CuGenDBv2

Gene ID	ClCG04G006790
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	kinetochore protein SPC24 homolog
Genome location	CG_Chr04:21633716..21635958
RNA-Seq Expression	ClCG04G006790
Synteny	ClCG04G006790
Gene Ontology terms	GO:0051983 - regulation of chromosome segregation (biological process)
InterPro domains	IPR044951 - Kinetochore protein SPC24-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004148609.1 kinetochore protein SPC24 homolog [Cucumis sativus]

1.1e-91

86.07

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Query:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        MGDF++NS+IEE  SFADDLV +LKDP DV+NLNQCLEHFK LQSSCDDDF+SVQS ++DYEKKI+ACR+KTEEAKANTVADDEMEILEKELEEE+GKGH
Subjt:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMINS
        LLMEEIRLVTNEINELE +R+SVQERKQAMKKLEQQ +WAQRKLSMYASVTDIIPNM+DQSKISGHIVDRNKRVVQ+FEFDP K+SSFD CNG+WNMINS
Subjt:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMINS

Query:  P
        P
Subjt:  P

XP_008464222.1 PREDICTED: uncharacterized protein LOC103502153 [Cucumis melo]

3.0e-94

88.56

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Query:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        MGDF++NS+IEE  SFADDLV +LKDP DV NLNQCLEHFK LQSSCDDDF+SVQS ++DYEKKI+ACR+KTEEAKANTVADDEMEILEKELEEEVGKGH
Subjt:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMINS
        LLMEEIRLVTNEINELERQR+SVQERKQAMKKLEQQ +WAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQ+FEFDPTK+SSFD CNG+WNMINS
Subjt:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMINS

Query:  P
        P
Subjt:  P

XP_022950424.1 uncharacterized protein LOC111453528 [Cucurbita moschata]

2.6e-82

79.6

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Query:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        M DF+   +IEE +S+ DDLV LL D  DVQ LNQCLEHFK LQSSC DDFS+VQS +QDYEKKI+ACRQKTEEA+ +TV+DDE++ILEKEL EE+GKG+
Subjt:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMINS
        LLMEEIR++T+EIN+L+RQRISVQERKQAMKKLEQQ +  QRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPT +SSFDICNGIWNMINS
Subjt:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMINS

Query:  P
        P
Subjt:  P

XP_022978290.1 uncharacterized protein LOC111478320 [Cucurbita maxima]

1.8e-83

81.09

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Query:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        M DF+   +IEE +S+ DDLV LL D  DVQ LNQCLEHFK LQSSC DDFS+VQS +QDYEKKI+ACRQKTEEAKA+TVADDE++ILEKEL EE+GKG+
Subjt:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMINS
        LLMEEIR++T+EIN+L+RQRISVQERKQAMKKLEQQ +  QRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPT +SSFDICNGIWNMINS
Subjt:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMINS

Query:  P
        P
Subjt:  P

XP_038883770.1 kinetochore protein SPC24 homolog [Benincasa hispida]

3.0e-94

90.05

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Query:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        MGDF S S+IE FISFADDLV LLKDP DVQ+LNQCLEHFKALQSSCDDDFSSVQSL+QDYEKKI+AC+QKTEEAKANTV DDEM ILEKEL+EEVGKGH
Subjt:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMINS
        LLMEEIRLVTNEINELERQRIS+QERKQAMKKLEQQ +WAQRKLSMYASVTDIIPNMDDQSKISGHIVDR+KR+VQEFEFD TK+SSFDICNGIWNMINS
Subjt:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMINS

Query:  P
        P
Subjt:  P

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CKZ4 uncharacterized protein LOC103502153

1.4e-94

88.56

Show/hide

Query:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        MGDF++NS+IEE  SFADDLV +LKDP DV NLNQCLEHFK LQSSCDDDF+SVQS ++DYEKKI+ACR+KTEEAKANTVADDEMEILEKELEEEVGKGH
Subjt:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMINS
        LLMEEIRLVTNEINELERQR+SVQERKQAMKKLEQQ +WAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQ+FEFDPTK+SSFD CNG+WNMINS
Subjt:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMINS

Query:  P
        P
Subjt:  P

A0A6J1CR83 uncharacterized protein LOC111013852 isoform X1

1.2e-80

80.1

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Query:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        MGDFS   +IEE +S+ +DLV LLKD  DVQ LNQCLEH KALQS CDDDFS+V S +QDYEKKI+ACRQKTEEAKA TVAD EM++LE+ELEEE+ K H
Subjt:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMINS
        LLMEEIRLVT+EINEL+ QRISVQERKQAMKKLEQQ + AQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQ+FE DPTK S+FDICN IW+MINS
Subjt:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMINS

Query:  P
        P
Subjt:  P

A0A6J1GFS1 uncharacterized protein LOC111453528

1.3e-82

79.6

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Query:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        M DF+   +IEE +S+ DDLV LL D  DVQ LNQCLEHFK LQSSC DDFS+VQS +QDYEKKI+ACRQKTEEA+ +TV+DDE++ILEKEL EE+GKG+
Subjt:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMINS
        LLMEEIR++T+EIN+L+RQRISVQERKQAMKKLEQQ +  QRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPT +SSFDICNGIWNMINS
Subjt:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMINS

Query:  P
        P
Subjt:  P

A0A6J1HU69 uncharacterized protein LOC111466216

2.9e-79

79.6

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Query:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        MGDFS   +IEE +S+ +DLV LLKD  DVQ LNQCL+HF ALQSSC DDFS+V  L+QDYEKKI+ CR KTEEAKA TVADDEM+ILEKE+EEE+ + H
Subjt:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMINS
        LLMEEIRLVTN+INEL+RQRISVQERKQA KKLEQQ + AQRKLSMYASVTDIIPNMDD SKISGHIVDRNKRVVQ+FE DPTK SSFDICN IWNMINS
Subjt:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMINS

Query:  P
        P
Subjt:  P

A0A6J1IPN8 uncharacterized protein LOC111478320

8.7e-84

81.09

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Query:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        M DF+   +IEE +S+ DDLV LL D  DVQ LNQCLEHFK LQSSC DDFS+VQS +QDYEKKI+ACRQKTEEAKA+TVADDE++ILEKEL EE+GKG+
Subjt:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMINS
        LLMEEIR++T+EIN+L+RQRISVQERKQAMKKLEQQ +  QRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPT +SSFDICNGIWNMINS
Subjt:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMINS

Query:  P
        P
Subjt:  P

SwissProt top hits

e value

%identity

Alignment

Q67XT3 Kinetochore protein SPC24 homolog

3.4e-45

45.23

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Query:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        MG+ S N DIE+ +S+ DDL+ LL        ++Q  E FKAL  +C +DF+ +Q  I+D + K+ AC++KTEEA ++  A+DE+E L+KEL+EE+ +  
Subjt:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMIN
         L +E+RLV +E+ +L  Q  S+ E KQ+ K+  +  + A++KLSMYASVT++IP++DD SKISG++VDR KR++++F+F+  KM++++ CN IW++IN
Subjt:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMIN

Arabidopsis top hits

e value

%identity

Alignment

AT3G08880.1 unknown protein

2.4e-46

45.23

Show/hide

Query:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        MG+ S N DIE+ +S+ DDL+ LL        ++Q  E FKAL  +C +DF+ +Q  I+D + K+ AC++KTEEA ++  A+DE+E L+KEL+EE+ +  
Subjt:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMIN
         L +E+RLV +E+ +L  Q  S+ E KQ+ K+  +  + A++KLSMYASVT++IP++DD SKISG++VDR KR++++F+F+  KM++++ CN IW++IN
Subjt:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMIN

AT5G01570.1 unknown protein

1.9e-27

37.82

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Query:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        M D S N   E  IS+ D+L+ +L D      L Q LE  +A+  SCD+DF  +   +QD +KK+  C++KT+EA +    ++E+E L+KEL+EE+    
Subjt:  MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSS-FDICN
         L EE+           R     +E + A+K+ ++  +  + KL MYASVT +IPN+DD  K SG++V R+KR++ +FEFD  K +S ++ CN
Subjt:  LLMEEIRLVTNEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSS-FDICN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGAGATTTCTCCTCAAACTCCGACATCGAGGAGTTCATATCTTTTGCCGACGATTTGGTAGAACTCTTAAAGGACCCAATTGACGTTCAAAACTTGAATCAATGTCT
CGAACATTTCAAGGCCCTTCAATCTTCTTGTGACGATGATTTCAGTAGTGTTCAAAGTTTAATTCAAGATTATGAGAAGAAAATTCAGGCATGCCGGCAGAAAACAGAAG
AGGCGAAAGCGAACACTGTTGCGGATGATGAAATGGAGATTCTCGAAAAGGAACTCGAAGAGGAGGTTGGGAAAGGGCATTTGCTCATGGAGGAGATTAGACTGGTCACC
AATGAGATTAATGAACTAGAACGCCAAAGGATTTCTGTTCAAGAAAGGAAGCAGGCGATGAAGAAACTTGAGCAGCAAGGAATTTGGGCTCAAAGGAAGCTTTCAATGTA
TGCTTCGGTCACTGATATAATACCAAACATGGACGATCAGTCTAAAATTTCTGGCCATATTGTGGACAGAAATAAACGGGTTGTGCAAGAGTTTGAATTCGACCCCACTA
AGATGTCTTCTTTTGATATATGCAATGGCATTTGGAATATGATTAATTCCCCATAG

mRNA sequence

Show/hide mRNA sequence

CAAAGATCCCCTCCGAAGCAAACGCTCCCCACTGACTATTGAATTCAAATTTCCCTTACTTCTTCACAGCAAGCTCCTTGTTGATTTCTTCTTCAATTCAGAGAAATGGG
AGATTTCTCCTCAAACTCCGACATCGAGGAGTTCATATCTTTTGCCGACGATTTGGTAGAACTCTTAAAGGACCCAATTGACGTTCAAAACTTGAATCAATGTCTCGAAC
ATTTCAAGGCCCTTCAATCTTCTTGTGACGATGATTTCAGTAGTGTTCAAAGTTTAATTCAAGATTATGAGAAGAAAATTCAGGCATGCCGGCAGAAAACAGAAGAGGCG
AAAGCGAACACTGTTGCGGATGATGAAATGGAGATTCTCGAAAAGGAACTCGAAGAGGAGGTTGGGAAAGGGCATTTGCTCATGGAGGAGATTAGACTGGTCACCAATGA
GATTAATGAACTAGAACGCCAAAGGATTTCTGTTCAAGAAAGGAAGCAGGCGATGAAGAAACTTGAGCAGCAAGGAATTTGGGCTCAAAGGAAGCTTTCAATGTATGCTT
CGGTCACTGATATAATACCAAACATGGACGATCAGTCTAAAATTTCTGGCCATATTGTGGACAGAAATAAACGGGTTGTGCAAGAGTTTGAATTCGACCCCACTAAGATG
TCTTCTTTTGATATATGCAATGGCATTTGGAATATGATTAATTCCCCATAGTACTAGACATCAATTACATTGTGACTTAGAAGCTTACTATTGCTTGATCCTTCTTTCTT
CACTTCATGGTATTAAAATAGAACGTTTATTTTGTTGTATATGTATGTTTAAAGGACTACTCTCTAAAGTCCTGTCATTTATGATAACTTATTGTAAATCACAGCTCCTT
AGTCCTTGATGATTATTGAAGAAAAGAATGTCCTATGTTAGGCACCAAGCCATGAAAATGGTAAATGATGTTGCTCATTTTCATGGATATTTGATTTTCAAGGAAGCAAC
TAACTCTGTA

Protein sequence

Show/hide protein sequence

MGDFSSNSDIEEFISFADDLVELLKDPIDVQNLNQCLEHFKALQSSCDDDFSSVQSLIQDYEKKIQACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIRLVT
NEINELERQRISVQERKQAMKKLEQQGIWAQRKLSMYASVTDIIPNMDDQSKISGHIVDRNKRVVQEFEFDPTKMSSFDICNGIWNMINSP

ClCG04G006790 (gene) of Watermelon (Charleston Gray) v2.5 genome