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ClCG04G003590 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG04G003590
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionCCHC-type domain-containing protein
Genome locationCG_Chr04:14066248..14066802
RNA-Seq ExpressionClCG04G003590
SyntenyClCG04G003590
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER41574.1 cellular nucleic acid-binding protein [Striga asiatica]1.3e-1142.55Show/hide
Query:  EGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGRKFGIWLRESQSSKG
        EG GG   GRF     +VRV + +  PLK   ++++  +A+E  I + YE+LPDFCY+CG++GHV +ECE  +  S E   FG WL+ S    G
Subjt:  EGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGRKFGIWLRESQSSKG

KAA0046998.1 reverse transcriptase [Cucumis melo var. makuwa]2.3e-2153Show/hide
Query:  PLKHGTNIKLGTKAEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGRKFGIWLRESQSSKGVVRGRR-DINFQNQGGRGWGRGRG-TSFKKEE
        P  HGT  KLG  A+E+WIP++YEKLPDFCY CG+VGHV QEC+E  D+ +EG++FG+WLR+SQ+S+ + +GRR ++  Q    RG G G+G  +FK+++
Subjt:  PLKHGTNIKLGTKAEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGRKFGIWLRESQSSKGVVRGRR-DINFQNQGGRGWGRGRG-TSFKKEE

TXG70052.1 hypothetical protein EZV62_004987 [Acer yangbiense]4.4e-1236.36Show/hide
Query:  MCFSKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGR--
        MC +++ A  LA  I     +   DS    G+ ++V+V++ I +PLK    +KLG   E   + + YE+LPDFC+ CG++GH+ +EC   D+E+K+G   
Subjt:  MCFSKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGR--

Query:  ----KFGIWLRESQSSKGVVR
            +FG WL+   S +GV R
Subjt:  ----KFGIWLRESQSSKGVVR

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]1.3e-1130.73Show/hide
Query:  CFSKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEERWIPITYEKLPDFCYICGKVGHVFQECEEEDD--ESKEGRK
        C S + A  L   +   E + G  +  + G  ++VRVK+ + +PL+ G  +K  +  ++ W P+ YEKLPDFCY CGK+GH  +ECE+      +    +
Subjt:  CFSKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEERWIPITYEKLPDFCYICGKVGHVFQECEEEDD--ESKEGRK

Query:  FGIWLRESQSSKGVVR---------GRRDINFQNQGGRGWGRGRGTSFKKEER-----NPGRAEKQAAKTNLPERDDEE
        +G WLR +   K V           GR     Q  GGRG   GRG   +++E       P  + ++A +  +    +EE
Subjt:  FGIWLRESQSSKGVVR---------GRRDINFQNQGGRGWGRGRGTSFKKEER-----NPGRAEKQAAKTNLPERDDEE

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]3.1e-1336.97Show/hide
Query:  SKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEERWIPITYEKLPDFCYICGKVGHVFQECEEE----DDESKEGRK
        +K  A  L N+I  F  V   + G   G +L++RV + I +PL+ G  I +       WIPI YE+LPDFCY CG +GH   +C+       D+S+   +
Subjt:  SKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEERWIPITYEKLPDFCYICGKVGHVFQECEEE----DDESKEGRK

Query:  FGIWLRESQSSKGVVRGRR
        +G WLR   S  G  +GR+
Subjt:  FGIWLRESQSSKGVVRGRR

TrEMBL top hitse value%identityAlignment
A0A0A0LNB5 CCHC-type domain-containing protein2.6e-1858.33Show/hide
Query:  KKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEERWIPITYEKLPDFCYICGKVGHVFQECE
        +KY  AL NSI  FE V   +  R  GE LKVR K+ ++Q L H TNIKLG  A+E+ IP+TYEKL DFCY CG +GHV QECE
Subjt:  KKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEERWIPITYEKLPDFCYICGKVGHVFQECE

A0A5A7Q953 Cellular nucleic acid-binding protein6.2e-1242.55Show/hide
Query:  EGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGRKFGIWLRESQSSKG
        EG GG   GRF     +VRV + +  PLK   ++++  +A+E  I + YE+LPDFCY+CG++GHV +ECE  +  S E   FG WL+ S    G
Subjt:  EGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGRKFGIWLRESQSSKG

A0A5C7IND1 CCHC-type domain-containing protein2.1e-1236.36Show/hide
Query:  MCFSKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGR--
        MC +++ A  LA  I     +   DS    G+ ++V+V++ I +PLK    +KLG   E   + + YE+LPDFC+ CG++GH+ +EC   D+E+K+G   
Subjt:  MCFSKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGR--

Query:  ----KFGIWLRESQSSKGVVR
            +FG WL+   S +GV R
Subjt:  ----KFGIWLRESQSSKGVVR

A0A5D3C0K2 Reverse transcriptase1.1e-2153Show/hide
Query:  PLKHGTNIKLGTKAEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGRKFGIWLRESQSSKGVVRGRR-DINFQNQGGRGWGRGRG-TSFKKEE
        P  HGT  KLG  A+E+WIP++YEKLPDFCY CG+VGHV QEC+E  D+ +EG++FG+WLR+SQ+S+ + +GRR ++  Q    RG G G+G  +FK+++
Subjt:  PLKHGTNIKLGTKAEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGRKFGIWLRESQSSKGVVRGRR-DINFQNQGGRGWGRGRG-TSFKKEE

A0A6J1DU55 uncharacterized protein LOC1110231351.5e-1336.97Show/hide
Query:  SKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEERWIPITYEKLPDFCYICGKVGHVFQECEEE----DDESKEGRK
        +K  A  L N+I  F  V   + G   G +L++RV + I +PL+ G  I +       WIPI YE+LPDFCY CG +GH   +C+       D+S+   +
Subjt:  SKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEERWIPITYEKLPDFCYICGKVGHVFQECEEE----DDESKEGRK

Query:  FGIWLRESQSSKGVVRGRR
        +G WLR   S  G  +GR+
Subjt:  FGIWLRESQSSKGVVRGRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTTCAGCAAGAAATATGCTACAGCCCTGGCGAACTCAATATGCATTTTTGAAGGAGTGGGTGGAAGAGATTCAGGGCGTTTTGGGGGCGAAACTTTGAAGGTTAG
AGTTAAGATGTATATTCGGCAACCTCTAAAACATGGAACAAATATCAAGCTAGGAACCAAGGCGGAGGAAAGATGGATTCCCATTACTTACGAAAAATTACCAGATTTCT
GCTATATTTGCGGCAAGGTGGGTCATGTATTCCAAGAATGCGAAGAGGAGGACGATGAAAGTAAAGAGGGTCGAAAATTTGGAATATGGCTACGGGAATCTCAGAGTAGT
AAGGGAGTTGTTAGGGGAAGAAGAGATATCAATTTTCAAAACCAAGGTGGAAGAGGTTGGGGAAGGGGAAGAGGGACCAGTTTCAAGAAGGAAGAAAGGAACCCAGGGAG
AGCGGAAAAGCAAGCAGCAAAAACGAATCTGCCAGAAAGGGATGATGAGGAAATTGATTCCGTAAAAGGAAAAAACAAAGTGACCCAAAAACTTGATGCGCACTTTGAGT
GTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTTTCAGCAAGAAATATGCTACAGCCCTGGCGAACTCAATATGCATTTTTGAAGGAGTGGGTGGAAGAGATTCAGGGCGTTTTGGGGGCGAAACTTTGAAGGTTAG
AGTTAAGATGTATATTCGGCAACCTCTAAAACATGGAACAAATATCAAGCTAGGAACCAAGGCGGAGGAAAGATGGATTCCCATTACTTACGAAAAATTACCAGATTTCT
GCTATATTTGCGGCAAGGTGGGTCATGTATTCCAAGAATGCGAAGAGGAGGACGATGAAAGTAAAGAGGGTCGAAAATTTGGAATATGGCTACGGGAATCTCAGAGTAGT
AAGGGAGTTGTTAGGGGAAGAAGAGATATCAATTTTCAAAACCAAGGTGGAAGAGGTTGGGGAAGGGGAAGAGGGACCAGTTTCAAGAAGGAAGAAAGGAACCCAGGGAG
AGCGGAAAAGCAAGCAGCAAAAACGAATCTGCCAGAAAGGGATGATGAGGAAATTGATTCCGTAAAAGGAAAAAACAAAGTGACCCAAAAACTTGATGCGCACTTTGAGT
GTTAA
Protein sequenceShow/hide protein sequence
MCFSKKYATALANSICIFEGVGGRDSGRFGGETLKVRVKMYIRQPLKHGTNIKLGTKAEERWIPITYEKLPDFCYICGKVGHVFQECEEEDDESKEGRKFGIWLRESQSS
KGVVRGRRDINFQNQGGRGWGRGRGTSFKKEERNPGRAEKQAAKTNLPERDDEEIDSVKGKNKVTQKLDAHFEC