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ClCG04G008070 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG04G008070
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionprotein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE-like
Genome locationCG_Chr04:22987211..22989205
RNA-Seq ExpressionClCG04G008070
SyntenyClCG04G008070
Gene Ontology termsGO:0009639 - response to red or far red light (biological process)
GO:0051457 - maintenance of protein location in nucleus (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR037766 - Protein FAR-RED ELONGATED HYPOCOTYL 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603645.1 Protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE protein, partial [Cucurbita argyrosperma subsp. sororia]1.1e-6369.39Show/hide
Query:  MDQNNHNHHHSSHCDTDRFSGFQSWNTEGFDVKKKRRLLIEQLSLPTPKLPCLG--LRSVSFPHGGGNSKFNKKPQEGEEGEESTLTKIAIEGKEMSKGQ
        MDQ NH  HH SH  T  FSGFQ W+TE FDVKKKR+LL EQLSLPTPKLPC G    S+SFP+G  + KFNKK +  EEG ES+LTK+A EGK+MS  +
Subjt:  MDQNNHNHHHSSHCDTDRFSGFQSWNTEGFDVKKKRRLLIEQLSLPTPKLPCLG--LRSVSFPHGGGNSKFNKKPQEGEEGEESTLTKIAIEGKEMSKGQ

Query:  VQMKGE----KDKLQWSYGPEEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWSADPEAESKTIKPTIDQEFEQYFSVLLPSLDP
        V+++GE    KDKL  +YG EEDLLEFGS  +S IYEQCCSD+ Q+LLLPT+SKHDFVLSSGRWS DPEAESK I PTIDQEFEQYFS +LPSLDP
Subjt:  VQMKGE----KDKLQWSYGPEEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWSADPEAESKTIKPTIDQEFEQYFSVLLPSLDP

KAG7033829.1 hypothetical protein SDJN02_03554, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-6369.39Show/hide
Query:  MDQNNHNHHHSSHCDTDRFSGFQSWNTEGFDVKKKRRLLIEQLSLPTPKLPCLG--LRSVSFPHGGGNSKFNKKPQEGEEGEESTLTKIAIEGKEMSKGQ
        MDQ NH  HH SH  T  FSGFQ W+TE FDVKKKR+LL EQLSLPTPKLPC G    S+SFP+G  + KFNKK +  EEG ES+LTK+A EGK+MS  +
Subjt:  MDQNNHNHHHSSHCDTDRFSGFQSWNTEGFDVKKKRRLLIEQLSLPTPKLPCLG--LRSVSFPHGGGNSKFNKKPQEGEEGEESTLTKIAIEGKEMSKGQ

Query:  VQMKGE----KDKLQWSYGPEEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWSADPEAESKTIKPTIDQEFEQYFSVLLPSLDP
        V+++GE    KDKL  +YG EEDLLEFGS  +S IYEQCCSD+ Q+LLLPT+SKHDFVLSSGRWS DPEAESK I PTIDQEFEQYFS +LPSLDP
Subjt:  VQMKGE----KDKLQWSYGPEEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWSADPEAESKTIKPTIDQEFEQYFSVLLPSLDP

XP_008448098.1 PREDICTED: uncharacterized protein LOC103490381 [Cucumis melo]2.2e-7071.71Show/hide
Query:  MDQNNHNHHHSSHCDTD---------------RFSGFQSWNTEGFDVKKKRRLLIEQLSLPTPKLPCLGLRSVSFPHGGGNSKFNKKPQEGEEGEESTLT
        MDQNN  HHH S  DTD               RF GFQSWNTE  DVKKKRRLLI+QLSLPT KLPC G RS+S PHG  N KFNKKP   +EGE STLT
Subjt:  MDQNNHNHHHSSHCDTD---------------RFSGFQSWNTEGFDVKKKRRLLIEQLSLPTPKLPCLGLRSVSFPHGGGNSKFNKKPQEGEEGEESTLT

