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ClCG04G012760 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG04G012760
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionTy3-gypsy retrotransposon protein
Genome locationCG_Chr04:27581912..27582265
RNA-Seq ExpressionClCG04G012760
SyntenyClCG04G012760
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038244.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.0e-1955.05Show/hide
Query:  MRTITLRGVATAGARREGSMKRLSDSQFHLREEKVLCFRCHEKNSMGHRCKVKDQRELRILLVHDNAEELEVFEDANETFGSVELQTATVEETTTKK-TV
        MRTITLR VAT   RREG  KRL+D++F  R+EK LCFRC EK   GHRCK KD +ELR+LLV +N EELE+ E   E F   E +    EE   +   +
Subjt:  MRTITLRGVATAGARREGSMKRLSDSQFHLREEKVLCFRCHEKNSMGHRCKVKDQRELRILLVHDNAEELEVFEDANETFGSVELQTATVEETTTKK-TV

Query:  ELPINYVVG
        EL IN VVG
Subjt:  ELPINYVVG

KAA0049630.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]9.0e-1955.05Show/hide
Query:  MRTITLRGVATAGARREGSMKRLSDSQFHLREEKVLCFRCHEKNSMGHRCKVKDQRELRILLVHDNAEELEVFEDANETFGSVELQTATVEETTTKK-TV
        MRTITLR VAT   RREG  KRL+D++F  R EK LCFRC EK   GHRCK KD +ELR+LLV +N EELE+ E   E F   E +    EE + +   +
Subjt:  MRTITLRGVATAGARREGSMKRLSDSQFHLREEKVLCFRCHEKNSMGHRCKVKDQRELRILLVHDNAEELEVFEDANETFGSVELQTATVEETTTKK-TV

Query:  ELPINYVVG
        EL IN VVG
Subjt:  ELPINYVVG

KAA0049776.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]9.0e-1955.05Show/hide
Query:  MRTITLRGVATAGARREGSMKRLSDSQFHLREEKVLCFRCHEKNSMGHRCKVKDQRELRILLVHDNAEELEVFEDANETFGSVELQTATVEETTTKK-TV
        MRTITLR VAT   RREG  KRL+D++F  R EK LCFRC EK   GHRCK KD +ELR+LLV +N EELE+ E   E F   E +    EE + +   +
Subjt:  MRTITLRGVATAGARREGSMKRLSDSQFHLREEKVLCFRCHEKNSMGHRCKVKDQRELRILLVHDNAEELEVFEDANETFGSVELQTATVEETTTKK-TV

Query:  ELPINYVVG
        EL IN VVG
Subjt:  ELPINYVVG

TYK15990.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]9.0e-1955.05Show/hide
Query:  MRTITLRGVATAGARREGSMKRLSDSQFHLREEKVLCFRCHEKNSMGHRCKVKDQRELRILLVHDNAEELEVFEDANETFGSVELQTATVEETTTKK-TV
        MRTITLR VAT   RREG  KRL+D++F  R EK LCFRC EK   GHRCK KD +ELR+LLV +N EELE+ E   E F   E +    EE + +   +
Subjt:  MRTITLRGVATAGARREGSMKRLSDSQFHLREEKVLCFRCHEKNSMGHRCKVKDQRELRILLVHDNAEELEVFEDANETFGSVELQTATVEETTTKK-TV

Query:  ELPINYVVG
        EL IN VVG
Subjt:  ELPINYVVG

TYK23090.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-1855.05Show/hide
Query:  MRTITLRGVATAGARREGSMKRLSDSQFHLREEKVLCFRCHEKNSMGHRCKVKDQRELRILLVHDNAEELEVFEDANETFGSVELQTATVEETTTKK-TV
        MRTITLR VAT   RREG  KRL+D++F  R EK LCFRC EK   GHRCK KD +ELR+LLV +N EELE+ E   E F   E +    EE + +   +
Subjt:  MRTITLRGVATAGARREGSMKRLSDSQFHLREEKVLCFRCHEKNSMGHRCKVKDQRELRILLVHDNAEELEVFEDANETFGSVELQTATVEETTTKK-TV

Query:  ELPINYVVG
        EL IN VVG
Subjt:  ELPINYVVG

TrEMBL top hitse value%identityAlignment
A0A5A7T449 Ty3-gypsy retrotransposon protein4.4e-1955.05Show/hide
Query:  MRTITLRGVATAGARREGSMKRLSDSQFHLREEKVLCFRCHEKNSMGHRCKVKDQRELRILLVHDNAEELEVFEDANETFGSVELQTATVEETTTKK-TV
        MRTITLR VAT   RREG  KRL+D++F  R+EK LCFRC EK   GHRCK KD +ELR+LLV +N EELE+ E   E F   E +    EE   +   +
Subjt:  MRTITLRGVATAGARREGSMKRLSDSQFHLREEKVLCFRCHEKNSMGHRCKVKDQRELRILLVHDNAEELEVFEDANETFGSVELQTATVEETTTKK-TV

Query:  ELPINYVVG
        EL IN VVG
Subjt:  ELPINYVVG

A0A5A7U2S1 Ty3/gypsy retrotransposon protein4.4e-1955.05Show/hide
Query:  MRTITLRGVATAGARREGSMKRLSDSQFHLREEKVLCFRCHEKNSMGHRCKVKDQRELRILLVHDNAEELEVFEDANETFGSVELQTATVEETTTKK-TV
        MRTITLR VAT   RREG  KRL+D++F  R EK LCFRC EK   GHRCK KD +ELR+LLV +N EELE+ E   E F   E +    EE + +   +
Subjt:  MRTITLRGVATAGARREGSMKRLSDSQFHLREEKVLCFRCHEKNSMGHRCKVKDQRELRILLVHDNAEELEVFEDANETFGSVELQTATVEETTTKK-TV

Query:  ELPINYVVG
        EL IN VVG
Subjt:  ELPINYVVG

A0A5A7U6J3 Ty3/gypsy retrotransposon protein4.4e-1955.05Show/hide
Query:  MRTITLRGVATAGARREGSMKRLSDSQFHLREEKVLCFRCHEKNSMGHRCKVKDQRELRILLVHDNAEELEVFEDANETFGSVELQTATVEETTTKK-TV
        MRTITLR VAT   RREG  KRL+D++F  R EK LCFRC EK   GHRCK KD +ELR+LLV +N EELE+ E   E F   E +    EE + +   +
Subjt:  MRTITLRGVATAGARREGSMKRLSDSQFHLREEKVLCFRCHEKNSMGHRCKVKDQRELRILLVHDNAEELEVFEDANETFGSVELQTATVEETTTKK-TV

Query:  ELPINYVVG
        EL IN VVG
Subjt:  ELPINYVVG

A0A5D3CXB1 Ty3/gypsy retrotransposon protein4.4e-1955.05Show/hide
Query:  MRTITLRGVATAGARREGSMKRLSDSQFHLREEKVLCFRCHEKNSMGHRCKVKDQRELRILLVHDNAEELEVFEDANETFGSVELQTATVEETTTKK-TV
        MRTITLR VAT   RREG  KRL+D++F  R EK LCFRC EK   GHRCK KD +ELR+LLV +N EELE+ E   E F   E +    EE + +   +
Subjt:  MRTITLRGVATAGARREGSMKRLSDSQFHLREEKVLCFRCHEKNSMGHRCKVKDQRELRILLVHDNAEELEVFEDANETFGSVELQTATVEETTTKK-TV

Query:  ELPINYVVG
        EL IN VVG
Subjt:  ELPINYVVG

A0A5D3DI73 Ty3/gypsy retrotransposon protein5.7e-1955.05Show/hide
Query:  MRTITLRGVATAGARREGSMKRLSDSQFHLREEKVLCFRCHEKNSMGHRCKVKDQRELRILLVHDNAEELEVFEDANETFGSVELQTATVEETTTKK-TV
        MRTITLR VAT   RREG  KRL+D++F  R EK LCFRC EK   GHRCK KD +ELR+LLV +N EELE+ E   E F   E +    EE + +   +
Subjt:  MRTITLRGVATAGARREGSMKRLSDSQFHLREEKVLCFRCHEKNSMGHRCKVKDQRELRILLVHDNAEELEVFEDANETFGSVELQTATVEETTTKK-TV

Query:  ELPINYVVG
        EL IN VVG
Subjt:  ELPINYVVG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTCCCTCAACCAAGTCTGATGAGAACAATTACTCTACGAGGAGTGGCAACGGCGGGAGCTAGACGCGAAGGTTCGATGAAGCGTCTCTCTGACTCCCAGTTTCA
TTTGCGTGAGGAAAAAGTCTTATGCTTTCGGTGTCATGAGAAGAATTCCATGGGGCATCGATGCAAGGTGAAGGACCAACGAGAATTGAGAATATTGTTGGTGCACGATA
ACGCTGAGGAATTGGAAGTGTTCGAAGACGCGAATGAGACATTTGGATCAGTAGAACTTCAAACGGCCACCGTAGAGGAGACTACGACGAAAAAGACTGTCGAATTGCCA
ATAAATTATGTGGTAGGGTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGTCCCTCAACCAAGTCTGATGAGAACAATTACTCTACGAGGAGTGGCAACGGCGGGAGCTAGACGCGAAGGTTCGATGAAGCGTCTCTCTGACTCCCAGTTTCA
TTTGCGTGAGGAAAAAGTCTTATGCTTTCGGTGTCATGAGAAGAATTCCATGGGGCATCGATGCAAGGTGAAGGACCAACGAGAATTGAGAATATTGTTGGTGCACGATA
ACGCTGAGGAATTGGAAGTGTTCGAAGACGCGAATGAGACATTTGGATCAGTAGAACTTCAAACGGCCACCGTAGAGGAGACTACGACGAAAAAGACTGTCGAATTGCCA
ATAAATTATGTGGTAGGGTTTTAG
Protein sequenceShow/hide protein sequence
MKVPQPSLMRTITLRGVATAGARREGSMKRLSDSQFHLREEKVLCFRCHEKNSMGHRCKVKDQRELRILLVHDNAEELEVFEDANETFGSVELQTATVEETTTKKTVELP
INYVVGF