; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG04G003490 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG04G003490
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase domain-containing protein
Genome locationCG_Chr04:13480110..13485223
RNA-Seq ExpressionClCG04G003490
SyntenyClCG04G003490
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042317.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]4.7e-0933.83Show/hide
Query:  DEFTPLTRHRREAVVRSNQKGGLGMVVHNSFETPQGWVRTPWCWHWSMIGDGGLNDPMKCRAVHEFLQFSFVEVCYLVETRVQQENFDSVVARFGMKWGS
        DEFT +TR +RE V   ++   L + + +SF +    V     W  +++    L   +KC+AV +FL  S V  C L+ETRV++ NF++V  RFG  W  
Subjt:  DEFTPLTRHRREAVVRSNQKGGLGMVVHNSFETPQGWVRTPWCWHWSMIGDGGLNDPMKCRAVHEFLQFSFVEVCYLVETRVQQENFDSVVARFGMKWGS

Query:  VCRYSVAGVRRNWVKLHKPRVKLMASEVNDKFI
           YS + + R WV   K R       V+ +F+
Subjt:  VCRYSVAGVRRNWVKLHKPRVKLMASEVNDKFI

KAA0060724.1 hypothetical protein E6C27_scaffold72G00110 [Cucumis melo var. makuwa]2.8e-0931.07Show/hide
Query:  DVVLGNLVDVGDVERGSEAGMGKELVVEEA--EDEFTPLTRHRREAVVRSNQKGGLGMVVHNSFETP------QGWVRTPWCWHWS--MIGDG-GLNDPM
        +VVL +   + + E  S        V +E    D+FT +TR +RE V   ++   L + + N F +         W  T      S   + +G G+   +
Subjt:  DVVLGNLVDVGDVERGSEAGMGKELVVEEA--EDEFTPLTRHRREAVVRSNQKGGLGMVVHNSFETP------QGWVRTPWCWHWS--MIGDG-GLNDPM

Query:  KCRAVHEFLQFSFVEVCYLVETRVQQENFDSVVARFGMKWGSVCRYSVAGVRRNWVKLHKPRVKLMASEVNDKFIRG
        KC+ V +FL  S V  C L+E+R ++ NF+SV  RFG  W   C YS +GV R WV   K R       V+++F+ G
Subjt:  KCRAVHEFLQFSFVEVCYLVETRVQQENFDSVVARFGMKWGSVCRYSVAGVRRNWVKLHKPRVKLMASEVNDKFIRG

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]7.3e-1035.62Show/hide
Query:  DEFTPLTRHRREAVVRSNQKGGLGMVVHNSFETPQGWVRTPWCWHWSMI-----------GDGGLNDPMKCRAVHEFLQFSFVEVCYLVETRVQQENFDS
        DEFT +TR + E V   ++   + + + NSF +    V     W  ++I           G G L+D +K +AV +FL  S V  C L+ETRV++ NFD 
Subjt:  DEFTPLTRHRREAVVRSNQKGGLGMVVHNSFETPQGWVRTPWCWHWSMI-----------GDGGLNDPMKCRAVHEFLQFSFVEVCYLVETRVQQENFDS

Query:  VVARFGMKWGSVCRYSVAGVRRNWVKLHKPRVKLMASEVNDKFIRG
        V  RFG  W   C YS +GV R WV   K R       V+++F+ G
Subjt:  VVARFGMKWGSVCRYSVAGVRRNWVKLHKPRVKLMASEVNDKFIRG

XP_038888122.1 uncharacterized protein LOC120078021 [Benincasa hispida]1.4e-1350Show/hide
Query:  GGLNDPMKCRAVHEFLQFSFVEVCYLVETRVQQENFDSVVARFGMKWGSVCRYSVAGVRRNWVKLHKPRVKLMASEVNDKFIRG
        GGLNDP+KCR V +FL  S V  CYL++TRV +ENF  V+ +FG +W  VC YSV GV R W+   K   K       D+FI G
Subjt:  GGLNDPMKCRAVHEFLQFSFVEVCYLVETRVQQENFDSVVARFGMKWGSVCRYSVAGVRRNWVKLHKPRVKLMASEVNDKFIRG

XP_038895804.1 uncharacterized protein LOC120083970 [Benincasa hispida]1.3e-1144.12Show/hide
Query:  GLNDPMKCRAVHEFLQFSFVEVCYLVETRVQQENFDSVVARFGMKWGSVCRYSVAGVRRNWVKLHKPRVKLMASEVNDKFIRG-------EPGVHLKFFY
        GLNDP+KCR V +FL  S V    L+ETRV++ENF  V++RFG  W  +C YSV GV R WV   K           D+FI G          VH+   Y
Subjt:  GLNDPMKCRAVHEFLQFSFVEVCYLVETRVQQENFDSVVARFGMKWGSVCRYSVAGVRRNWVKLHKPRVKLMASEVNDKFIRG-------EPGVHLKFFY

Query:  AS
        AS
Subjt:  AS

TrEMBL top hitse value%identityAlignment
A0A5A7TKU4 Non-LTR retroelement reverse transcriptase-like protein2.3e-0933.83Show/hide
Query:  DEFTPLTRHRREAVVRSNQKGGLGMVVHNSFETPQGWVRTPWCWHWSMIGDGGLNDPMKCRAVHEFLQFSFVEVCYLVETRVQQENFDSVVARFGMKWGS
        DEFT +TR +RE V   ++   L + + +SF +    V     W  +++    L   +KC+AV +FL  S V  C L+ETRV++ NF++V  RFG  W  
Subjt:  DEFTPLTRHRREAVVRSNQKGGLGMVVHNSFETPQGWVRTPWCWHWSMIGDGGLNDPMKCRAVHEFLQFSFVEVCYLVETRVQQENFDSVVARFGMKWGS

Query:  VCRYSVAGVRRNWVKLHKPRVKLMASEVNDKFI
           YS + + R WV   K R       V+ +F+
Subjt:  VCRYSVAGVRRNWVKLHKPRVKLMASEVNDKFI

A0A5A7U3C2 Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein3.9e-0932.7Show/hide
Query:  EAGMGKELVVEEAEDEFTPLTRHRREAVVRSNQKGGLGMVVHNSFETPQGWVRTPWCWHWSMI----------GDGGLNDPMKCRAVHEFLQFSFVEVCY
        E G+GK        D+FT +TR + E V   ++   + +++ NSF +    V     W  S+I           D  +   MK +AV +FL  S +  C 
Subjt:  EAGMGKELVVEEAEDEFTPLTRHRREAVVRSNQKGGLGMVVHNSFETPQGWVRTPWCWHWSMI----------GDGGLNDPMKCRAVHEFLQFSFVEVCY

Query:  LVETRVQQENFDSVVARFGMKWGSVCRYSVAGVRRNWVKLHKPRVKLMASEVNDKFIRG
        L+ETRV++ NF SV  RFG  W   C YS +GV R WV   K R       ++++F+ G
Subjt:  LVETRVQQENFDSVVARFGMKWGSVCRYSVAGVRRNWVKLHKPRVKLMASEVNDKFIRG

A0A5A7V084 Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein1.3e-0931.07Show/hide
Query:  DVVLGNLVDVGDVERGSEAGMGKELVVEEA--EDEFTPLTRHRREAVVRSNQKGGLGMVVHNSFETP------QGWVRTPWCWHWS--MIGDG-GLNDPM
        +VVL +   + + E  S        V +E    D+FT +TR +RE V   ++   L + + N F +         W  T      S   + +G G+   +
Subjt:  DVVLGNLVDVGDVERGSEAGMGKELVVEEA--EDEFTPLTRHRREAVVRSNQKGGLGMVVHNSFETP------QGWVRTPWCWHWS--MIGDG-GLNDPM

Query:  KCRAVHEFLQFSFVEVCYLVETRVQQENFDSVVARFGMKWGSVCRYSVAGVRRNWVKLHKPRVKLMASEVNDKFIRG
        KC+ V +FL  S V  C L+E+R ++ NF+SV  RFG  W   C YS +GV R WV   K R       V+++F+ G
Subjt:  KCRAVHEFLQFSFVEVCYLVETRVQQENFDSVVARFGMKWGSVCRYSVAGVRRNWVKLHKPRVKLMASEVNDKFIRG

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein3.5e-1035.62Show/hide
Query:  DEFTPLTRHRREAVVRSNQKGGLGMVVHNSFETPQGWVRTPWCWHWSMI-----------GDGGLNDPMKCRAVHEFLQFSFVEVCYLVETRVQQENFDS
        DEFT +TR + E V   ++   + + + NSF +    V     W  ++I           G G L+D +K +AV +FL  S V  C L+ETRV++ NFD 
Subjt:  DEFTPLTRHRREAVVRSNQKGGLGMVVHNSFETPQGWVRTPWCWHWSMI-----------GDGGLNDPMKCRAVHEFLQFSFVEVCYLVETRVQQENFDS

Query:  VVARFGMKWGSVCRYSVAGVRRNWVKLHKPRVKLMASEVNDKFIRG
        V  RFG  W   C YS +GV R WV   K R       V+++F+ G
Subjt:  VVARFGMKWGSVCRYSVAGVRRNWVKLHKPRVKLMASEVNDKFIRG

A0A5D3D5X6 Reverse transcriptase domain-containing protein8.7e-0934.44Show/hide
Query:  EAGMGKELVVEEAEDEFTPLTRHRREAV-VRSNQKGGLGMVVHNSFETPQGWVRTPWCWHWSMIGDG-GLNDPMKCRAVHEFLQFSFVEVCYLVETRVQQ
        E G+GK        DEFT +TR + E V VR   K G    +                     + +G  + + MK +AV +FL  S V  C L+ETRV++
Subjt:  EAGMGKELVVEEAEDEFTPLTRHRREAV-VRSNQKGGLGMVVHNSFETPQGWVRTPWCWHWSMIGDG-GLNDPMKCRAVHEFLQFSFVEVCYLVETRVQQ

