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ClCG05G001046 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G001046
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionExosome complex component RRP41
Genome locationCG_Chr05:1166758..1170057
RNA-Seq ExpressionClCG05G001046
SyntenyClCG05G001046
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR027408 - PNPase/RNase PH domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAU03795.1 hypothetical protein VIGAN_UM182300 [Vigna angularis var. angularis]6.1e-0573.81Show/hide
Query:  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL
        G TRSA INAAT+ALA AGI M D VTSC+AGYLN+ SL+DL
Subjt:  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL

GFP91947.1 exosome complex component rrp41 [Phtheirospermum japonicum]2.1e-0537.23Show/hide
Query:  SAVFETIQVRFKSSSVNALYAPHSKCQELKSTNERSSTAYTFFLMLLCTVSRVLHHGGFQYGDRMRKPN---------FNLFF------------GTTRS
        SAVFE    +     + A+Y P       +  N+++        ++ C  S       F  GDRMRKP          F +F             G TRS
Subjt:  SAVFETIQVRFKSSSVNALYAPHSKCQELKSTNERSSTAYTFFLMLLCTVSRVLHHGGFQYGDRMRKPN---------FNLFF------------GTTRS

Query:  AYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL
        A INAAT+ALA AGI M D VTSC AGYLN   L+DL
Subjt:  AYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL

KAA3475217.1 exosome complex component RRP41 [Gossypium australe]4.7e-0550.62Show/hide
Query:  YTFF--LMLLCTVSRVLHHGGFQYGDRMRKPNFNLF--FGTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL
        YT F  L+ LC +S +L    F      RK N ++      TRSA INAAT+ALA AGI M D VTSC+AGYLN   L+DL
Subjt:  YTFF--LMLLCTVSRVLHHGGFQYGDRMRKPNFNLF--FGTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL

KAG9134069.1 hypothetical protein Leryth_004764 [Lithospermum erythrorhizon]6.1e-0573.81Show/hide
Query:  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL
        G TRSA INAAT+ALA AGI MSD VTSC+AGYLN+  L+DL
Subjt:  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL

XP_038684816.1 exosome complex component RRP41 homolog [Tripterygium wilfordii]6.1e-0573.81Show/hide
Query:  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL
        G TRSA INAAT+ALA AGI M D VTSC+AGYLN+ SL+DL
Subjt:  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL

TrEMBL top hitse value%identityAlignment
A0A0S3TEU4 Uncharacterized protein3.0e-0573.81Show/hide
Query:  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL
        G TRSA INAAT+ALA AGI M D VTSC+AGYLN+ SL+DL
Subjt:  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL

A0A0S3TFB2 Uncharacterized protein3.0e-0573.81Show/hide
Query:  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL
        G TRSA INAAT+ALA AGI M D VTSC+AGYLN+ SL+DL
Subjt:  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL

A0A0S3TFK5 Uncharacterized protein3.0e-0573.81Show/hide
Query:  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL
        G TRSA INAAT+ALA AGI M D VTSC+AGYLN+ SL+DL
Subjt:  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL

A0A6P9DYC4 exosome complex component RRP41 homolog3.0e-0571.43Show/hide
Query:  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL
        G TRSAYINAAT+ALA AGI + D VTSC+AGYLN   L+DL
Subjt:  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL

A0A7J7CD01 Exosome complex component RRP413.0e-0573.81Show/hide
Query:  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL
        G TRSA INAAT+ALA AGI M D VTSC+AGYLN+ SL+DL
Subjt:  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL

SwissProt top hitse value%identityAlignment
Q9SP08 Exosome complex component RRP41 homolog4.4e-0666.67Show/hide
Query:  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL
        G TRSA INAAT+ALA AGI M D   SC+AGYLN   L+DL
Subjt:  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL

Arabidopsis top hitse value%identityAlignment
AT3G61620.1 3'-5'-exoribonuclease family protein3.1e-0766.67Show/hide
Query:  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL
        G TRSA INAAT+ALA AGI M D   SC+AGYLN   L+DL
Subjt:  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL

AT3G61620.2 3'-5'-exoribonuclease family protein3.1e-0766.67Show/hide
Query:  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL
        G TRSA INAAT+ALA AGI M D   SC+AGYLN   L+DL
Subjt:  GTTRSAYINAATVALATAGISMSDNVTSCTAGYLNDASLVDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTAGTTCTGCTGTTTTTGAAACGATCCAAGTGAGGTTCAAGTCTTCATCTGTTAATGCATTGTATGCACCTCACTCAAAATGTCAAGAATTGAAGTCAACAAATGA
GCGATCAAGCACTGCTTATACTTTCTTCTTGATGCTCTTGTGCACTGTGAGTAGAGTACTACACCATGGTGGATTTCAGTATGGAGATCGCATGAGAAAACCTAATTTCA
ATCTGTTTTTCGGTACTACTAGATCGGCATACATCAATGCTGCAACTGTGGCTCTTGCAACTGCTGGAATTTCCATGAGTGATAATGTTACTTCCTGCACTGCTGGCTAT
CTCAATGACGCTTCTCTGGTCGATTTGAAGGATTATTGCTGGTGGCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTAGTTCTGCTGTTTTTGAAACGATCCAAGTGAGGTTCAAGTCTTCATCTGTTAATGCATTGTATGCACCTCACTCAAAATGTCAAGAATTGAAGTCAACAAATGA
GCGATCAAGCACTGCTTATACTTTCTTCTTGATGCTCTTGTGCACTGTGAGTAGAGTACTACACCATGGTGGATTTCAGTATGGAGATCGCATGAGAAAACCTAATTTCA
ATCTGTTTTTCGGTACTACTAGATCGGCATACATCAATGCTGCAACTGTGGCTCTTGCAACTGCTGGAATTTCCATGAGTGATAATGTTACTTCCTGCACTGCTGGCTAT
CTCAATGACGCTTCTCTGGTCGATTTGAAGGATTATTGCTGGTGGCCATGA
Protein sequenceShow/hide protein sequence
MFSSAVFETIQVRFKSSSVNALYAPHSKCQELKSTNERSSTAYTFFLMLLCTVSRVLHHGGFQYGDRMRKPNFNLFFGTTRSAYINAATVALATAGISMSDNVTSCTAGY
LNDASLVDLKDYCWWP