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ClCG05G002470 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G002470
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionSWIB domain-containing protein
Genome locationCG_Chr05:2343653..2345532
RNA-Seq ExpressionClCG05G002470
SyntenyClCG05G002470
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004133931.1 upstream activation factor subunit spp27 [Cucumis sativus]2.1e-6387.97Show/hide
Query:  MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSK--PKTE-PRVKTPPSSDAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEAS
        MSSGF NGIRVFRACRALLAPSKSSATVP A A KSKTTSK  PK + P+VKTPPSS AAGVAATP+PKIK+EM+RP+GILKVTQVSPALSNFLGVSEAS
Subjt:  MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSK--PKTE-PRVKTPPSSDAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEAS

Query:  RTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        R+DAV QIWSYIKLHNLQNP NKREIYCDDKLKAIFEGREKVGFLEIGK LARHFVKN
Subjt:  RTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

XP_008438197.1 PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo]5.1e-6285.99Show/hide
Query:  MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTE-PRVKTPPSS-DAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASR
        MSSGF NG+RVFRACR LLAPSKSSATVP A A KSKTT+KPKT+ P+VKTPPSS  AAGVAATP+PKIK+  +RP+GILKVTQVSPALSNFLGVSEASR
Subjt:  MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTE-PRVKTPPSS-DAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASR

Query:  TDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        TDAV QIWSYIKLHNLQNP NKREIYCDDKLKAIFEGREKV FLEIGK+LARHFVKN
Subjt:  TDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

XP_022146901.1 upstream activation factor subunit spp27-like [Momordica charantia]1.1e-6488.39Show/hide
Query:  MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTD
        MSSG +NGIRVFR CRALLAPSKSSA+VPAAAAAKSK T KPK+E + KT PSSD A  AA PKPKIKREMTRPAGILKV QVSPAL NFLGV EASRTD
Subjt:  MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTD

Query:  AVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        AVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
Subjt:  AVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

XP_022980440.1 protein TRI1-like [Cucurbita maxima]5.1e-6285.81Show/hide
Query:  MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTD
        MSSGF+NGIRVFR CRALLAPSKSSATVP  AA KS+TTSK  TEP+ KTPP SD A  AA PKPK+KREMTR  G LKV QVSPAL NFLGVSEASRTD
Subjt:  MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTD

Query:  AVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        AVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Subjt:  AVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

XP_038877222.1 upstream activation factor subunit UAF30 [Benincasa hispida]3.4e-6689.68Show/hide
Query:  MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTD
        MSSGF+NGIRVFRACRALLAPSKSSATV AA AAKS TTSKPK + +VKTPP+SD A V+ATPKPKIKRE+TRP GILKVTQVSPALSNFLGVSEASR D
Subjt:  MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTD

Query:  AVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        AVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLA HFVKN
Subjt:  AVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

TrEMBL top hitse value%identityAlignment
A0A0A0L3V0 SWIB domain-containing protein1.0e-6387.97Show/hide
Query:  MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSK--PKTE-PRVKTPPSSDAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEAS
        MSSGF NGIRVFRACRALLAPSKSSATVP A A KSKTTSK  PK + P+VKTPPSS AAGVAATP+PKIK+EM+RP+GILKVTQVSPALSNFLGVSEAS
Subjt:  MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSK--PKTE-PRVKTPPSSDAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEAS

Query:  RTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        R+DAV QIWSYIKLHNLQNP NKREIYCDDKLKAIFEGREKVGFLEIGK LARHFVKN
Subjt:  RTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

A0A1S3AVG6 upstream activation factor subunit UAF30-like2.5e-6285.99Show/hide
Query:  MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTE-PRVKTPPSS-DAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASR
        MSSGF NG+RVFRACR LLAPSKSSATVP A A KSKTT+KPKT+ P+VKTPPSS  AAGVAATP+PKIK+  +RP+GILKVTQVSPALSNFLGVSEASR
Subjt:  MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTE-PRVKTPPSS-DAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASR

Query:  TDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        TDAV QIWSYIKLHNLQNP NKREIYCDDKLKAIFEGREKV FLEIGK+LARHFVKN
Subjt:  TDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

A0A6J1D0R8 upstream activation factor subunit spp27-like5.3e-6588.39Show/hide
Query:  MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTD
        MSSG +NGIRVFR CRALLAPSKSSA+VPAAAAAKSK T KPK+E + KT PSSD A  AA PKPKIKREMTRPAGILKV QVSPAL NFLGV EASRTD
Subjt:  MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTD

Query:  AVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        AVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
Subjt:  AVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

A0A6J1EDA2 upstream activation factor subunit spp27-like4.4e-5981.94Show/hide
Query:  MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTD
        MSSGF+NGIRVFR C +LLAP KSSATVP   A KSKT SK   EP+ KTPP SD A  AA PKPK +REMTRP G+LKV QVSPAL NFLGVSEASRTD
Subjt:  MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTD

Query:  AVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        AVKQIWSYIKLHNLQNP+NKREIYCDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Subjt:  AVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

A0A6J1IWB1 protein TRI1-like2.5e-6285.81Show/hide
Query:  MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTD
        MSSGF+NGIRVFR CRALLAPSKSSATVP  AA KS+TTSK  TEP+ KTPP SD A  AA PKPK+KREMTR  G LKV QVSPAL NFLGVSEASRTD
Subjt:  MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTD

Query:  AVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        AVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Subjt:  AVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp271.5e-1153.57Show/hide
Query:  KVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFE
        K  ++SP L+ FLG+ + SR   VK++W YIK H+LQ+P +KR I CDDKLK++FE
Subjt:  KVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFE

Q05024 Protein TRI12.3e-0933.33Show/hide
Query:  PAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDK
        P  +  K K  S+ K++ + K   S D+  ++                 ++   +S  L  FLG  E  RT  VK IW YIK H+LQNP ++REI CD+K
Subjt:  PAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDK

Query:  LKAIFEGREKVGFLEIGKLLARH
        ++ IF   +K+    + KLL +H
Subjt:  LKAIFEGREKVGFLEIGKLLARH

Q08747 Upstream activation factor subunit UAF305.1e-1244.44Show/hide
Query:  PAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVK
        P    KVT +S +L++ LG  E +RT+ V+++W+YIK HNLQNP NK+EI CD+KL+ I    +     E+ K+LA H  +
Subjt:  PAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVK

Q2TBN1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 12.7e-0534.33Show/hide
Query:  QVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLL
        ++ P L+  LG+   +R   ++ +W YIK H LQ+P  +  + CD  L+ IFE  +++ F EI + L
Subjt:  QVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLL

Q9P7S3 SWI/SNF and RSC complexes subunit ssr31.3e-0740.58Show/hide
Query:  QVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLAR
        ++S A +N LG+ E +R D V  +W YIK H LQ+   KR I CD  L+ +FE  +++ F  I +L+ R
Subjt:  QVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLAR

Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein8.5e-2358.75Show/hide
Query:  GILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        GI K   VS  L++F G  E +R  A+K++W Y+KLHNLQNPANK+EI+CDDKLK IF+G++KVG  EI KLL+ HF K+
Subjt:  GILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

AT2G14880.1 SWIB/MDM2 domain superfamily protein1.0e-2044.26Show/hide
Query:  KTTSKPKTEPRVKTPPSSDAAGVAATPKPKIKREMTR-----PAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKA
        +  S P +  R  + P++    V A        E T      P GI+K   VSP + + + + E +RT A+K+IW+YIK H+LQ+P NKREI CD+KLK 
Subjt:  KTTSKPKTEPRVKTPPSSDAAGVAATPKPKIKREMTR-----PAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKA

Query:  IFEGREKVGFLEIGKLLARHFV
        IFEGR++VGFLEI KL+  HF+
Subjt:  IFEGREKVGFLEIGKLLARHFV

AT2G35605.1 SWIB/MDM2 domain superfamily protein2.4e-2558.59Show/hide
Query:  AGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
        A  A++   K  R+ T   GILKV  VS  L+NF+G +E SRT AVK+IW YIKL+NLQNP NKREI CD++LK IF G++ VGFLEI KLL++HF K+
Subjt:  AGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