Query:  KIAIEGKEMSKGQVQMKGEKDKLQWSYGPEEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWSADPEAESKTIKPTIDQEFEQYFSVLL
        KI I+GKEMS+ QV+M+GEKDKLQ SYG EEDLLEFG+  HSCIYE+CCS +AQSLLLPT+SK +FVLSSGRWS D E ESKT+KPTIDQEFEQYFSVLL
Subjt:  KIAIEGKEMSKGQVQMKGEKDKLQWSYGPEEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWSADPEAESKTIKPTIDQEFEQYFSVLL

Query:  PSLDP
        PSLDP
Subjt:  PSLDP

XP_011653642.1 uncharacterized protein LOC105435241 [Cucumis sativus]1.4e-6466.36Show/hide
Query:  MDQNNHNHHHSSHCDTD---------------RFSGFQSWNTEGFDVKKKRRLLIEQLSLPTPKLPCLGLRSVSFPHGGGNSKFNKKPQEGE--------
        MDQNN  HHH SH DTD               R  G QSWNTE  DVK KRRLLI+QLSLPT KLP  G RS+S PHG  N KFN +PQE E        
Subjt:  MDQNNHNHHHSSHCDTD---------------RFSGFQSWNTEGFDVKKKRRLLIEQLSLPTPKLPCLGLRSVSFPHGGGNSKFNKKPQEGE--------

Query:  ---EGEESTLTKIAIE-GKEMSKGQVQMKGEKDKLQWSYGPEEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWSADPEAESKTIKPTI
           EGEESTLTKIAI+  KEMS+ QV+M+G KDKLQ SYG EEDLLEFGS+E+ CIYE+CCS +AQ+LLLPT+SK +FVLSSGRWS D E ESK IKPTI
Subjt:  ---EGEESTLTKIAIE-GKEMSKGQVQMKGEKDKLQWSYGPEEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWSADPEAESKTIKPTI

Query:  DQEFEQYFSVLLPSLDP
        DQEFEQYFSVLLPSLDP
Subjt:  DQEFEQYFSVLLPSLDP

XP_038883311.1 protein FAR-RED ELONGATED HYPOCOTYL 1-like [Benincasa hispida]5.0e-7578.87Show/hide
Query:  MDQNNHNHHHSSHCDTD---RFSGFQSWNTEGFDVKKKRRLLIEQLSLPTPKLPCLGLRSVSFPHGGGNSKFNKKPQEGEEGEESTLTKIAIEGKEMSKG
        M+Q N  HHH SHCDTD    F+ FQ WNTEG DVKKKRRLLI+QLSLPT KLPC G  S+S PHG  N KF+KK QE EEGEEST T+IAIEGKE SK 
Subjt:  MDQNNHNHHHSSHCDTD---RFSGFQSWNTEGFDVKKKRRLLIEQLSLPTPKLPCLGLRSVSFPHGGGNSKFNKKPQEGEEGEESTLTKIAIEGKEMSKG

Query:  QVQMKGEKDKLQWSYGPEEDLLEFGSQEHSCIYEQCCSDTAQS-LLLPTESKHDFVLSSGRWSADPEAESKTIKPTIDQEFEQYFSVLLPSLDP
        QVQM+GEKDKLQ SYG EEDLLEFGS  H+CIYEQCCSD+AQS LLLPT SKHDFVLSSGRWS DPEAESKTIKPTIDQEFEQYFSV LPSLDP
Subjt:  QVQMKGEKDKLQWSYGPEEDLLEFGSQEHSCIYEQCCSDTAQS-LLLPTESKHDFVLSSGRWSADPEAESKTIKPTIDQEFEQYFSVLLPSLDP

TrEMBL top hitse value%identityAlignment
A0A0A0KZL8 Uncharacterized protein6.6e-6566.36Show/hide
Query:  MDQNNHNHHHSSHCDTD---------------RFSGFQSWNTEGFDVKKKRRLLIEQLSLPTPKLPCLGLRSVSFPHGGGNSKFNKKPQEGE--------
        MDQNN  HHH SH DTD               R  G QSWNTE  DVK KRRLLI+QLSLPT KLP  G RS+S PHG  N KFN +PQE E        
Subjt:  MDQNNHNHHHSSHCDTD---------------RFSGFQSWNTEGFDVKKKRRLLIEQLSLPTPKLPCLGLRSVSFPHGGGNSKFNKKPQEGE--------

Query:  ---EGEESTLTKIAIE-GKEMSKGQVQMKGEKDKLQWSYGPEEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWSADPEAESKTIKPTI
           EGEESTLTKIAI+  KEMS+ QV+M+G KDKLQ SYG EEDLLEFGS+E+ CIYE+CCS +AQ+LLLPT+SK +FVLSSGRWS D E ESK IKPTI
Subjt:  ---EGEESTLTKIAIE-GKEMSKGQVQMKGEKDKLQWSYGPEEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWSADPEAESKTIKPTI

Query:  DQEFEQYFSVLLPSLDP
        DQEFEQYFSVLLPSLDP
Subjt:  DQEFEQYFSVLLPSLDP

A0A1S3BJU4 uncharacterized protein LOC1034903811.0e-7071.71Show/hide
Query:  MDQNNHNHHHSSHCDTD---------------RFSGFQSWNTEGFDVKKKRRLLIEQLSLPTPKLPCLGLRSVSFPHGGGNSKFNKKPQEGEEGEESTLT
        MDQNN  HHH S  DTD               RF GFQSWNTE  DVKKKRRLLI+QLSLPT KLPC G RS+S PHG  N KFNKKP   +EGE STLT
Subjt:  MDQNNHNHHHSSHCDTD---------------RFSGFQSWNTEGFDVKKKRRLLIEQLSLPTPKLPCLGLRSVSFPHGGGNSKFNKKPQEGEEGEESTLT

Query:  KIAIEGKEMSKGQVQMKGEKDKLQWSYGPEEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWSADPEAESKTIKPTIDQEFEQYFSVLL
        KI I+GKEMS+ QV+M+GEKDKLQ SYG EEDLLEFG+  HSCIYE+CCS +AQSLLLPT+SK +FVLSSGRWS D E ESKT+KPTIDQEFEQYFSVLL
Subjt:  KIAIEGKEMSKGQVQMKGEKDKLQWSYGPEEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWSADPEAESKTIKPTIDQEFEQYFSVLL

Query:  PSLDP
        PSLDP
Subjt:  PSLDP

A0A6J1CPJ7 uncharacterized protein LOC1110135564.6e-4260.44Show/hide
Query:  HHSSHCDTDRFSGFQSWNTEGFDVKKKRRLLI--EQLSLPTPKLPCLG-LRSVSFPHGGGNSKFNKKPQEGEEGEESTLTKIAIEGKEMSKGQVQMKGEK
        HH SH  TD F GFQ WNT GFDVKKKR+LLI  EQLS PTPKLP  G   SVSFP+ GGN KFN+ PQ+  E EE  LTK A+E KE+SK +  M   +
Subjt:  HHSSHCDTDRFSGFQSWNTEGFDVKKKRRLLI--EQLSLPTPKLPCLG-LRSVSFPHGGGNSKFNKKPQEGEEGEESTLTKIAIEGKEMSKGQVQMKGEK

Query:  DKLQWSYGPEEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWSADP--EAESKTIKPTIDQEFEQYFSVLL
          L  SYG  EDLLEFGS +  C                 +SKHDFVLSSGRW+ DP  EAESKT+KPTIDQEFEQYFSVLL
Subjt:  DKLQWSYGPEEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWSADP--EAESKTIKPTIDQEFEQYFSVLL

A0A6J1GGJ6 protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE-like5.7e-6167.01Show/hide
Query:  MDQNNHNHHHSSHCDTDRFSGFQSWNTEGFDVKKKRRLLIEQLSLPTPKLPCLG--LRSVSFPHGGGNSKFNKK-PQEGEEGEESTLTKIAIEGKEMSKG
        MDQ NH  HH SH  T  FS FQ W+TE FDVKKKR+LL EQLSLPTPKLPC G    S+SFP+G  + KFNKK P+EG    ES+LTK+A EGK+MS  
Subjt:  MDQNNHNHHHSSHCDTDRFSGFQSWNTEGFDVKKKRRLLIEQLSLPTPKLPCLG--LRSVSFPHGGGNSKFNKK-PQEGEEGEESTLTKIAIEGKEMSKG

Query:  QVQMKGE----KDKLQWSYGPEEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWSADPEAESKTIKPTIDQEFEQYFSVLLPSLDP
        +V+++GE    KDKL  +YG EEDLLEFGS  +S IYE  CSD+ Q+LLLPT+S HDFVLSSGRWS DPEAESK I PTIDQEFEQYFS +LPSLDP
Subjt:  QVQMKGE----KDKLQWSYGPEEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWSADPEAESKTIKPTIDQEFEQYFSVLLPSLDP

A0A6J1IMA5 protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE-like1.9e-5666.32Show/hide
Query:  MDQNNHNHHHSSHCDTDRFSGFQSWNTEGFDVKKKRRLLIEQLSLPTPKLPCLG--LRSVSFPHGGGNSKFNKKPQEGEEGEESTLTKIAIEGKEMSKGQ
        MDQ NH  HH SH  T  FSGFQ W+TE FDVKKKR+LL EQLSLPTPKLPC G    S+SFP+G  + KFNKK +  EEG ES+LTK+A    E  + Q
Subjt:  MDQNNHNHHHSSHCDTDRFSGFQSWNTEGFDVKKKRRLLIEQLSLPTPKLPCLG--LRSVSFPHGGGNSKFNKKPQEGEEGEESTLTKIAIEGKEMSKGQ

Query:  VQMKGEKDKLQWSYGPEEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHD-FVLSSGRWSADPEAESKTIKPTIDQEFEQYFSVLLPSLDP
         +  G KDKL  +YG EEDLLEFGS  +S IYEQCCSD+ Q+LLLPT+S HD FVLSSGRWS DPEAESK + P IDQEFEQYFS +LPSLDP
Subjt:  VQMKGEKDKLQWSYGPEEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHD-FVLSSGRWSADPEAESKTIKPTIDQEFEQYFSVLLPSLDP

SwissProt top hitse value%identityAlignment
A8MR65 Protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE3.9e-0641.67Show/hide
Query:  EEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWS-ADPEAESKTIKPTIDQEFEQYFSVLL
        +ED  +F   E      +   +  Q +L P ES   ++LSS RWS ++ +++  T KPTIDQEFEQYFS L+
Subjt:  EEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWS-ADPEAESKTIKPTIDQEFEQYFSVLL

Q8S4Q6 Protein FAR-RED ELONGATED HYPOCOTYL 11.9e-0531.28Show/hide
Query:  EGFDVKKKRRLLIEQLS----LPTPKLPCLGLRSVSFPHGGGNSKFNKKPQEGEEGEESTLTKI--AIEGKEMSK---GQVQMKGEKDKLQWSYGPE---
        E  +V KKR+   +Q      LP  K  C    + S  +  GNS+ + +         +T  +    IE KE S    G+ +M   +  L + YG +   
Subjt:  EGFDVKKKRRLLIEQLS----LPTPKLPCLGLRSVSFPHGGGNSKFNKKPQEGEEGEESTLTKI--AIEGKEMSK---GQVQMKGEKDKLQWSYGPE---

Query:  -------EDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWSA--DPEAESKTIKPTIDQEFEQYFSVLL
               E++L    QE      + CS  A            FVLSSGRW+   D     +T KPTIDQEFEQYFS L+
Subjt:  -------EDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWSA--DPEAESKTIKPTIDQEFEQYFSVLL

Arabidopsis top hitse value%identityAlignment
AT2G37678.1 far-red elongated hypocotyl 11.4e-0631.28Show/hide
Query:  EGFDVKKKRRLLIEQLS----LPTPKLPCLGLRSVSFPHGGGNSKFNKKPQEGEEGEESTLTKI--AIEGKEMSK---GQVQMKGEKDKLQWSYGPE---
        E  +V KKR+   +Q      LP  K  C    + S  +  GNS+ + +         +T  +    IE KE S    G+ +M   +  L + YG +   
Subjt:  EGFDVKKKRRLLIEQLS----LPTPKLPCLGLRSVSFPHGGGNSKFNKKPQEGEEGEESTLTKI--AIEGKEMSK---GQVQMKGEKDKLQWSYGPE---

Query:  -------EDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWSA--DPEAESKTIKPTIDQEFEQYFSVLL
               E++L    QE      + CS  A            FVLSSGRW+   D     +T KPTIDQEFEQYFS L+
Subjt:  -------EDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWSA--DPEAESKTIKPTIDQEFEQYFSVLL

AT5G02200.1 far-red-elongated hypocotyl1-like2.8e-0741.67Show/hide
Query:  EEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWS-ADPEAESKTIKPTIDQEFEQYFSVLL
        +ED  +F   E      +   +  Q +L P ES   ++LSS RWS ++ +++  T KPTIDQEFEQYFS L+
Subjt:  EEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWS-ADPEAESKTIKPTIDQEFEQYFSVLL

AT5G02200.2 far-red-elongated hypocotyl1-like2.8e-0741.67Show/hide
Query:  EEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWS-ADPEAESKTIKPTIDQEFEQYFSVLL
        +ED  +F   E      +   +  Q +L P ES   ++LSS RWS ++ +++  T KPTIDQEFEQYFS L+
Subjt:  EEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWS-ADPEAESKTIKPTIDQEFEQYFSVLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCAAAACAACCATAACCATCATCATTCGTCTCACTGTGACACTGACAGATTTTCTGGCTTCCAATCATGGAATACAGAAGGCTTTGATGTGAAAAAGAAAAGAAG
ACTGCTAATTGAGCAACTAAGTCTACCCACACCAAAGCTACCGTGTTTGGGTTTAAGATCAGTTAGCTTTCCCCATGGAGGAGGTAACTCCAAGTTTAACAAAAAACCTC
AAGAAGGAGAAGAAGGAGAAGAAAGCACTCTTACAAAAATAGCAATAGAAGGTAAGGAGATGTCCAAAGGGCAGGTTCAAATGAAGGGTGAGAAAGACAAGTTGCAGTGG
AGCTATGGCCCTGAGGAAGATCTATTGGAGTTTGGAAGCCAAGAACATAGCTGCATTTATGAGCAATGTTGCAGTGACACTGCTCAAAGCTTGCTCCTCCCCACAGAGTC
CAAGCATGACTTTGTTTTGTCATCTGGGAGATGGAGCGCAGACCCAGAGGCAGAATCCAAGACTATCAAACCAACTATTGATCAAGAGTTTGAGCAGTACTTTTCTGTGC
TTTTGCCATCCTTGGATCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCAAAACAACCATAACCATCATCATTCGTCTCACTGTGACACTGACAGATTTTCTGGCTTCCAATCATGGAATACAGAAGGCTTTGATGTGAAAAAGAAAAGAAG
ACTGCTAATTGAGCAACTAAGTCTACCCACACCAAAGCTACCGTGTTTGGGTTTAAGATCAGTTAGCTTTCCCCATGGAGGAGGTAACTCCAAGTTTAACAAAAAACCTC
AAGAAGGAGAAGAAGGAGAAGAAAGCACTCTTACAAAAATAGCAATAGAAGGTAAGGAGATGTCCAAAGGGCAGGTTCAAATGAAGGGTGAGAAAGACAAGTTGCAGTGG
AGCTATGGCCCTGAGGAAGATCTATTGGAGTTTGGAAGCCAAGAACATAGCTGCATTTATGAGCAATGTTGCAGTGACACTGCTCAAAGCTTGCTCCTCCCCACAGAGTC
CAAGCATGACTTTGTTTTGTCATCTGGGAGATGGAGCGCAGACCCAGAGGCAGAATCCAAGACTATCAAACCAACTATTGATCAAGAGTTTGAGCAGTACTTTTCTGTGC
TTTTGCCATCCTTGGATCCTTGA
Protein sequenceShow/hide protein sequence
MDQNNHNHHHSSHCDTDRFSGFQSWNTEGFDVKKKRRLLIEQLSLPTPKLPCLGLRSVSFPHGGGNSKFNKKPQEGEEGEESTLTKIAIEGKEMSKGQVQMKGEKDKLQW
SYGPEEDLLEFGSQEHSCIYEQCCSDTAQSLLLPTESKHDFVLSSGRWSADPEAESKTIKPTIDQEFEQYFSVLLPSLDP