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ClCG04G004700 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG04G004700
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionYcf15
Genome locationCG_Chr04:17808861..17809344
RNA-Seq ExpressionClCG04G004700
SyntenyClCG04G004700
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QZL38640.1 Ycf15 protein [Citrullus naudinianus]4.2e-1075Show/hide
Query:  MRVLTLHC--RIHVVYLKEVDLLASLMLQSSSCRSPFLLDPQIQNGGLISLQHNISHRKD
        MRV  LHC  RIHVVYLKEVDLLASLMLQSSS R+PFLLDPQ QNGGL+   H+   RKD
Subjt:  MRVLTLHC--RIHVVYLKEVDLLASLMLQSSSCRSPFLLDPQIQNGGLISLQHNISHRKD
YP_009326036.1 Ycf15 [Citrullus lanatus]4.2e-1075Show/hide
Query:  MRVLTLHC--RIHVVYLKEVDLLASLMLQSSSCRSPFLLDPQIQNGGLISLQHNISHRKD
        MRV  LHC  RIHVVYLKEVDLLASLMLQSSS R+PFLLDPQ QNGGL+   H+   RKD
Subjt:  MRVLTLHC--RIHVVYLKEVDLLASLMLQSSSCRSPFLLDPQIQNGGLISLQHNISHRKD
YP_009430673.1 ORF70 [Gynostemma cardiospermum]3.2e-1072.41Show/hide
Query:  VLTLHC--RIHVVYLKEVDLLASLMLQSSSCRSPFLLDPQIQNGGLISLQHNISHRKD
        ++ LHC  RIHVVYLKEVDLLASLMLQSSS R+PFLLDPQ QNGGL+   H+   RKD
Subjt:  VLTLHC--RIHVVYLKEVDLLASLMLQSSSCRSPFLLDPQIQNGGLISLQHNISHRKD
YP_009505126.1 Ycf15 [Cucurbita pepo]9.4e-1073.33Show/hide
Query:  MRVLTLHC--RIHVVYLKEVDLLASLMLQSSSCRSPFLLDPQIQNGGLISLQHNISHRKD
        MRV  LHC  RIHVVYLKEVDLLASLML+SSS R+PFLLDPQ QNGGL+   H+   RKD
Subjt:  MRVLTLHC--RIHVVYLKEVDLLASLMLQSSSCRSPFLLDPQIQNGGLISLQHNISHRKD
YP_009526348.1 ORF70 [Hemsleya lijiangensis]9.4e-1070.69Show/hide
Query:  VLTLHC--RIHVVYLKEVDLLASLMLQSSSCRSPFLLDPQIQNGGLISLQHNISHRKD
        ++ LHC  RIHVVYLKEVD LASLMLQSSS R+PFLLDPQ QNGGL+   H+   RKD
Subjt:  VLTLHC--RIHVVYLKEVDLLASLMLQSSSCRSPFLLDPQIQNGGLISLQHNISHRKD
TrEMBL top hitse value%identityAlignment
A0A191T4B9 ORF701.6e-1072.41Show/hide
Query:  VLTLHC--RIHVVYLKEVDLLASLMLQSSSCRSPFLLDPQIQNGGLISLQHNISHRKD
        ++ LHC  RIHVVYLKEVDLLASLMLQSSS R+PFLLDPQ QNGGL+   H+   RKD
Subjt:  VLTLHC--RIHVVYLKEVDLLASLMLQSSSCRSPFLLDPQIQNGGLISLQHNISHRKD
A0A286KU31 ORF701.6e-1072.41Show/hide
Query:  VLTLHC--RIHVVYLKEVDLLASLMLQSSSCRSPFLLDPQIQNGGLISLQHNISHRKD
        ++ LHC  RIHVVYLKEVDLLASLMLQSSS R+PFLLDPQ QNGGL+   H+   RKD
Subjt:  VLTLHC--RIHVVYLKEVDLLASLMLQSSSCRSPFLLDPQIQNGGLISLQHNISHRKD
A0A291IAH4 ORF701.6e-1072.41Show/hide
Query:  VLTLHC--RIHVVYLKEVDLLASLMLQSSSCRSPFLLDPQIQNGGLISLQHNISHRKD
        ++ LHC  RIHVVYLKEVDLLASLMLQSSS R+PFLLDPQ QNGGL+   H+   RKD
Subjt:  VLTLHC--RIHVVYLKEVDLLASLMLQSSSCRSPFLLDPQIQNGGLISLQHNISHRKD
A0A291IB04 ORF701.6e-1072.41Show/hide
Query:  VLTLHC--RIHVVYLKEVDLLASLMLQSSSCRSPFLLDPQIQNGGLISLQHNISHRKD
        ++ LHC  RIHVVYLKEVDLLASLMLQSSS R+PFLLDPQ QNGGL+   H+   RKD
Subjt:  VLTLHC--RIHVVYLKEVDLLASLMLQSSSCRSPFLLDPQIQNGGLISLQHNISHRKD
A0A291IB95 ORF701.6e-1072.41Show/hide
Query:  VLTLHC--RIHVVYLKEVDLLASLMLQSSSCRSPFLLDPQIQNGGLISLQHNISHRKD
        ++ LHC  RIHVVYLKEVDLLASLMLQSSS R+PFLLDPQ QNGGL+   H+   RKD
Subjt:  VLTLHC--RIHVVYLKEVDLLASLMLQSSSCRSPFLLDPQIQNGGLISLQHNISHRKD
SwissProt top hitse value%identityAlignment
Q1KXP9 Putative uncharacterized protein ycf152.2e-0970.37Show/hide
Query:  MRVLTLHC--RIHVVYLKEVDLLASLMLQSSSCRSPFLLDPQIQNGGLISLQHN
        MRV  LHC  RIHVVYLKEVDLLASL +QSSS R+PFLL PQ QN GL    H+
Subjt:  MRVLTLHC--RIHVVYLKEVDLLASLMLQSSSCRSPFLLDPQIQNGGLISLQHN
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGTCCTTACATTGCATTGTCGAATCCATGTTGTATATTTGAAAGAGGTTGACCTCCTTGCTTCTCTCATGTTACAATCCTCTTCCTGTCGATCCCCCTTT
CTCCTCGATCCACAAATACAAAATGGAGGACTAATATCCCTTCAACACAACATATCTCATCGAAAGGATCCCAAATACCCACCAAAGCATGAAAGGCAGAATCTT
TCAGAAAATGGATTCCTATTCGAAGAGTGCATAACCACATGCATAAGCTCACACAAACCCGTCAATTTTTGGATCCAATTCGGAATTTTCCTTGGGAGGTATCGG
GAAGGAATTGGAATATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGTCCTTACATTGCATTGTCGAATCCATGTTGTATATTTGAAAGAGGTTGACCTCCTTGCTTCTCTCATGTTACAATCCTCTTCCTGTCGATCCCCCTTT
CTCCTCGATCCACAAATACAAAATGGAGGACTAATATCCCTTCAACACAACATATCTCATCGAAAGGATCCCAAATACCCACCAAAGCATGAAAGGCAGAATCTT
TCAGAAAATGGATTCCTATTCGAAGAGTGCATAACCACATGCATAAGCTCACACAAACCCGTCAATTTTTGGATCCAATTCGGAATTTTCCTTGGGAGGTATCGG
GAAGGAATTGGAATATAA
Protein sequenceShow/hide protein sequence
MRVLTLHCRIHVVYLKEVDLLASLMLQSSSCRSPFLLDPQIQNGGLISLQHNISHRKDPKYPPKHERQNLSENGFLFEECITTCISSHKPVNFWIQFGIFLGRYR
EGIGI