Query:  ENFDSVVARFGMKWGSVCRYSVAGVRRNWVKLHKPRVKLMASEVNDKFIRG
         NFDSV  RF   W   C YS +GV R WV   K R     + ++++FI G
Subjt:  ENFDSVVARFGMKWGSVCRYSVAGVRRNWVKLHKPRVKLMASEVNDKFIRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCAAGAAGATATTTTGTTCAAGTTCTTGTTACTGCCAATTATTTGCTTATCAGATGTTGTGTTGGGTAACCTAGTTGATGTTGGGGATGTTGAGAGGGGG
TCGGAGGCTGGGATGGGTAAGGAATTGGTGGTGGAGGAGGCTGAGGATGAGTTTACCCCTTTGACTAGGCATAGAAGGGAGGCAGTAGTGAGATCTAATCAGAAG
GGTGGTCTGGGGATGGTGGTTCACAACTCCTTTGAGACTCCGCAGGGATGGGTGAGGACTCCTTGGTGTTGGCATTGGTCGATGATAGGAGATGGTGTTTGGAAG
TACGATTTAATGCTTCAAGAAGATATTTTGTTCAAGTTCTTGTTACTGCCAATTATTTGCTTATCAGATGTTGTGTTGGGTAACCTAGTTGATGTTGGGGATGTT
GAGAGGGGGTCGGAGGCTGGGATGGGTAAGGAATTGGTGGTGGAGGAGGCTGAGGATGAGTTTACCCCTTTGACTAGGCATAGAAGGGAGGCAGTAGTGAGATCT
AATCAGAAGGGTGGTCTGGGGATGGTGGTTCACAACTCCTTTGAGACTCCGCAGGGATGGGTGAGGACTCCTTGGTGTTGGCATTGGTCGATGATAGGAGATGGT
GGTCTTAATGATCCCATGAAATGTAGAGCTGTGCATGAGTTTTTGCAGTTTTCTTTTGTTGAGGTGTGTTATCTTGTGGAGACTAGAGTGCAACAGGAGAATTTT
GATTCAGTTGTGGCTAGATTTGGGATGAAATGGGGAAGTGTGTGTAGATATAGTGTTGCGGGTGTGAGGCGGAACTGGGTCAAGCTCCATAAACCTAGAGTAAAA
CTCATGGCAAGTGAAGTAAATGACAAGTTTATAAGAGGTGAGCCAGGAGTCCATCTGAAATTTTTCTATGCATCTGTTAGTTTGGTTGTCCTCAAGGCTGTCTAT
GGGCAAGATTCCAAAGTCATAACCCTG
mRNA sequenceShow/hide mRNA sequence
ATGCTTCAAGAAGATATTTTGTTCAAGTTCTTGTTACTGCCAATTATTTGCTTATCAGATGTTGTGTTGGGTAACCTAGTTGATGTTGGGGATGTTGAGAGGGGG
TCGGAGGCTGGGATGGGTAAGGAATTGGTGGTGGAGGAGGCTGAGGATGAGTTTACCCCTTTGACTAGGCATAGAAGGGAGGCAGTAGTGAGATCTAATCAGAAG
GGTGGTCTGGGGATGGTGGTTCACAACTCCTTTGAGACTCCGCAGGGATGGGTGAGGACTCCTTGGTGTTGGCATTGGTCGATGATAGGAGATGGTGTTTGGAAG
TACGATTTAATGCTTCAAGAAGATATTTTGTTCAAGTTCTTGTTACTGCCAATTATTTGCTTATCAGATGTTGTGTTGGGTAACCTAGTTGATGTTGGGGATGTT
GAGAGGGGGTCGGAGGCTGGGATGGGTAAGGAATTGGTGGTGGAGGAGGCTGAGGATGAGTTTACCCCTTTGACTAGGCATAGAAGGGAGGCAGTAGTGAGATCT
AATCAGAAGGGTGGTCTGGGGATGGTGGTTCACAACTCCTTTGAGACTCCGCAGGGATGGGTGAGGACTCCTTGGTGTTGGCATTGGTCGATGATAGGAGATGGT
GGTCTTAATGATCCCATGAAATGTAGAGCTGTGCATGAGTTTTTGCAGTTTTCTTTTGTTGAGGTGTGTTATCTTGTGGAGACTAGAGTGCAACAGGAGAATTTT
GATTCAGTTGTGGCTAGATTTGGGATGAAATGGGGAAGTGTGTGTAGATATAGTGTTGCGGGTGTGAGGCGGAACTGGGTCAAGCTCCATAAACCTAGAGTAAAA
CTCATGGCAAGTGAAGTAAATGACAAGTTTATAAGAGGTGAGCCAGGAGTCCATCTGAAATTTTTCTATGCATCTGTTAGTTTGGTTGTCCTCAAGGCTGTCTAT
GGGCAAGATTCCAAAGTCATAACCCTG
Protein sequenceShow/hide protein sequence
MLQEDILFKFLLLPIICLSDVVLGNLVDVGDVERGSEAGMGKELVVEEAEDEFTPLTRHRREAVVRSNQKGGLGMVVHNSFETPQGWVRTPWCWHWSMIGDGVWK
YDLMLQEDILFKFLLLPIICLSDVVLGNLVDVGDVERGSEAGMGKELVVEEAEDEFTPLTRHRREAVVRSNQKGGLGMVVHNSFETPQGWVRTPWCWHWSMIGDG
GLNDPMKCRAVHEFLQFSFVEVCYLVETRVQQENFDSVVARFGMKWGSVCRYSVAGVRRNWVKLHKPRVKLMASEVNDKFIRGEPGVHLKFFYASVSLVVLKAVY
GQDSKVITL