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ClCG05G001090 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G001090
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionarabinogalactan peptide 20-like
Genome locationCG_Chr05:1199248..1214191
RNA-Seq ExpressionClCG05G001090
SyntenyClCG05G001090
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147463.1 arabinogalactan peptide 20-like [Momordica charantia]4.4e-2788.89Show/hide
Query:  MASSNSTSRVFSGLFTFFALIFFILSPLVDA--AAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASS STSR FS LFT FALIFFI+SPLVDA  +APAPAPAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSTSRVFSGLFTFFALIFFILSPLVDA--AAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

XP_022924337.1 arabinogalactan peptide 16-like [Cucurbita moschata]1.0e-2889.16Show/hide
Query:  MASSNSTSRVFSGLFTFFALIFFILSPLVDA----AAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASSNSTSR FSGLFTFF LI FILSPLVDA     APAPAPAPASDGTSIDQG+AYVLMLVALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSTSRVFSGLFTFFALIFFILSPLVDA----AAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

XP_022979386.1 arabinogalactan peptide 20-like [Cucurbita maxima]1.7e-2684.34Show/hide
Query:  MASSNSTSRVFSGLFTFFALIFFILSPLVDA----AAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASSNST R FSGLFTFF LI FILSPL+DA     +PAPAPAPASDGTSIDQG+AYVLMLVALVLTYLIHPLDASS NFFLN
Subjt:  MASSNSTSRVFSGLFTFFALIFFILSPLVDA----AAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

XP_023528757.1 arabinogalactan peptide 16-like [Cucurbita pepo subsp. pepo]1.0e-2890.12Show/hide
Query:  MASSNSTSRVFSGLFTFFALIFFILSPLVDA--AAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASSNSTSR FSGLFTFF LI FILSPLVDA  + PAPAPAPASDGTSIDQG+AYVLMLVALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSTSRVFSGLFTFFALIFFILSPLVDA--AAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

XP_038905636.1 arabinogalactan protein 41-like [Benincasa hispida]2.8e-2994.94Show/hide
Query:  MASSNSTSRVFSGLFTFFALIFFILSPLVDAAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        M SSNSTSR FSGLFTFFALIFFILSPLVD AAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSY+FFLN
Subjt:  MASSNSTSRVFSGLFTFFALIFFILSPLVDAAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

TrEMBL top hitse value%identityAlignment
A0A0A0L7A0 Uncharacterized protein8.1e-2787.34Show/hide
Query:  MASSNSTSRVFSGLFTFFALIFFILSPLVDAAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        M S NSTSR F  LFTFF+LIFFILSPLVD A PAPAPAP+SDGTSIDQGIAYVLML+ALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSTSRVFSGLFTFFALIFFILSPLVDAAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

A0A6J1D1D7 arabinogalactan peptide 20-like2.1e-2788.89Show/hide
Query:  MASSNSTSRVFSGLFTFFALIFFILSPLVDA--AAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASS STSR FS LFT FALIFFI+SPLVDA  +APAPAPAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSTSRVFSGLFTFFALIFFILSPLVDA--AAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

A0A6J1E8M6 arabinogalactan peptide 16-like5.1e-2989.16Show/hide
Query:  MASSNSTSRVFSGLFTFFALIFFILSPLVDA----AAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASSNSTSR FSGLFTFF LI FILSPLVDA     APAPAPAPASDGTSIDQG+AYVLMLVALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSTSRVFSGLFTFFALIFFILSPLVDA----AAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

A0A6J1IAU1 arabinogalactan peptide 16-like4.1e-2381.25Show/hide
Query:  ASSNSTSRVFSGLFTFFALIFFILSPLVDA--AAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        +SS+ST   FSG FT FALIFFIL PLV A  +A APAPAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDASSY FFLN
Subjt:  ASSNSTSRVFSGLFTFFALIFFILSPLVDA--AAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

A0A6J1IQM6 arabinogalactan peptide 20-like8.1e-2784.34Show/hide
Query:  MASSNSTSRVFSGLFTFFALIFFILSPLVDA----AAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASSNST R FSGLFTFF LI FILSPL+DA     +PAPAPAPASDGTSIDQG+AYVLMLVALVLTYLIHPLDASS NFFLN
Subjt:  MASSNSTSRVFSGLFTFFALIFFILSPLVDA----AAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDASSYNFFLN

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 164.7e-1662.82Show/hide
Query:  MASSNSTSRVFSGLFTFFALIFFILSPLVDAAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA-SSYNFF
        MAS NS +      F  F+ +F ++  L  A + APAPAP SDGTSIDQGIAY+LM+VALVLTYLIHPLDA SSY+FF
Subjt:  MASSNSTSRVFSGLFTFFALIFFILSPLVDAAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA-SSYNFF

Q8L9T8 Arabinogalactan protein 412.6e-1469.35Show/hide
Query:  STSRVFSGLFTFFALIFFILSPLVDAAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH
        S SR+F G+ T  ++IF IL P+  A + APAPAP SDGT+IDQGIAYVLMLVALVLTYLIH
Subjt:  STSRVFSGLFTFFALIFFILSPLVDAAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH

Q9FK16 Arabinogalactan protein 228.6e-1061.11Show/hide
Query:  LFTFFALIFFILSPLVDAAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH
        +   F +I  IL P+  + + +PAPAP SDGTSIDQGIAYVLM+VAL LTY IH
Subjt:  LFTFFALIFFILSPLVDAAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH

Q9M373 Arabinogalactan protein 201.6e-1662.03Show/hide
Query:  MASSNSTSRVFSGLFTFFALIFFILSPLVDAAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA--SSYNFF
        MAS NS +     +   FA +F ++SP   A + APAP+P SDGTSIDQGIAY+LM+VALVLTYLIHPLDA  SSY FF
Subjt:  MASSNSTSRVFSGLFTFFALIFFILSPLVDAAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA--SSYNFF

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 163.4e-1762.82Show/hide
Query:  MASSNSTSRVFSGLFTFFALIFFILSPLVDAAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA-SSYNFF
        MAS NS +      F  F+ +F ++  L  A + APAPAP SDGTSIDQGIAY+LM+VALVLTYLIHPLDA SSY+FF
Subjt:  MASSNSTSRVFSGLFTFFALIFFILSPLVDAAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA-SSYNFF

AT3G61640.1 arabinogalactan protein 201.2e-1762.03Show/hide
Query:  MASSNSTSRVFSGLFTFFALIFFILSPLVDAAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA--SSYNFF
        MAS NS +     +   FA +F ++SP   A + APAP+P SDGTSIDQGIAY+LM+VALVLTYLIHPLDA  SSY FF
Subjt:  MASSNSTSRVFSGLFTFFALIFFILSPLVDAAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIHPLDA--SSYNFF

AT5G24105.1 arabinogalactan protein 411.8e-1569.35Show/hide
Query:  STSRVFSGLFTFFALIFFILSPLVDAAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH
        S SR+F G+ T  ++IF IL P+  A + APAPAP SDGT+IDQGIAYVLMLVALVLTYLIH
Subjt:  STSRVFSGLFTFFALIFFILSPLVDAAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH

AT5G53250.1 arabinogalactan protein 226.1e-1161.11Show/hide
Query:  LFTFFALIFFILSPLVDAAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH
        +   F +I  IL P+  + + +PAPAP SDGTSIDQGIAYVLM+VAL LTY IH
Subjt:  LFTFFALIFFILSPLVDAAAPAPAPAPASDGTSIDQGIAYVLMLVALVLTYLIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTGTCTTTTGTTTTTATGTTTTGGGACCGTTTGTGTGAGGAAGAGTGAGGCATGTGGCATTGGCATCATAGTTGAGAACAGCATTGTTCATCCTACCATCCACAT
GTGTTTGTTCCTTTGGAGAGGGAGACCACCATCAATGGCGTCCTCCAATTCTACTTCTAGGGTTTTCTCCGGCCTCTTCACCTTCTTCGCTCTCATCTTCTTCATTCTTT
CGCCACTCGTTGACGCCGCCGCCCCCGCTCCCGCTCCCGCTCCCGCTAGCGACGGCACCTCCATAGACCAGGGGATTGCGTACGTCCTGATGCTGGTGGCGTTGGTTCTC
ACGTACCTTATTCACCCTCTCGATGCATCTTCCTACAACTTTTTTCTGAATTGA
mRNA sequenceShow/hide mRNA sequence
GGAGGTCTTAATTTCAGAGAGTGTTTTTTAACCTAAAAAAAAAAAATTGATTCTCCGTTTCTGCCACTGCCGCAATCTTCCATCGTTTTCCTTTCCGCCTCCTCGTTCTC
CTTGCAGTAGTGGCCGCTCCGCGATCTGTGGCTTCTTTTGGAGGCGGCCCAATACAGCGCAGGCTTTAATTGAGGCCCAATTCACAGTTCAAGTGGAATTGAAAGCCCAA
TTACTTATACTAAGCCCAAGTTATCTATGGCGTAAGTTAGCATCGGTTGCTCTCAGCCGGTTAGAACAGAAGAACTTCAGCTTTAGCTTCCTTCCATTCCACTCTCATTT
TTACTCCAAATAGAAAACCATTCACTTTCCGAGTCCTTTCCTTTCCCTCTCTTTCTTCTTCCCATTCAAAAAGGGTTCCGCGCCATACCCGGATTCTTGATTACAGTATC
CTCTCTTCCGCCTACCTTCATTTCTCTCCTTTCCATCCTTCTGCTTAGCCCTAATTTCCCAAGGAATATGCCGAGAGAGATCATCACTCTGCAAGTTGGACAATGTGGGA
ACCAGATCGGAATGGAGTTCTGGAAGCAGCTCTGCCTCGAGCATGGAATCAGCAAAGAGGGCATTCTTGAAGATTTTGCTACTCAGGGAGGAGACCGGAAAGATGTATTC
TTCTATCAAGCTGATGATCAGCACTACATACCGAGAGCTTTGCTTATTGACCTGGAGCCCAGGGTCATCAATGGTATCCAGAACAGTGAATATCGAAATCTCTACAACCA
TGAGAACATCTTTGTTTCTGATCATGGAGGTGGTGCTGGAAATAACTGGGCCAGTGGATATCATCAGGTTTTCCTTTTAACAATATTTTTCCTTTTTAGTTTTGATATTC
TCATTAGAGAAACATGCCGATATTCTTTCTATGACCTAAAATTTGTACACAACAAAGTTATGTGCCATGCTTCTTAGAATTCTATGCTATCCATGTGGTATCTTTCTGAC
ATTGATTTGAAGACACGATCAGGGAAAAGGTGTTGAAGAGGATATCATGGATATGATTGACAGAGAAGCAGATGGAAGTGACAGCCTTGAGGGTTTTGTTCTATGCCACT
CAATTGCCGGAGGGACAGGATCAGGCATGGGTTCATATCTCCTGGAGACTCTGAATGATCGCTACAGCAAAAAACTGGTTCAGACGTACAGTGTTTTTCCTAATCAGATG
GAAACAAGTGATGTTGTAGTCCAACCTTACAACTCACTTTTGACTTTAAAGCGACTAACACTCAATGCTGATTGTGTTGTAGTTCTTGATAATACTGCCCTAAACAGAAT
AGCTGTAGAACGCCTTCATTTATCAAATCCAACCTTTGCACAAACAAACTCCTTAGTGTCTACAGTAATGTCAGCTAGCACAACCACTTTGAGATACCCAGGATATATGA
ACAATGACTTGGTTGGACTCCTGGCCTCTCTAATTCCAACACCAAGATGCCATTTTCTAATGACAGGATACACACCACTCACGGTTGAGCGCCAGGCCAATGTGATAAGG
AAAACCACTGTCCTTGACGTCATGAGAAGACTTCTGCAGACAAAAAATATTATGGTCTCCTCATATGCTCGAACAAAAGAAGCTAGTCAAGCGAAATACATATCAATATT
GAATATCATACAGGGAGAAGTGGACCCTACACAGGTTCACGAAAGCTTGCAGAGGATACGTGAAAGAAAGCTTGTGAATTTTATTGAGTGGGGCCCTGCCAGCATTCAGG
TTGCACTCTCACGGAAATCACCATATGTTCAAACTGCCCATAGGGTCAGTGGTCTTATGTTAGCTAGCCATACCAGCATCCGGCACCTTTTCAGCAAGTGTTTGAGCCAG
TATGAGAAGTTGAGAAAGAAGCAAGCCTTTCTTGACAACTATCGGAAGTTCCCAATGTTTGCTGACAATGACCTCTCTGAGTTTGATGAATCAAGGGATATAATCGAAAG
TTTGGTTGATGAATATAAGGCTTGTGAGTCGCCAGATTATATCAAATGGGGAATGGAGGATCCCGACCAGATTCTTACAGGTGATGGAAATGCATCAGGAACAGCAGACC
CAAGCTTGGCCGTCTGACAAGGCAAATAAGGTCATGTTAATGGAGGTTGTACCCGTGTGATTTTTTGTCTTCTATTTTTATTGAGTAAATATCCAATCTGAAAATACAGA
TACTCTCTGTATTCGTTCGTTAACCTAAGGGTCAGACTCCCACTATTCTAATCCATACGCAATCCATTTAGGTGTCTTCCATTTGCGTCAATGAGGTGTCTTTTGTTTTT
ATGTTTTGGGACCGTTTGTGTGAGGAAGAGTGAGGCATGTGGCATTGGCATCATAGTTGAGAACAGCATTGTTCATCCTACCATCCACATGTGTTTGTTCCTTTGGAGAG
GGAGACCACCATCAATGGCGTCCTCCAATTCTACTTCTAGGGTTTTCTCCGGCCTCTTCACCTTCTTCGCTCTCATCTTCTTCATTCTTTCGCCACTCGTTGACGCCGCC
GCCCCCGCTCCCGCTCCCGCTCCCGCTAGCGACGGCACCTCCATAGACCAGGGGATTGCGTACGTCCTGATGCTGGTGGCGTTGGTTCTCACGTACCTTATTCACCCTCT
CGATGCATCTTCCTACAACTTTTTTCTGAATTGAGTTCCTAGGACTGTAGCAATGTAGGCGCTGTTTGTGGGCGTTTGAGAAGGAACGAGGCCCAACTTTCTTTCTCTGT
TTTGTGATAAATGTGTATATTGGGTTTCGCAGATTTTGATCAATTGCTCCATTTATTCATTGTTTATTCGGTTGCTTTATTTTTGTCATAATTTATTCCATGGATGGATC
CATTTTGCAAAGCTTTTCAAGTCTG
Protein sequenceShow/hide protein sequence
MRCLLFLCFGTVCVRKSEACGIGIIVENSIVHPTIHMCLFLWRGRPPSMASSNSTSRVFSGLFTFFALIFFILSPLVDAAAPAPAPAPASDGTSIDQGIAYVLMLVALVL
TYLIHPLDASSYNFFLN