; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG04G011870 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG04G011870
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase, RNA-dependent DNA polymerase
Genome locationCG_Chr04:26840135..26841155
RNA-Seq ExpressionClCG04G011870
SyntenyClCG04G011870
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG55646.1 hypothetical protein EZV62_020902 [Acer yangbiense]3.9e-0936.21Show/hide
Query:  SSSTKNDSDLKVSKETQLVPNRYQVRSGTMPFGTPSFTNLLNQVTSIKLDKCNFLLWQNIVLPILRSYKLEGHLIEKTPPPEQSIIIPPYEG-ETNGLLP
        S++++  S L  S  +   P   Q  S +    +P F N LNQ  +IKLD+ NF+LW+ +V  I++ ++L+GHL    P P + +  P   G   +G   
Subjt:  SSSTKNDSDLKVSKETQLVPNRYQVRSGTMPFGTPSFTNLLNQVTSIKLDKCNFLLWQNIVLPILRSYKLEGHLIEKTPPPEQSIIIPPYEG-ETNGLLP

Query:  NLEYDIWLVADQILVG
        N EY+ WLV DQ+L+G
Subjt:  NLEYDIWLVADQILVG

TXG67243.1 hypothetical protein EZV62_008518 [Acer yangbiense]1.9e-0833.87Show/hide
Query:  SSSTKNDSDLKVSKETQLVPNRYQVRSGTMPFGTPSFTNLLNQVTSIKLDKCNFLLWQNIVLPILRSYKLEGHLIEKTPPPEQSIIIPPYEG--------
        S++++  S L  S  +   P   Q  S +    +P F N LNQ  +IKLD+ NF+LW+ +V  I++ ++L+GHL    P P + +  P   G        
Subjt:  SSSTKNDSDLKVSKETQLVPNRYQVRSGTMPFGTPSFTNLLNQVTSIKLDKCNFLLWQNIVLPILRSYKLEGHLIEKTPPPEQSIIIPPYEG--------

Query:  -ETNGLLPNLEYDIWLVADQILVG
           +G   N EY+ WLV DQ+L+G
Subjt:  -ETNGLLPNLEYDIWLVADQILVG

TXG69253.1 hypothetical protein EZV62_004188 [Acer yangbiense]1.9e-0833.87Show/hide
Query:  SSSTKNDSDLKVSKETQLVPNRYQVRSGTMPFGTPSFTNLLNQVTSIKLDKCNFLLWQNIVLPILRSYKLEGHLIEKTPPPEQSIIIPPYEG--------
        S++++  S L  S  +   P   Q  S +    +P F N LNQ  +IKLD+ NF+LW+ +V  I++ ++L+GHL    P P + +  P   G        
Subjt:  SSSTKNDSDLKVSKETQLVPNRYQVRSGTMPFGTPSFTNLLNQVTSIKLDKCNFLLWQNIVLPILRSYKLEGHLIEKTPPPEQSIIIPPYEG--------

Query:  -ETNGLLPNLEYDIWLVADQILVG
           +G   N EY+ WLV DQ+L+G
Subjt:  -ETNGLLPNLEYDIWLVADQILVG

XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]7.8e-1043.96Show/hide
Query:  FGTPSFTNLLNQVTSIKLDKCNFLLWQNIVLPILRSYKLEGHLIEKTPPPEQSIIIPP----YEGETNGLLP---NLEYDIWLVADQILVG
        F +P    LLNQ+TSIK+D+ NFLLWQN+ LPILRSYKL  +L    P P   ++        EG T+       N  Y+ W+V D++L+G
Subjt:  FGTPSFTNLLNQVTSIKLDKCNFLLWQNIVLPILRSYKLEGHLIEKTPPPEQSIIIPP----YEGETNGLLP---NLEYDIWLVADQILVG

XP_031745012.1 uncharacterized protein LOC116405217 [Cucumis sativus]9.2e-1141.49Show/hide
Query:  VRSGTMPFGTPSFTNLLNQVTSIKLDKCNFLLWQNIVLPILRSYKLEGHLIEKTPPPEQSIIIP---PYEGETNGLLPNLEYDIWLVADQILVG
        + S T  F  P    +LNQ+ S+KLD+ N+LLWQ + LPIL+SYKL+GHL E+   P + II P        T     N ++D W+  D +L+G
Subjt:  VRSGTMPFGTPSFTNLLNQVTSIKLDKCNFLLWQNIVLPILRSYKLEGHLIEKTPPPEQSIIIP---PYEGETNGLLPNLEYDIWLVADQILVG

TrEMBL top hitse value%identityAlignment
A0A5C7HHE9 Uncharacterized protein1.9e-0936.21Show/hide
Query:  SSSTKNDSDLKVSKETQLVPNRYQVRSGTMPFGTPSFTNLLNQVTSIKLDKCNFLLWQNIVLPILRSYKLEGHLIEKTPPPEQSIIIPPYEG-ETNGLLP
        S++++  S L  S  +   P   Q  S +    +P F N LNQ  +IKLD+ NF+LW+ +V  I++ ++L+GHL    P P + +  P   G   +G   
Subjt:  SSSTKNDSDLKVSKETQLVPNRYQVRSGTMPFGTPSFTNLLNQVTSIKLDKCNFLLWQNIVLPILRSYKLEGHLIEKTPPPEQSIIIPPYEG-ETNGLLP

Query:  NLEYDIWLVADQILVG
        N EY+ WLV DQ+L+G
Subjt:  NLEYDIWLVADQILVG

A0A5C7ID32 Uncharacterized protein9.3e-0933.87Show/hide
Query:  SSSTKNDSDLKVSKETQLVPNRYQVRSGTMPFGTPSFTNLLNQVTSIKLDKCNFLLWQNIVLPILRSYKLEGHLIEKTPPPEQSIIIPPYEG--------
        S++++  S L  S  +   P   Q  S +    +P F N LNQ  +IKLD+ NF+LW+ +V  I++ ++L+GHL    P P + +  P   G        
Subjt:  SSSTKNDSDLKVSKETQLVPNRYQVRSGTMPFGTPSFTNLLNQVTSIKLDKCNFLLWQNIVLPILRSYKLEGHLIEKTPPPEQSIIIPPYEG--------

Query:  -ETNGLLPNLEYDIWLVADQILVG
           +G   N EY+ WLV DQ+L+G
Subjt:  -ETNGLLPNLEYDIWLVADQILVG

A0A5C7IJ06 Uncharacterized protein9.3e-0933.87Show/hide
Query:  SSSTKNDSDLKVSKETQLVPNRYQVRSGTMPFGTPSFTNLLNQVTSIKLDKCNFLLWQNIVLPILRSYKLEGHLIEKTPPPEQSIIIPPYEG--------
        S++++  S L  S  +   P   Q  S +    +P F N LNQ  +IKLD+ NF+LW+ +V  I++ ++L+GHL    P P + +  P   G        
Subjt:  SSSTKNDSDLKVSKETQLVPNRYQVRSGTMPFGTPSFTNLLNQVTSIKLDKCNFLLWQNIVLPILRSYKLEGHLIEKTPPPEQSIIIPPYEG--------

Query:  -ETNGLLPNLEYDIWLVADQILVG
           +G   N EY+ WLV DQ+L+G
Subjt:  -ETNGLLPNLEYDIWLVADQILVG

A0A6J1DCW4 uncharacterized protein LOC1110195983.8e-1043.96Show/hide
Query:  FGTPSFTNLLNQVTSIKLDKCNFLLWQNIVLPILRSYKLEGHLIEKTPPPEQSIIIPP----YEGETNGLLP---NLEYDIWLVADQILVG
        F +P    LLNQ+TSIK+D+ NFLLWQN+ LPILRSYKL  +L    P P   ++        EG T+       N  Y+ W+V D++L+G
Subjt:  FGTPSFTNLLNQVTSIKLDKCNFLLWQNIVLPILRSYKLEGHLIEKTPPPEQSIIIPP----YEGETNGLLP---NLEYDIWLVADQILVG

A0A803NUC9 Uncharacterized protein1.6e-0842.16Show/hide
Query:  TQLVPNRYQVRSGTMPFGTPSFTNLLNQVTSIKLDKCNFLLWQNIVLPILRSYKLEGHLIEKTP-PPEQSIIIPPYEGET-NGLLPNLEYDIWLVADQIL
        T +VP      S T P   P F+N L+Q  S+KLD+ NF LW+ +V  I+R ++L+G +    P PPE      P EG T +G+  N EY+ WLV DQ+L
Subjt:  TQLVPNRYQVRSGTMPFGTPSFTNLLNQVTSIKLDKCNFLLWQNIVLPILRSYKLEGHLIEKTP-PPEQSIIIPPYEGET-NGLLPNLEYDIWLVADQIL

Query:  VG
        +G
Subjt:  VG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCAACCCGACCGAGTGAGACGACCATCTCACAAATTTGTTAATAGTCATGTACTAGAGCCAAATGGCCACGCTAGAAAGAACGATCTACCTGTGAATTCAATTAC
CCTCACACCCTCTTCATCCACCAAAAACGATTCTGATTTAAAAGTCAGCAAGGAAACTCAACTTGTTCCTAATAGGTATCAAGTGCGTTCTGGCACTATGCCCTTTGGAA
CCCCTTCCTTCACCAATCTTCTCAACCAGGTTACCTCTATCAAGCTTGACAAATGCAATTTTCTCTTATGGCAGAATATTGTCTTACCCATTCTAAGAAGCTACAAGTTG
GAAGGCCATCTTATCGAAAAAACTCCTCCTCCTGAACAATCAATTATTATTCCACCATATGAAGGTGAAACTAATGGTCTTCTTCCAAATCTCGAATATGACATTTGGCT
TGTTGCTGATCAGATCCTCGTGGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCCAACCCGACCGAGTGAGACGACCATCTCACAAATTTGTTAATAGTCATGTACTAGAGCCAAATGGCCACGCTAGAAAGAACGATCTACCTGTGAATTCAATTAC
CCTCACACCCTCTTCATCCACCAAAAACGATTCTGATTTAAAAGTCAGCAAGGAAACTCAACTTGTTCCTAATAGGTATCAAGTGCGTTCTGGCACTATGCCCTTTGGAA
CCCCTTCCTTCACCAATCTTCTCAACCAGGTTACCTCTATCAAGCTTGACAAATGCAATTTTCTCTTATGGCAGAATATTGTCTTACCCATTCTAAGAAGCTACAAGTTG
GAAGGCCATCTTATCGAAAAAACTCCTCCTCCTGAACAATCAATTATTATTCCACCATATGAAGGTGAAACTAATGGTCTTCTTCCAAATCTCGAATATGACATTTGGCT
TGTTGCTGATCAGATCCTCGTGGGCTAG
Protein sequenceShow/hide protein sequence
MFQPDRVRRPSHKFVNSHVLEPNGHARKNDLPVNSITLTPSSSTKNDSDLKVSKETQLVPNRYQVRSGTMPFGTPSFTNLLNQVTSIKLDKCNFLLWQNIVLPILRSYKL
EGHLIEKTPPPEQSIIIPPYEGETNGLLPNLEYDIWLVADQILVG