLTIKLEMMVEAYPSLFDKLWSGSRLLLTSMI

A0A5A7UQI8 Transposon Tf2-1 polyprotein isoform X14.3e-0541.89Show/hide
Query:  ELEKLFVTVTCFKGVALDWFHQKD----------LKMWILECFLSLRKGTICGHFLTIKLEMMVEAYPSLFDKL
        E EK+ V+  CF G AL+W+  ++          LK  +L  F S R+GT+CG FL I+ E  VE Y + FDKL
Subjt:  ELEKLFVTVTCFKGVALDWFHQKD----------LKMWILECFLSLRKGTICGHFLTIKLEMMVEAYPSLFDKL

A0A5D3D8R4 Ty3-gypsy retrotransposon protein2.5e-0543.24Show/hide
Query:  ELEKLFVTVTCFKGVALDWFHQ----------KDLKMWILECFLSLRKGTICGHFLTIKLEMMVEAYPSLFDKL
        E EK+ V+  CF G AL+W+             +LK  +L  F S R+GT+CG FL I+ E  VE Y +LFDKL
Subjt:  ELEKLFVTVTCFKGVALDWFHQ----------KDLKMWILECFLSLRKGTICGHFLTIKLEMMVEAYPSLFDKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAGTGTGCAAGCTCAGCAGCAGCAAAGAATAGATCCATTGTTTCCACATGGGACTATCCTTTTTTATCATCTGAGGGAGAGGGGGAGGGGGAGGTCAGCAGCAA
AGGTACTTGGAAGATGTTGGCATTTATAGGTGTGGAGGTTGTTTCTTGCAGAATAGATCAATTGTTTCCACATGAAGAGTCTAGTAGAAATCTGAAGTTAGTGGAAGGGT
TTGGGGATTCGGTGTCGCTTTTGGAGGAGTTGGTTCAGACAGAGAATGAATTGGAGAAGTTGTTCGTCACTGTGACCTGTTTCAAGGGAGTAGCCTTAGATTGGTTCCAC
CAAAAAGATTTGAAGATGTGGATCTTGGAATGTTTCCTATCTTTGCGGAAGGGCACCATTTGTGGTCACTTCTTGACCATTAAACTAGAAATGATGGTAGAAGCTTATCC
AAGTTTGTTTGACAAGCTGTGGAGTGGTAGTAGGCTGTTGCTCACGAGTATGATACGAATAGCCCAATTGGTTAGTCAACTGGTAGTGCTATTCTCCCTTTGGAGTGGTA
GTAGGCTGTTGCTCACGAGTATGATACGAATAGCCCAATTGGTTAGTCAACTGGTAGTGCTATTCTCCCTTTGGAGTGGTAGTAGGCTGTTGCTCACGAGTATGATACGA
ATAGCCCAATTGGTTGAGGATAGGGAGCTCACTTGTTTGGCAACATGCTTAAGTGGCCCAAGTATAGTAAATAGAGAAGACCTCATGCAAATGATTGCCTTGAGAGGAGA
GGCATTGTCGACGATGAAGCAAGAGGGGCCAATGAGGAGAAGTATATTGTGGGTCATTGATGCAAATCGAAAGAGGCGTGGGAGCTTAGGGTATTGGTTGGTCGTACATG
AGAATGCGGAGGAATTGGAGTTGATTGACGCAATGGAGGAGTTGGAAGAATTGATGGAGCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGAGTGTGCAAGCTCAGCAGCAGCAAAGAATAGATCCATTGTTTCCACATGGGACTATCCTTTTTTATCATCTGAGGGAGAGGGGGAGGGGGAGGTCAGCAGCAA
AGGTACTTGGAAGATGTTGGCATTTATAGGTGTGGAGGTTGTTTCTTGCAGAATAGATCAATTGTTTCCACATGAAGAGTCTAGTAGAAATCTGAAGTTAGTGGAAGGGT
TTGGGGATTCGGTGTCGCTTTTGGAGGAGTTGGTTCAGACAGAGAATGAATTGGAGAAGTTGTTCGTCACTGTGACCTGTTTCAAGGGAGTAGCCTTAGATTGGTTCCAC
CAAAAAGATTTGAAGATGTGGATCTTGGAATGTTTCCTATCTTTGCGGAAGGGCACCATTTGTGGTCACTTCTTGACCATTAAACTAGAAATGATGGTAGAAGCTTATCC
AAGTTTGTTTGACAAGCTGTGGAGTGGTAGTAGGCTGTTGCTCACGAGTATGATACGAATAGCCCAATTGGTTAGTCAACTGGTAGTGCTATTCTCCCTTTGGAGTGGTA
GTAGGCTGTTGCTCACGAGTATGATACGAATAGCCCAATTGGTTAGTCAACTGGTAGTGCTATTCTCCCTTTGGAGTGGTAGTAGGCTGTTGCTCACGAGTATGATACGA
ATAGCCCAATTGGTTGAGGATAGGGAGCTCACTTGTTTGGCAACATGCTTAAGTGGCCCAAGTATAGTAAATAGAGAAGACCTCATGCAAATGATTGCCTTGAGAGGAGA
GGCATTGTCGACGATGAAGCAAGAGGGGCCAATGAGGAGAAGTATATTGTGGGTCATTGATGCAAATCGAAAGAGGCGTGGGAGCTTAGGGTATTGGTTGGTCGTACATG
AGAATGCGGAGGAATTGGAGTTGATTGACGCAATGGAGGAGTTGGAAGAATTGATGGAGCTTTAG
Protein sequenceShow/hide protein sequence
MVECASSAAAKNRSIVSTWDYPFLSSEGEGEGEVSSKGTWKMLAFIGVEVVSCRIDQLFPHEESSRNLKLVEGFGDSVSLLEELVQTENELEKLFVTVTCFKGVALDWFH
QKDLKMWILECFLSLRKGTICGHFLTIKLEMMVEAYPSLFDKLWSGSRLLLTSMIRIAQLVSQLVVLFSLWSGSRLLLTSMIRIAQLVSQLVVLFSLWSGSRLLLTSMIR
IAQLVEDRELTCLATCLSGPSIVNREDLMQMIALRGEALSTMKQEGPMRRSILWVIDANRKRRGSLGYWLVVHENAEELELIDAMEELEELMEL