; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG05G001670 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G001670
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionPre-mRNA cleavage factor Im 25 kDa subunit
Genome locationCG_Chr05:1644177..1653074
RNA-Seq ExpressionClCG05G001670
SyntenyClCG05G001670
Gene Ontology termsGO:0006378 - mRNA polyadenylation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005849 - mRNA cleavage factor complex (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR016706 - Cleavage/polyadenylation specificity factor subunit 5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW75262.1 Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Vitis vinifera]1.1e-10271.84Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGC
        MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILL      W    Y + V+ S               L +        
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGC

Query:  LTFQILIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP
          F  L+   N                     +VQEH HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKL+SKL ANS +LQPDWQIGECVAIWWRP
Subjt:  LTFQILIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP

Query:  NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMIT
        NFET+MYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNM+T
Subjt:  NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMIT

RVW81206.1 Pre-mRNA cleavage factor Im 25 kDa subunit 2 [Vitis vinifera]8.2e-10371.84Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGC
        MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILL      W    Y + V+ S               L +        
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGC

Query:  LTFQILIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP
          F  L+   N                     +VQEH HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKL+SKL ANS +LQPDWQIGECVAIWWRP
Subjt:  LTFQILIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP

Query:  NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMIT
        NFET+MYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNM+T
Subjt:  NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMIT

XP_004133873.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis sativus]4.1e-10271.94Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGC
        MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILL                                             
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGC

Query:  LTFQILIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP
                                         VQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP
Subjt:  LTFQILIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP

Query:  NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
        NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT

XP_022147484.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Momordica charantia]9.1e-10271.58Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGC
        MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILL                                             
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGC

Query:  LTFQILIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP
                                         VQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+LQPDWQIGECVAIWWRP
Subjt:  LTFQILIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP

Query:  NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
        NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT

XP_031259563.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Pistacia vera]8.5e-10069.78Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGC
        MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILL                                             
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGC

Query:  LTFQILIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP
                                         VQEH HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSP+L PDWQIGECVAIWWRP
Subjt:  LTFQILIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP

Query:  NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
        NFET+MYPYCPPHITKPKECKKLF+VHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT

TrEMBL top hitse value%identityAlignment
A0A0A0L8Y2 Pre-mRNA cleavage factor Im 25 kDa subunit2.0e-10271.94Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGC
        MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILL                                             
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGC

Query:  LTFQILIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP
                                         VQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP
Subjt:  LTFQILIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP

Query:  NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
        NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT

A0A1S3AW26 Pre-mRNA cleavage factor Im 25 kDa subunit2.0e-10271.94Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGC
        MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILL                                             
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGC

Query:  LTFQILIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP
                                         VQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP
Subjt:  LTFQILIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP

Query:  NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
        NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT

A0A438GSV1 Pre-mRNA cleavage factor Im 25 kDa subunit5.2e-10371.84Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGC
        MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILL      W    Y + V+ S               L +        
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGC

Query:  LTFQILIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP
          F  L+   N                     +VQEH HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKL+SKL ANS +LQPDWQIGECVAIWWRP
Subjt:  LTFQILIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP

Query:  NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMIT
        NFET+MYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNM+T
Subjt:  NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMIT

A0A438H9K4 Pre-mRNA cleavage factor Im 25 kDa subunit4.0e-10371.84Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGC
        MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILL      W    Y + V+ S               L +        
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGC

Query:  LTFQILIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP
          F  L+   N                     +VQEH HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKL+SKL ANS +LQPDWQIGECVAIWWRP
Subjt:  LTFQILIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP

Query:  NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMIT
        NFET+MYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNM+T
Subjt:  NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMIT

A0A5D3D0Y8 Pre-mRNA cleavage factor Im 25 kDa subunit2.0e-10271.94Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGC
        MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILL                                             
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGC

Query:  LTFQILIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP
                                         VQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP
Subjt:  LTFQILIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP

Query:  NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
        NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT

SwissProt top hitse value%identityAlignment
O43809 Cleavage and polyadenylation specificity factor subunit 53.0e-5544.19Show/hide
Query:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGCLTFQIL
        +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+                                                   
Subjt:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGCLTFQIL

Query:  IRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFETVM
                                   V EH+ PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE   
Subjt:  IRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFETVM

Query:  YPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF
        YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++PQ LSRF F
Subjt:  YPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF

Q3ZCA2 Cleavage and polyadenylation specificity factor subunit 53.0e-5544.19Show/hide
Query:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGCLTFQIL
        +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+                                                   
Subjt:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGCLTFQIL

Query:  IRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFETVM
                                   V EH+ PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE   
Subjt:  IRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFETVM

Query:  YPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF
        YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++PQ LSRF F
Subjt:  YPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF

Q5RAI8 Cleavage and polyadenylation specificity factor subunit 53.0e-5544.19Show/hide
Query:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGCLTFQIL
        +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+                                                   
Subjt:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGCLTFQIL

Query:  IRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFETVM
                                   V EH+ PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE   
Subjt:  IRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFETVM

Query:  YPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF
        YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++PQ LSRF F
Subjt:  YPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF

Q8GXS3 Pre-mRNA cleavage factor Im 25 kDa subunit 23.6e-9363.31Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGC
        M  S VVNTYPLS+Y+FGTKEPKLEKDTSVADRLARMK+NYMKEGMRTSVE ILL                                             
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGC

Query:  LTFQILIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP
                                         VQEH HPHILLLQIGNTFCKLPGGRLKPGENE +GLKRKLTSKLG NS +L PDW +GECVA WWRP
Subjt:  LTFQILIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP

Query:  NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
        NFET+MYPYCPPHITKPKECK+L+IVHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRF FNMI++
Subjt:  NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT

Q9CQF3 Cleavage and polyadenylation specificity factor subunit 53.0e-5544.19Show/hide
Query:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGCLTFQIL
        +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+                                                   
Subjt:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGCLTFQIL

Query:  IRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFETVM
                                   V EH+ PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE   
Subjt:  IRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFETVM

Query:  YPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF
        YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++PQ LSRF F
Subjt:  YPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF

Arabidopsis top hitse value%identityAlignment
AT4G25550.1 Cleavage/polyadenylation specificity factor, 25kDa subunit2.6e-9463.31Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGC
        M  S VVNTYPLS+Y+FGTKEPKLEKDTSVADRLARMK+NYMKEGMRTSVE ILL                                             
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGC

Query:  LTFQILIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP
                                         VQEH HPHILLLQIGNTFCKLPGGRLKPGENE +GLKRKLTSKLG NS +L PDW +GECVA WWRP
Subjt:  LTFQILIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRP

Query:  NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
        NFET+MYPYCPPHITKPKECK+L+IVHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRF FNMI++
Subjt:  NFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT

AT4G29820.1 homolog of CFIM-259.8e-5440.96Show/hide
Query:  VVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGCLTFQI
        +V+ YPLSSY FG+KE    KD  ++DR+ R+K NY   G+RT VEA+LL                                                  
Subjt:  VVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGCLTFQI

Query:  LIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFETV
                                    V+  KHPH+LLLQ  N+  KLPGGRL+PGE++IEGLKRKL SKL  N       +++GEC+ +WWRPNFET+
Subjt:  LIRKMNHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFETV

Query:  MYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMI
        MYP+ PP+I  PKEC KLF+V L   + F VPKN KLLAVPL +L++N + YGP++S IP+ LS+F FNM+
Subjt:  MYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGACGTCGCCGGTGGTGAACACCTATCCACTTTCCAGCTACACCTTCGGTACCAAAGAGCCGAAGCTCGAGAAGGACACCTCCGTCGCTGATCGTCTTGCTCGCAT
GAAAGTCAACTATATGAAGGAAGGCATGAGGACAAGTGTTGAAGCAATTCTGCTGTTAAAGCAAGCATTAATGTGGATCATTTGCTGCTATCTCAGTCGTGTTTCAGGCT
CTTGTTGGCAAGGATGGAGAATCACTGGGACTTTCATTCCTTGTGAGCTAGAAATATGGGCTCAATCAGGGAGGGGCTGCCTAACCTTTCAAATTTTGATAAGAAAAATG
AACCATGTTGATGACTCTAAAGGAGTCCAGAAACAGGAGGATAAGGAATTCAATCCTAAAGCTAAAGAGGTGCAAGAACATAAACATCCCCATATTCTACTTTTGCAAAT
AGGCAATACCTTTTGCAAGCTCCCTGGGGGACGGTTGAAGCCAGGAGAAAATGAAATTGAAGGTTTAAAGAGGAAGCTCACGAGCAAACTGGGTGCAAATTCACCGTCTC
TCCAGCCTGATTGGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTTGAAACTGTTATGTATCCTTATTGCCCCCCTCATATTACGAAACCCAAGGAATGC
AAAAAGCTTTTCATTGTTCACTTGTCTGAAAGAGAGTACTTCGCCGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAGCTCTATGACAATGTGCAGAGATA
TGGACCAGTTATATCGACAATCCCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGA
mRNA sequenceShow/hide mRNA sequence
TCTCACTCGTTAAAAAGACATTTATACCAATTAACCTGCGAAACTTGCAAGGACTGATCGCAGGTCATCACCAAGGTTTTTCAACTTCCTTCCGGCTTTGCTCGGCAGCT
GCAGAGTGAACACAGCCATGGTGACGTCGCCGGTGGTGAACACCTATCCACTTTCCAGCTACACCTTCGGTACCAAAGAGCCGAAGCTCGAGAAGGACACCTCCGTCGCT
GATCGTCTTGCTCGCATGAAAGTCAACTATATGAAGGAAGGCATGAGGACAAGTGTTGAAGCAATTCTGCTGTTAAAGCAAGCATTAATGTGGATCATTTGCTGCTATCT
CAGTCGTGTTTCAGGCTCTTGTTGGCAAGGATGGAGAATCACTGGGACTTTCATTCCTTGTGAGCTAGAAATATGGGCTCAATCAGGGAGGGGCTGCCTAACCTTTCAAA
TTTTGATAAGAAAAATGAACCATGTTGATGACTCTAAAGGAGTCCAGAAACAGGAGGATAAGGAATTCAATCCTAAAGCTAAAGAGGTGCAAGAACATAAACATCCCCAT
ATTCTACTTTTGCAAATAGGCAATACCTTTTGCAAGCTCCCTGGGGGACGGTTGAAGCCAGGAGAAAATGAAATTGAAGGTTTAAAGAGGAAGCTCACGAGCAAACTGGG
TGCAAATTCACCGTCTCTCCAGCCTGATTGGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTTGAAACTGTTATGTATCCTTATTGCCCCCCTCATATTA
CGAAACCCAAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCTGAAAGAGAGTACTTCGCCGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAGCTCTAT
GACAATGTGCAGAGATATGGACCAGTTATATCGACAATCCCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGAGGTTGCAAATCAAGAACCCTTAAAAT
TTGTAGCAGGCGTGGTCTCCAATTTGCTTGAGATAGTTAGAACTCAGAGGACATTATCAACCTTGCTTGAGATAGATTAGCATACTTAATTGACTTTCTTGTTCTCGACC
TTTTTGTCAATGTGTTTGCAAGGCAAATCCCGAGGAAAAAAAATATATGTTGCTTCAAACTAGAGCGGAAAATGAAAAATCGACTGAGTTTGTGTAACAATTTAACTTGA
TGAAAGTTTTAAGAGTGTAATGTACGTCTATTGAATCAATTATTAAAGTGGTTAATTTGTGGAAATTAGACATTTTTGGTTCC
Protein sequenceShow/hide protein sequence
MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLLKQALMWIICCYLSRVSGSCWQGWRITGTFIPCELEIWAQSGRGCLTFQILIRKM
NHVDDSKGVQKQEDKEFNPKAKEVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKEC
KKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT