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ClCG04G004510 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG04G004510
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationCG_Chr04:17351910..17369358
RNA-Seq ExpressionClCG04G004510
SyntenyClCG04G004510
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041779.1 uncharacterized protein E6C27_scaffold67G001380 [Cucumis melo var. makuwa]4.6e-1150Show/hide
Query:  NVAVVPLDGVSFHFEEGASLWKYVVKRKIVDEKELSPSTQECLDLMDLLLKAQLDKTVLCLGPFYLQLVK
        NV  VP+DG+SFH EE    WK+V++R+IVD   +S   Q C+ +MDL+ KA L+KT+  +GPFY QL++
Subjt:  NVAVVPLDGVSFHFEEGASLWKYVVKRKIVDEKELSPSTQECLDLMDLLLKAQLDKTVLCLGPFYLQLVK
KAA0056211.1 uncharacterized protein E6C27_scaffold85G00030 [Cucumis melo var. makuwa]1.6e-1150Show/hide
Query:  NVAVVPLDGVSFHFEEGASLWKYVVKRKIVDEKELSPSTQECLDLMDLLLKAQLDKTVLCLGPFYLQLVK
        NV  VP+DG+SFH EE    WK+V++++IVDE  +S   Q C+ +MDL+ KA L+KT+  +GPFY QL++
Subjt:  NVAVVPLDGVSFHFEEGASLWKYVVKRKIVDEKELSPSTQECLDLMDLLLKAQLDKTVLCLGPFYLQLVK
XP_008457264.1 PREDICTED: uncharacterized protein LOC103496990 [Cucumis melo]7.0e-1251.43Show/hide
Query:  NVAVVPLDGVSFHFEEGASLWKYVVKRKIVDEKELSPSTQECLDLMDLLLKAQLDKTVLCLGPFYLQLVK
        NV  VP+DG+SFH EE    WK+V++R+IVDE  +S   Q C+ +MDL+ KA L+KT+  +GPFY QL++
Subjt:  NVAVVPLDGVSFHFEEGASLWKYVVKRKIVDEKELSPSTQECLDLMDLLLKAQLDKTVLCLGPFYLQLVK
XP_008465030.1 PREDICTED: uncharacterized protein LOC103502746 [Cucumis melo]1.6e-1150Show/hide
Query:  NVAVVPLDGVSFHFEEGASLWKYVVKRKIVDEKELSPSTQECLDLMDLLLKAQLDKTVLCLGPFYLQLVK
        NV  VP+DG+SFH EE    WK+V++++IVDE  +S   Q C+ +MDL+ KA L+KT+  +GPFY QL++
Subjt:  NVAVVPLDGVSFHFEEGASLWKYVVKRKIVDEKELSPSTQECLDLMDLLLKAQLDKTVLCLGPFYLQLVK
XP_038904458.1 uncharacterized protein LOC120090822 [Benincasa hispida]2.6e-1467.69Show/hide
Query:  NVAVVPLDGVSFHFEEGASLWKYVVKRKIVDEKELSPSTQECLDLMDLLLKAQLDKTVLCLGPFY
        NV  VPLDGVSFH EE ASLWKYVVKR IV EKELS  TQ+C+  M+L+  A L++TVL LGP+Y
Subjt:  NVAVVPLDGVSFHFEEGASLWKYVVKRKIVDEKELSPSTQECLDLMDLLLKAQLDKTVLCLGPFY
TrEMBL top hitse value%identityAlignment
A0A1S3C6D9 uncharacterized protein LOC1034969903.4e-1251.43Show/hide
Query:  NVAVVPLDGVSFHFEEGASLWKYVVKRKIVDEKELSPSTQECLDLMDLLLKAQLDKTVLCLGPFYLQLVK
        NV  VP+DG+SFH EE    WK+V++R+IVDE  +S   Q C+ +MDL+ KA L+KT+  +GPFY QL++
Subjt:  NVAVVPLDGVSFHFEEGASLWKYVVKRKIVDEKELSPSTQECLDLMDLLLKAQLDKTVLCLGPFYLQLVK
A0A1S3CMY0 uncharacterized protein LOC1035027467.6e-1250Show/hide
Query:  NVAVVPLDGVSFHFEEGASLWKYVVKRKIVDEKELSPSTQECLDLMDLLLKAQLDKTVLCLGPFYLQLVK
        NV  VP+DG+SFH EE    WK+V++++IVDE  +S   Q C+ +MDL+ KA L+KT+  +GPFY QL++
Subjt:  NVAVVPLDGVSFHFEEGASLWKYVVKRKIVDEKELSPSTQECLDLMDLLLKAQLDKTVLCLGPFYLQLVK
A0A5A7SZY3 Reverse transcriptase Ty1/copia-type domain-containing protein2.2e-1148.57Show/hide
Query:  NVAVVPLDGVSFHFEEGASLWKYVVKRKIVDEKELSPSTQECLDLMDLLLKAQLDKTVLCLGPFYLQLVK
        N+  VP+DG+SFH EE    WK+VV+R+I DE  +S   Q C+ +MDL+ +A L+KT+  +GPFY QL++
Subjt:  NVAVVPLDGVSFHFEEGASLWKYVVKRKIVDEKELSPSTQECLDLMDLLLKAQLDKTVLCLGPFYLQLVK
A0A5A7TK74 Uncharacterized protein2.2e-1150Show/hide
Query:  NVAVVPLDGVSFHFEEGASLWKYVVKRKIVDEKELSPSTQECLDLMDLLLKAQLDKTVLCLGPFYLQLVK
        NV  VP+DG+SFH EE    WK+V++R+IVD   +S   Q C+ +MDL+ KA L+KT+  +GPFY QL++
Subjt:  NVAVVPLDGVSFHFEEGASLWKYVVKRKIVDEKELSPSTQECLDLMDLLLKAQLDKTVLCLGPFYLQLVK
A0A5A7URQ6 Uncharacterized protein7.6e-1250Show/hide
Query:  NVAVVPLDGVSFHFEEGASLWKYVVKRKIVDEKELSPSTQECLDLMDLLLKAQLDKTVLCLGPFYLQLVK
        NV  VP+DG+SFH EE    WK+V++++IVDE  +S   Q C+ +MDL+ KA L+KT+  +GPFY QL++
Subjt:  NVAVVPLDGVSFHFEEGASLWKYVVKRKIVDEKELSPSTQECLDLMDLLLKAQLDKTVLCLGPFYLQLVK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACAGGAGGGCATCCAAAATGTTGAGATGCCTCTAGTGTATGGATATATCCTAGCAAAGAAATTTGAGTATCATCTTATATTCCTGCACAGTTTCGGCCCC
ACCACTGAAGATAAAGTGAAAACTAATGTAAGTTTCCCTAACCTTACCTTAACTAATTTGGTAGATCGAAGGAAAGAGATCTTTCCAACGAAAGTTGTTACTGAG
AATGTGTCGTCAAAAAATCCATCTAGGTCCGCCGAAGGTATGTCCGATGTTTGCACTCCTAAAATTGTTGCTAAAACCCTCACCTCTGTGGCTGATGTTGCCACC
GAAAGTAATGTTGAGAATCTTAGTTCTCCTGCTGAAAATGTGAAGAATATAATTTCTTTTTCCTCTAAGTCTAATGTTGATATATGTATGAATAAGTCTGCTGGT
ATTGATCTTCAGGTCAGTGCTGTGAATAGCCCATCCCCTGTTGTGAATAATTTGTCTCCTGTCAGTGGTGCTCATGATGAGCAAGAAATGACTCCAAAGGCTGCC
TCGGTGTCCCCAGAGTCTTCAAGTACTAAGTCAGAGAAAATGCTTTTTGATGAAGACAATGAGTGGGGTCTGTTAACTTGTTCGGAGGAAGAAACTCCTATCACC
ACCAGGTGTAATGTAGCTGTTGTTCCTTTAGATGGGGTATCCTTTCATTTTGAAGAGGGTGCCAGTCTTTGGAAATATGTTGTGAAACGCAAAATTGTTGATGAG
AAGGAACTGTCTCCAAGCACCCAAGAGTGCTTAGATCTTATGGATCTTCTGCTAAAAGCTCAGCTTGATAAAACTGTATTGTGTTTGGGCCCTTTCTATCTGCAA
TTGGTTAAAAGAATTTATGATTTATTGAAAATTTTAAAG
mRNA sequenceShow/hide mRNA sequence
ATGTTACAGGAGGGCATCCAAAATGTTGAGATGCCTCTAGTGTATGGATATATCCTAGCAAAGAAATTTGAGTATCATCTTATATTCCTGCACAGTTTCGGCCCC
ACCACTGAAGATAAAGTGAAAACTAATGTAAGTTTCCCTAACCTTACCTTAACTAATTTGGTAGATCGAAGGAAAGAGATCTTTCCAACGAAAGTTGTTACTGAG
AATGTGTCGTCAAAAAATCCATCTAGGTCCGCCGAAGGTATGTCCGATGTTTGCACTCCTAAAATTGTTGCTAAAACCCTCACCTCTGTGGCTGATGTTGCCACC
GAAAGTAATGTTGAGAATCTTAGTTCTCCTGCTGAAAATGTGAAGAATATAATTTCTTTTTCCTCTAAGTCTAATGTTGATATATGTATGAATAAGTCTGCTGGT
ATTGATCTTCAGGTCAGTGCTGTGAATAGCCCATCCCCTGTTGTGAATAATTTGTCTCCTGTCAGTGGTGCTCATGATGAGCAAGAAATGACTCCAAAGGCTGCC
TCGGTGTCCCCAGAGTCTTCAAGTACTAAGTCAGAGAAAATGCTTTTTGATGAAGACAATGAGTGGGGTCTGTTAACTTGTTCGGAGGAAGAAACTCCTATCACC
ACCAGGTGTAATGTAGCTGTTGTTCCTTTAGATGGGGTATCCTTTCATTTTGAAGAGGGTGCCAGTCTTTGGAAATATGTTGTGAAACGCAAAATTGTTGATGAG
AAGGAACTGTCTCCAAGCACCCAAGAGTGCTTAGATCTTATGGATCTTCTGCTAAAAGCTCAGCTTGATAAAACTGTATTGTGTTTGGGCCCTTTCTATCTGCAA
TTGGTTAAAAGAATTTATGATTTATTGAAAATTTTAAAG
Protein sequenceShow/hide protein sequence
MLQEGIQNVEMPLVYGYILAKKFEYHLIFLHSFGPTTEDKVKTNVSFPNLTLTNLVDRRKEIFPTKVVTENVSSKNPSRSAEGMSDVCTPKIVAKTLTSVADVAT
ESNVENLSSPAENVKNIISFSSKSNVDICMNKSAGIDLQVSAVNSPSPVVNNLSPVSGAHDEQEMTPKAASVSPESSSTKSEKMLFDEDNEWGLLTCSEEETPIT
TRCNVAVVPLDGVSFHFEEGASLWKYVVKRKIVDEKELSPSTQECLDLMDLLLKAQLDKTVLCLGPFYLQLVKRIYDLLKILK