; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG04G012830 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG04G012830
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionProtein-serine/threonine phosphatase
Genome locationCG_Chr04:27655311..27658775
RNA-Seq ExpressionClCG04G012830
SyntenyClCG04G012830
Gene Ontology termsGO:0006369 - termination of RNA polymerase II transcription (biological process)
GO:0006378 - mRNA polyadenylation (biological process)
GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain (biological process)
GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex (cellular component)
GO:0008420 - RNA polymerase II CTD heptapeptide repeat phosphatase activity (molecular function)
InterPro domainsIPR006811 - RNA polymerase II subunit A


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137380.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis sativus]3.8e-10089.2Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILP
        MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
        MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHA+MKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVI FEK
Subjt:  MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK

Query:  QQRRKLLYSISFY
        Q RRKLLYSISFY
Subjt:  QQRRKLLYSISFY

XP_008446784.1 PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucumis melo]5.9e-10190.14Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILP
        MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
        MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
Subjt:  MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK

Query:  QQRRKLLYSISFY
        Q RRKLLYSISFY
Subjt:  QQRRKLLYSISFY

XP_022948646.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita moschata]1.6e-9887.79Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILP
        MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
        MLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIEDLNTRDH LMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIER ESWED+IDDIVI FEK
Subjt:  MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK

Query:  QQRRKLLYSISFY
         QRRKLLYSISFY
Subjt:  QQRRKLLYSISFY

XP_022997876.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Cucurbita maxima]2.1e-9887.79Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILP
        MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
        MLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTF+LCQEIER ESWED+IDDIVI FEK
Subjt:  MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK

Query:  QQRRKLLYSISFY
         QRRKLLYSISFY
Subjt:  QQRRKLLYSISFY

XP_038895501.1 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 isoform X1 [Benincasa hispida]1.7e-10089.2Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILP
        MKYRYAMVCSSNQNRSMEAHSILK+KGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
        MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARL FDLCQE+ERTESWEDSIDDIVITFEK
Subjt:  MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK

Query:  QQRRKLLYSISFY
        QQRRKLLYSISFY
Subjt:  QQRRKLLYSISFY

TrEMBL top hitse value%identityAlignment
A0A1S3BFX9 Protein-serine/threonine phosphatase2.9e-10190.14Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILP
        MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
        MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
Subjt:  MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK

Query:  QQRRKLLYSISFY
        Q RRKLLYSISFY
Subjt:  QQRRKLLYSISFY

A0A6J1C6C8 Protein-serine/threonine phosphatase2.3e-9887.32Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILP
        MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
        MLKRNA VKTAPQRWQDNAADGSFDVVF+FEEKVFDMVIEDLNTRDH LMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWE +IDDIVI FEK
Subjt:  MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK

Query:  QQRRKLLYSISFY
        Q RRKLLYSISFY
Subjt:  QQRRKLLYSISFY

A0A6J1G9U0 Protein-serine/threonine phosphatase7.8e-9987.79Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILP
        MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
        MLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIEDLNTRDH LMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIER ESWED+IDDIVI FEK
Subjt:  MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK

Query:  QQRRKLLYSISFY
         QRRKLLYSISFY
Subjt:  QQRRKLLYSISFY

A0A6J1K8Q5 Protein-serine/threonine phosphatase1.0e-9887.79Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILP
        MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
        MLKRNAAVKTAPQRWQDNAADG FDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTF+LCQEIER ESWED+IDDIVI FEK
Subjt:  MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK

Query:  QQRRKLLYSISFY
         QRRKLLYSISFY
Subjt:  QQRRKLLYSISFY

A0A7N2MRF2 Protein-serine/threonine phosphatase6.4e-9380.75Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILP
        MK+RYAMVCSSNQNRSMEAHS+LK +GF+VSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMF+DLRRKDPEL                    YKRNGILP
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
        MLKRN++VK APQRWQ+NAADGSFDVVF FEEKVFDMV+EDL++RDHALMKTVL++NLEVKDNHEEAAIGARLT DLCQEIE  ESWEDSIDDI+ TFEK
Subjt:  MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK

Query:  QQRRKLLYSISFY
        QQRRKLLYSISFY
Subjt:  QQRRKLLYSISFY

SwissProt top hitse value%identityAlignment
Q17QI2 RNA polymerase II subunit A C-terminal domain phosphatase SSU724.2e-4948.1Show/hide
Query:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILPMLK
        R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD EL                    Y +NGIL ML 
Subjt:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILPMLK

Query:  RNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQR
        RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN+R+    + V ++N++++DNHEEA +GA L  +LCQ I+ TE  E+ ID+++  FE++  
Subjt:  RNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQR

Query:  RKLLYSISFY
        R  L+++ FY
Subjt:  RKLLYSISFY

Q4KLK9 RNA polymerase II subunit A C-terminal domain phosphatase SSU723.2e-4948.57Show/hide
Query:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILPMLK
        R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD EL                    Y +NGIL ML 
Subjt:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILPMLK

Query:  RNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQR
        RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN+R+    + V +VN++++DNHEEA +GA L  +LCQ I+ TE  E+ ID+++  FE++  
Subjt:  RNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQR

Query:  RKLLYSISFY
        R  L+++ FY
Subjt:  RKLLYSISFY

Q6PC19 RNA polymerase II subunit A C-terminal domain phosphatase SSU723.2e-4946.67Show/hide
Query:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILPMLK
        R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PN+YDF T Y+ M++DL RKD EL                    Y +NGIL ML 
Subjt:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILPMLK

Query:  RNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQR
        RN  +K+ P+R+Q  +    FD+V T EE+V+D V+EDLN+R+    + V ++N++++DNHEEA +GA L  +LCQ I+ T+  E+ +D+++  FE++  
Subjt:  RNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQR

Query:  RKLLYSISFY
        R  L+S+ FY
Subjt:  RKLLYSISFY

Q9CY97 RNA polymerase II subunit A C-terminal domain phosphatase SSU722.4e-4948.57Show/hide
Query:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILPMLK
        R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD EL                    Y +NGIL ML 
Subjt:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILPMLK

Query:  RNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQR
        RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN+R+    + V +VN++++DNHEEA +GA L  +LCQ I+ TE  E+ ID+++  FE++  
Subjt:  RNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQR

Query:  RKLLYSISFY
        R  L+++ FY
Subjt:  RKLLYSISFY

Q9NP77 RNA polymerase II subunit A C-terminal domain phosphatase SSU723.2e-4948.57Show/hide
Query:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILPMLK
        R A+VCSSNQNRSMEAH+IL  +GF+V S+GTG HVKLPGP+  +PNVYDF T Y  M++DL RKD EL                    Y +NGIL ML 
Subjt:  RYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILPMLK

Query:  RNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQR
        RN  +K  P+R+Q N  D  FD++ T EE+V+D V+EDLN+R+    + V +VN++++DNHEEA +GA L  +LCQ I+ TE  E+ ID+++  FE++  
Subjt:  RNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQR

Query:  RKLLYSISFY
        R  L+++ FY
Subjt:  RKLLYSISFY

Arabidopsis top hitse value%identityAlignment
AT1G73820.1 Ssu72-like family protein3.1e-8470.89Show/hide
Query:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILP
        M++RYAMVCSSNQNRSMEAH++LK +G +V+SYGTG+HVKLPGPSLREPNVYDFGTPYK MFD+LRRKDPEL                    YKRNGIL 
Subjt:  MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILP

Query:  MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK
        M+KRN +VK APQRWQDNA DG FDVV TFEEKVFD V+EDLN R+ +L KT+L++NLEVKDNHEEAAIG RL  +LCQEIE  E+WED+IDDIV  FEK
Subjt:  MLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEK

Query:  QQRRKLLYSISFY
        Q RRKL+YSISFY
Subjt:  QQRRKLLYSISFY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTATCGTTATGCGATGGTTTGCTCATCCAACCAGAATCGAAGCATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAACGTTTCATCCTATGGAACTGGGGC
TCACGTGAAGCTTCCCGGACCTTCTCTCCGGGAACCCAATGTATACGATTTTGGTACCCCCTACAAGCACATGTTCGATGATCTCCGTCGAAAAGATCCTGAACTGTATC
CTTTTTCTCCCCCTCTCTATCATTCCTCCCCCGAAAACGACCCGAAGACTGGTGGATACAAGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACG
GCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTCCTTTGATGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTCATTGAAGATTTGAACACCCGCGATCA
TGCACTGATGAAAACTGTACTGATTGTTAATTTGGAGGTAAAAGATAACCACGAGGAGGCAGCTATAGGAGCACGACTTACTTTTGATCTTTGCCAGGAGATTGAACGTA
CTGAATCATGGGAAGATTCTATAGATGACATCGTGATTACCTTCGAGAAACAACAGAGAAGAAAACTGCTGTATAGCATTTCCTTTTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGTATCGTTATGCGATGGTTTGCTCATCCAACCAGAATCGAAGCATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAACGTTTCATCCTATGGAACTGGGGC
TCACGTGAAGCTTCCCGGACCTTCTCTCCGGGAACCCAATGTATACGATTTTGGTACCCCCTACAAGCACATGTTCGATGATCTCCGTCGAAAAGATCCTGAACTGTATC
CTTTTTCTCCCCCTCTCTATCATTCCTCCCCCGAAAACGACCCGAAGACTGGTGGATACAAGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACG
GCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTCCTTTGATGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTCATTGAAGATTTGAACACCCGCGATCA
TGCACTGATGAAAACTGTACTGATTGTTAATTTGGAGGTAAAAGATAACCACGAGGAGGCAGCTATAGGAGCACGACTTACTTTTGATCTTTGCCAGGAGATTGAACGTA
CTGAATCATGGGAAGATTCTATAGATGACATCGTGATTACCTTCGAGAAACAACAGAGAAGAAAACTGCTGTATAGCATTTCCTTTTACTGAAGACAGTAAGATACTCTT
GTGTACATGGAATTTGCACATCGACTCTTCGCTATCCAAGTGTAATTTTATGAAAAAAAATTGAGTGAGCAAATCTTTTTAGTACTTTTTTATTAACACAACAAGGGATT
GAAGATTTGAACCTTCAACTTAAAGGAAAGAATACATGTTAATTACCACTTAGTTATATTCATGTTGATACTTCTCTTTTTGTTCTTTGAATCTGGGTTTGGTCAGCTGA
ATATTTG
Protein sequenceShow/hide protein sequence
MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYPFSPPLYHSSPENDPKTGGYKRNGILPMLKRNAAVKT
APQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQRRKLLYSISFY