; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG04G004380 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG04G004380
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionSWIM-type domain-containing protein
Genome locationCG_Chr04:16942736..16946163
RNA-Seq ExpressionClCG04G004380
SyntenyClCG04G004380
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011654398.1 uncharacterized protein LOC105435382 [Cucumis sativus]4.8e-1366.67Show/hide
Query:  VVRRQLE---SISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLN
        ++R+Q E   S  V PINN E  V+ GD Q IVKL+LGSCSCRVWDF+EIPC+HALVVLW LN
Subjt:  VVRRQLE---SISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLN

XP_038880504.1 uncharacterized protein LOC120072166 [Benincasa hispida]1.4e-0962.5Show/hide
Query:  QLESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLN
        Q  S  VDPINN E KVIDGD+  +V L   SCSCRVWD  EIPCAHA  V+  LN
Subjt:  QLESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLN

XP_038896390.1 uncharacterized protein LOC120084653 [Benincasa hispida]6.5e-1051.52Show/hide
Query:  QLESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLNNKRGSKHLVD
        Q  S  V PI+N E  V+DGD Q +VKL+ GSCSCRVWDF +IPC+HAL +L    N+   + ++D
Subjt:  QLESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLNNKRGSKHLVD

XP_038902433.1 uncharacterized protein LOC120089079 [Benincasa hispida]2.9e-1062.5Show/hide
Query:  ILIDVVRRQLESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLN
        I++D   R  ES  VDPI+N E K++DG  Q IVKL+LGS S RVWDF EIPCAHAL VL  LN
Subjt:  ILIDVVRRQLESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLN

XP_038904248.1 uncharacterized protein LOC120090597 [Benincasa hispida]3.8e-1062.5Show/hide
Query:  QLESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLN
        Q  S  V PI+N +  V+DGD Q +VKL+LGSCSCRVWDF EI C+HALV+L  LN
Subjt:  QLESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLN

TrEMBL top hitse value%identityAlignment
A0A5A7T3G5 Protein FAR1-RELATED SEQUENCE 4-like6.6e-0863.27Show/hide
Query:  SISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVL
        S +V+ IN+ E +VIDG  Q IV+LD  SC+CRVWD +EIPCAHAL VL
Subjt:  SISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVL

A0A5A7US35 Protein FAR1-RELATED SEQUENCE 4-like6.6e-0865.22Show/hide
Query:  VDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVL
        VDPI+  E +V+D + Q IVKL++G CSCRVWD  EIPCAHAL VL
Subjt:  VDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVL

A0A5A7V9D5 SWIM-type domain-containing protein1.6e-0966Show/hide
Query:  VDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLN
        VDPI+  E +V DG+ Q IVKL++G CSCRVWD  EIPCAHAL VL  LN
Subjt:  VDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLN

A0A5D3C7L7 Uncharacterized protein2.3e-0864Show/hide
Query:  VDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLN
        VDPI+  E +V +G+ Q IVKL++  CSCRVWD  EIPCAHALVVL  LN
Subjt:  VDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLN

A0A5D3DAW8 Protein FAR1-RELATED SEQUENCE 4-like6.6e-0863.27Show/hide
Query:  SISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVL
        S +V+ IN+ E +VIDG  Q IV+LD  SC+CRVWD +EIPCAHAL VL
Subjt:  SISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGAAATAGAGTTTTATCTCTGTCTATCACGATAGACGATCTTTCAGTATGCATACTGATAGACGTTGTTAGACGTCAATTAGAGTCTATTAGTGTTGATCCCAT
TAACAACAATGAAATCAAAGTAATTGACGGTGATAGTCAATCCATAGTGAAGCTGGACTTGGGATCTTGCAGTTGTCGAGTATGGGATTTTAATGAAATTCCATGTGCTC
ATGCACTTGTTGTTCTTTGGAAGCTGAATAATAAGAGAGGATCGAAGCATCTTGTTGATCCTCCTGGAGTCATAGCAAGGTTACTTAACGGTGGTGTCCGTGATCTTGGA
GGTTTTGAGAAGCTTAAGAAAGAGCTTAAGAGAAGTCTAGTGAGCTCAGTGGGACCCATGAGAGCTCAAGAGGAGTCTAGTGAGCTCAATGGGACTCATGAGGCGGGAGC
TCAAGAGGAGTCTAGTGGACCCATGGGGAGTTTAAAAGACCCATGGGGAGATCTTGATGAGCTCGACCCAATTAAGAAAGCAGGACGACCTGACATAAGGGAGATCGACC
TGAGAAAGGAGGTCGACCTGGCAGGTCGAGCTAAGACAGAAGGTCAAGTTAAAAAAGGAAGTCGACCTGAGAAAATAGGTCGACCTGAGAAAGGAGATCGACTTGAGAAA
AGAGGTCGACCTAGCAGAGTCGAGCACATTGATGCCGAGATGTGTAATGGCTTTAACAATGATGACTTTAAGGGTCAGAGGATTGAGCGACTGCCGGCTTTCGGAGGAGC
ATGCGATTGCCAACCTCCAAGCTTGCAAAGAAAAAAAGTGATCAGGAAAGGTACACGTTGGAATAAGGGAAGAAGGGAGAAAGGAAAAATAGGGGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAGAAATAGAGTTTTATCTCTGTCTATCACGATAGACGATCTTTCAGTATGCATACTGATAGACGTTGTTAGACGTCAATTAGAGTCTATTAGTGTTGATCCCAT
TAACAACAATGAAATCAAAGTAATTGACGGTGATAGTCAATCCATAGTGAAGCTGGACTTGGGATCTTGCAGTTGTCGAGTATGGGATTTTAATGAAATTCCATGTGCTC
ATGCACTTGTTGTTCTTTGGAAGCTGAATAATAAGAGAGGATCGAAGCATCTTGTTGATCCTCCTGGAGTCATAGCAAGGTTACTTAACGGTGGTGTCCGTGATCTTGGA
GGTTTTGAGAAGCTTAAGAAAGAGCTTAAGAGAAGTCTAGTGAGCTCAGTGGGACCCATGAGAGCTCAAGAGGAGTCTAGTGAGCTCAATGGGACTCATGAGGCGGGAGC
TCAAGAGGAGTCTAGTGGACCCATGGGGAGTTTAAAAGACCCATGGGGAGATCTTGATGAGCTCGACCCAATTAAGAAAGCAGGACGACCTGACATAAGGGAGATCGACC
TGAGAAAGGAGGTCGACCTGGCAGGTCGAGCTAAGACAGAAGGTCAAGTTAAAAAAGGAAGTCGACCTGAGAAAATAGGTCGACCTGAGAAAGGAGATCGACTTGAGAAA
AGAGGTCGACCTAGCAGAGTCGAGCACATTGATGCCGAGATGTGTAATGGCTTTAACAATGATGACTTTAAGGGTCAGAGGATTGAGCGACTGCCGGCTTTCGGAGGAGC
ATGCGATTGCCAACCTCCAAGCTTGCAAAGAAAAAAAGTGATCAGGAAAGGTACACGTTGGAATAAGGGAAGAAGGGAGAAAGGAAAAATAGGGGAATAG
Protein sequenceShow/hide protein sequence
MDRNRVLSLSITIDDLSVCILIDVVRRQLESISVDPINNNEIKVIDGDSQSIVKLDLGSCSCRVWDFNEIPCAHALVVLWKLNNKRGSKHLVDPPGVIARLLNGGVRDLG
GFEKLKKELKRSLVSSVGPMRAQEESSELNGTHEAGAQEESSGPMGSLKDPWGDLDELDPIKKAGRPDIREIDLRKEVDLAGRAKTEGQVKKGSRPEKIGRPEKGDRLEK
RGRPSRVEHIDAEMCNGFNNDDFKGQRIERLPAFGGACDCQPPSLQRKKVIRKGTRWNKGRREKGKIGE