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ClCG04G006730 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG04G006730
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionDNA-directed RNA polymerase subunit omega
Genome locationCG_Chr04:21589687..21591178
RNA-Seq ExpressionClCG04G006730
SyntenyClCG04G006730
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB5520078.1 hypothetical protein DKX38_024397 [Salix brachista]1.3e-3555.84Show/hide
Query:  VASDDGVHEHARVLLGVSGRNIDDVRFHHDGAV--AGRVEGRDGSVVRKSVFAADNTEANNMAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVA
        VA + G+HEH RVL  +S RNID VR H DGAV   GRVEG D  VVRK V   ++T+ N+M+F+VE+L+  G VG W+A ++  FTE+A V V++DDVA
Subjt:  VASDDGVHEHARVLLGVSGRNIDDVRFHHDGAV--AGRVEGRDGSVVRKSVFAADNTEANNMAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVA

Query:  ALDEVLVRLWVVETADDGPHGGDWGVDLLNDGGAALVQGNSVVVVTRHRVRNRG
        ALDE+L+ L V+E A+D P+GGDWG DLL   GAALV  N V VV RH + N G
Subjt:  ALDEVLVRLWVVETADDGPHGGDWGVDLLNDGGAALVQGNSVVVVTRHRVRNRG

KAF9665277.1 hypothetical protein SADUNF_Sadunf16G0105900 [Salix dunnii]2.0e-3354.84Show/hide
Query:  SVASDDGVHEHARVLLGVSGRNIDDVRFHHDGAVAG--RVEGRDGSVVRKSVFAADNTEANNMAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDV
        SVA + G+HEH RVL  +S RNID VR H DGAV    RVE  D  VVR+ V   DN + N+M+F+VE+L+  G VG W+A  +  FTE+A V V++DDV
Subjt:  SVASDDGVHEHARVLLGVSGRNIDDVRFHHDGAVAG--RVEGRDGSVVRKSVFAADNTEANNMAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDV

Query:  AALDEVLVRLWVVETADDGPHGGDWGVDLLNDGGAALVQGNSVVVVTRHRVRNRG
        AALDE+LV L V+E A+D P+GGDWG DLL    AALV  NSV V  RH + N G
Subjt:  AALDEVLVRLWVVETADDGPHGGDWGVDLLNDGGAALVQGNSVVVVTRHRVRNRG

KAG2404602.1 uncharacterized protein HKW66_Vig0115240 [Vigna angularis]2.0e-3357.24Show/hide
Query:  VASDDGVHEHARVLLGVSGRNIDDVRFHHDGAVAG-RVEGRDGSVVRKSVFAADNTEANNMAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVAA
        VA++DG+ EHARV+ GV+G +I DV    DGA  G RVEG DG+VV ++V AAD+ EAN++A VVE+++ LG  G  +AG+ A+  E ADVAV+ DDVAA
Subjt:  VASDDGVHEHARVLLGVSGRNIDDVRFHHDGAVAG-RVEGRDGSVVRKSVFAADNTEANNMAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVAA

Query:  LDEVLVRLWVVETADDGPHGGDWGVDLLNDGGAALVQGNSVVVVTRHRVRNR
        L EVLV LWVVE    GPHGGD   DLL+ GGAALV+G+ V VV  H V +R
Subjt:  LDEVLVRLWVVETADDGPHGGDWGVDLLNDGGAALVQGNSVVVVTRHRVRNR

KAG6603563.1 hypothetical protein SDJN03_04172, partial [Cucurbita argyrosperma subsp. sororia]6.5e-5675.32Show/hide
Query:  VASDDGVHEHARVLLGVSGRNIDDVRFHHDGAVAGRVEGRDGSVVRKSVFAADNTEANNMAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVAAL
        VA+DDGV EHARVLLGVS RNID+VRFHHDGAV GRVEG +G VV ++VFA+D+ EANNMAFVVENL+ LG +G WKAGNDA FTE A VA++DDDV A 
Subjt:  VASDDGVHEHARVLLGVSGRNIDDVRFHHDGAVAGRVEGRDGSVVRKSVFAADNTEANNMAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVAAL

Query:  DEVLVRLWVVETADDGPHGGDWGVDLLNDGGAALVQGNSVVVVTRHRVRNRGSA
        DEV V LWVVE A+DGPHGGD  VDLLNDGGAALV+  SVVV TRHRV +RGSA
Subjt:  DEVLVRLWVVETADDGPHGGDWGVDLLNDGGAALVQGNSVVVVTRHRVRNRGSA

XP_007140212.1 hypothetical protein PHAVU_008G093500g [Phaseolus vulgaris]2.5e-3154.25Show/hide
Query:  VASDDGVHEHARVLLGVSGRNIDDVRFHHDGAVAGR-VEGRDGSVVRKSVFAADNTEANNMAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVAA
        VA++DG+ EHARV+ GV+GR++ DV  H DGA  G  VEG DG+VV ++V AAD+ EAN++A VV++++ LG  G  +AG+ A+  E A +AV  DDVAA
Subjt:  VASDDGVHEHARVLLGVSGRNIDDVRFHHDGAVAGR-VEGRDGSVVRKSVFAADNTEANNMAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVAA

Query:  LDEVLVRLWVVETADDGPHGGDWGVDLLNDGGAALVQGNSVVVVTRHRVRNRG
        L EVLV L VVE    GPHGGD   DLL++GGAALV+ + V VV  HRV + G
Subjt:  LDEVLVRLWVVETADDGPHGGDWGVDLLNDGGAALVQGNSVVVVTRHRVRNRG

TrEMBL top hitse value%identityAlignment
A0A0A0L1E3 Uncharacterized protein5.8e-3483.16Show/hide
Query:  MAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVAALDEVLVRLWVVETADDGPHGGDWGVDLLNDGGAALVQGNSVVVVTRHRVRNRGSA
        M FVVENL+PLG VG  +AGNDA FTEA++VAVTDDDV ALDEVLVRL VVE ADDGPHGGD G+DLLNDGGAALV GNSVVVVTRHRVRN GSA
Subjt:  MAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVAALDEVLVRLWVVETADDGPHGGDWGVDLLNDGGAALVQGNSVVVVTRHRVRNRGSA

A0A0S3RUD5 Uncharacterized protein9.9e-3457.24Show/hide
Query:  VASDDGVHEHARVLLGVSGRNIDDVRFHHDGAVAG-RVEGRDGSVVRKSVFAADNTEANNMAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVAA
        VA++DG+ EHARV+ GV+G +I DV    DGA  G RVEG DG+VV ++V AAD+ EAN++A VVE+++ LG  G  +AG+ A+  E ADVAV+ DDVAA
Subjt:  VASDDGVHEHARVLLGVSGRNIDDVRFHHDGAVAG-RVEGRDGSVVRKSVFAADNTEANNMAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVAA

Query:  LDEVLVRLWVVETADDGPHGGDWGVDLLNDGGAALVQGNSVVVVTRHRVRNR
        L EVLV LWVVE    GPHGGD   DLL+ GGAALV+G+ V VV  H V +R
Subjt:  LDEVLVRLWVVETADDGPHGGDWGVDLLNDGGAALVQGNSVVVVTRHRVRNR

A0A5N5JL98 Uncharacterized protein6.2e-3655.84Show/hide
Query:  VASDDGVHEHARVLLGVSGRNIDDVRFHHDGAV--AGRVEGRDGSVVRKSVFAADNTEANNMAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVA
        VA + G+HEH RVL  +S RNID VR H DGAV   GRVEG D  VVRK V   ++T+ N+M+F+VE+L+  G VG W+A ++  FTE+A V V++DDVA
Subjt:  VASDDGVHEHARVLLGVSGRNIDDVRFHHDGAV--AGRVEGRDGSVVRKSVFAADNTEANNMAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVA

Query:  ALDEVLVRLWVVETADDGPHGGDWGVDLLNDGGAALVQGNSVVVVTRHRVRNRG
        ALDE+L+ L V+E A+D P+GGDWG DLL   GAALV  N V VV RH + N G
Subjt:  ALDEVLVRLWVVETADDGPHGGDWGVDLLNDGGAALVQGNSVVVVTRHRVRNRG

A5AI21 Uncharacterized protein9.6e-2950.34Show/hide
Query:  VASDDGVHEHARVLLGVSGRNIDDVRF--HHDGAVAGRVEGRDGSVVRKSVFAADNTEANNMAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVA
        VA +DGV ++ RV  GVS   ++++ F  H  GA  G VE  D SV+ ++V   D+ EA + A VVE+ + LG VGR +AG+D    E+AD+++ ++DVA
Subjt:  VASDDGVHEHARVLLGVSGRNIDDVRF--HHDGAVAGRVEGRDGSVVRKSVFAADNTEANNMAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVA

Query:  ALDEVLVRLWVVETADDGPHGGDWGVDLLNDGGAALVQGNSVVVV
         LDEVLV LW+VE ADDGP GGD G DLL+DGGAAL+  + V VV
Subjt:  ALDEVLVRLWVVETADDGPHGGDWGVDLLNDGGAALVQGNSVVVV

V7B6X3 Uncharacterized protein1.2e-3154.25Show/hide
Query:  VASDDGVHEHARVLLGVSGRNIDDVRFHHDGAVAGR-VEGRDGSVVRKSVFAADNTEANNMAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVAA
        VA++DG+ EHARV+ GV+GR++ DV  H DGA  G  VEG DG+VV ++V AAD+ EAN++A VV++++ LG  G  +AG+ A+  E A +AV  DDVAA
Subjt:  VASDDGVHEHARVLLGVSGRNIDDVRFHHDGAVAGR-VEGRDGSVVRKSVFAADNTEANNMAFVVENLKPLGTVGRWKAGNDAYFTEAADVAVTDDDVAA

Query:  LDEVLVRLWVVETADDGPHGGDWGVDLLNDGGAALVQGNSVVVVTRHRVRNRG
        L EVLV L VVE    GPHGGD   DLL++GGAALV+ + V VV  HRV + G
Subjt:  LDEVLVRLWVVETADDGPHGGDWGVDLLNDGGAALVQGNSVVVVTRHRVRNRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATTTACTATAGACTACATACTTTGCCCAAAACTCACGGCGGCGCCGCTCGGCTCCGGCGTGTCAGGTTCTCGGCGATCTGAGTCAGTTGCATCGGACGATGGTGT
CCACGAACACGCACGTGTCCTCCTCGGTGTTTCCGGGAGGAATATCGACGACGTACGATTCCACCACGACGGTGCCGTCGCCGGTAGGGTGGAGGGTCGTGACGGATCGG
TAGTTAGAAAGTCGGTGTTCGCCGCCGACAACACTGAAGCTAATAATATGGCGTTCGTCGTCGAGAATCTCAAGCCGCTCGGTACTGTTGGCCGCTGGAAGGCCGGAAAT
GACGCGTACTTCACGGAGGCTGCCGACGTTGCCGTCACCGACGATGACGTCGCAGCTCTTGACGAAGTGCTTGTACGCCTGTGGGTTGTCGAAACGGCGGACGACGGACC
ACACGGTGGAGACTGGGGCGTCGATCTCTTGAACGACGGCGGAGCAGCACTGGTTCAAGGCAACAGCGTGGTTGTGGTAACGCGCCACCGCGTCCGGAACCGTGGTAGCG
CGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGATTTACTATAGACTACATACTTTGCCCAAAACTCACGGCGGCGCCGCTCGGCTCCGGCGTGTCAGGTTCTCGGCGATCTGAGTCAGTTGCATCGGACGATGGTGT
CCACGAACACGCACGTGTCCTCCTCGGTGTTTCCGGGAGGAATATCGACGACGTACGATTCCACCACGACGGTGCCGTCGCCGGTAGGGTGGAGGGTCGTGACGGATCGG
TAGTTAGAAAGTCGGTGTTCGCCGCCGACAACACTGAAGCTAATAATATGGCGTTCGTCGTCGAGAATCTCAAGCCGCTCGGTACTGTTGGCCGCTGGAAGGCCGGAAAT
GACGCGTACTTCACGGAGGCTGCCGACGTTGCCGTCACCGACGATGACGTCGCAGCTCTTGACGAAGTGCTTGTACGCCTGTGGGTTGTCGAAACGGCGGACGACGGACC
ACACGGTGGAGACTGGGGCGTCGATCTCTTGAACGACGGCGGAGCAGCACTGGTTCAAGGCAACAGCGTGGTTGTGGTAACGCGCCACCGCGTCCGGAACCGTGGTAGCG
CGTGA
Protein sequenceShow/hide protein sequence
MRFTIDYILCPKLTAAPLGSGVSGSRRSESVASDDGVHEHARVLLGVSGRNIDDVRFHHDGAVAGRVEGRDGSVVRKSVFAADNTEANNMAFVVENLKPLGTVGRWKAGN
DAYFTEAADVAVTDDDVAALDEVLVRLWVVETADDGPHGGDWGVDLLNDGGAALVQGNSVVVVTRHRVRNRGSA