AT3G03590.1 SWIB/MDM2 domain superfamily protein7.7e-3250.69Show/hide
Query:  VFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIK
        VFR  R+LLAP+  + +   +A +  K  +KPK + + K    SD+            ++  R  GI KVT VSP L+ FLG  E SRTDA+K IW+YIK
Subjt:  VFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIK

Query:  LHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVK
         H+LQNPA+KREI+CD+ LK IFEG++KVGFLEI KLL+ HFVK
Subjt:  LHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVK

AT4G34290.1 SWIB/MDM2 domain superfamily protein2.2e-2351.55Show/hide
Query:  AGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFV
        +  AA+  P    +   P GI+K   VS A+ + +GV E  RT A+K+IW+YIK H+LQ+P NKR+I CD+KLK IFEG+E+VGFLEI KL+  HF+
Subjt:  AGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCTGGATTCACCAATGGCATTAGGGTTTTCAGAGCCTGCAGAGCTCTCTTAGCTCCGTCCAAATCCTCTGCTACCGTTCCCGCCGCCGCCGCCGCCAAATCAAA
GACGACCTCGAAGCCGAAGACGGAGCCCAGGGTTAAGACTCCTCCGAGCTCCGATGCTGCTGGTGTTGCAGCCACGCCCAAGCCGAAAATCAAAAGGGAAATGACTCGAC
CGGCGGGGATTCTGAAGGTCACCCAGGTTTCTCCTGCGTTGAGCAACTTCTTGGGTGTATCGGAGGCTTCTCGCACTGACGCCGTCAAGCAGATCTGGTCCTACATCAAG
CTCCATAACCTTCAGAATCCTGCTAACAAAAGAGAGATCTACTGCGACGATAAACTTAAAGCCATATTTGAAGGAAGGGAAAAGGTCGGTTTCTTAGAGATCGGAAAATT
GCTCGCTCGCCATTTTGTGAAGAACTGA
mRNA sequenceShow/hide mRNA sequence
CTGCCCCTTCGTTTTCGGCGAGTTTCTCTCTGGTTCTTCTCCTCACTGAACCCTCCGCCGGAAACCGACTGCGACAGCCGAGCGACCTACAATGTCGTCTGGATTCACCA
ATGGCATTAGGGTTTTCAGAGCCTGCAGAGCTCTCTTAGCTCCGTCCAAATCCTCTGCTACCGTTCCCGCCGCCGCCGCCGCCAAATCAAAGACGACCTCGAAGCCGAAG
ACGGAGCCCAGGGTTAAGACTCCTCCGAGCTCCGATGCTGCTGGTGTTGCAGCCACGCCCAAGCCGAAAATCAAAAGGGAAATGACTCGACCGGCGGGGATTCTGAAGGT
CACCCAGGTTTCTCCTGCGTTGAGCAACTTCTTGGGTGTATCGGAGGCTTCTCGCACTGACGCCGTCAAGCAGATCTGGTCCTACATCAAGCTCCATAACCTTCAGAATC
CTGCTAACAAAAGAGAGATCTACTGCGACGATAAACTTAAAGCCATATTTGAAGGAAGGGAAAAGGTCGGTTTCTTAGAGATCGGAAAATTGCTCGCTCGCCATTTTGTG
AAGAACTGATGCAGGTGATGAGAGATCAACTTCCAATCCTATTCTGACTTACCTTCCCATCCCATTCATTTTGGTTGTTGATAGTCTTGTTTGGCTCATGTTTTTTTAGT
CAATATGGATGAACTTCTTCCACATATTGCATTTTAAGATTTTACCCCAATG
Protein sequenceShow/hide protein sequence
MSSGFTNGIRVFRACRALLAPSKSSATVPAAAAAKSKTTSKPKTEPRVKTPPSSDAAGVAATPKPKIKREMTRPAGILKVTQVSPALSNFLGVSEASRTDAVKQIWSYIK
LHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN