; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG05G004580 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G004580
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionAlba domain-containing protein
Genome locationCG_Chr05:4344316..4345691
RNA-Seq ExpressionClCG05G004580
SyntenyClCG05G004580
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002775 - DNA/RNA-binding protein Alba-like
IPR014560 - Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related
IPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134424.1 uncharacterized protein At2g34160 [Cucumis sativus]1.9e-5886.58Show/hide
Query:  MDSGMVVSDGTPKVKNEIHNEEEKLLVLAQDGEVKEIAVLTEF-KKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        MDSGMVVS+  P+VKNEI NEEE+LLV A D EVKEIAVLTEF KKRNQIQVSNVKKPFFYYYNLSKR IKQYNEVELSALGMAIPTVVTIAEILK+NGL
Subjt:  MDSGMVVSDGTPKVKNEIHNEEEKLLVLAQDGEVKEIAVLTEF-KKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  AFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNVEKIKKISTAPTSEES
        AFQK L ISSVSLKNGE+ KLVMKPKIEI LVN EKIK ISTAPTSE+S
Subjt:  AFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNVEKIKKISTAPTSEES

XP_008438573.1 PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo]4.6e-6088.59Show/hide
Query:  MDSGMVVSDGTPKVKNEIHNEEEKLLVLAQDGEVKEIAVLTEF-KKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        MDSG VVS+ TP+VKNEI NEEEKLLV A D EVKEIAVLTEF KKRNQIQVSNVKKPFFYYYNLSKR IKQYNEVELSALGMAIPTVVTIAEILK+NGL
Subjt:  MDSGMVVSDGTPKVKNEIHNEEEKLLVLAQDGEVKEIAVLTEF-KKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  AFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNVEKIKKISTAPTSEES
        AFQKNLTISSVSLKNGE+ KLVMKPKIEI LVN EKIK ISTAPTSE+S
Subjt:  AFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNVEKIKKISTAPTSEES

XP_022924600.1 uncharacterized protein At2g34160-like [Cucurbita moschata]1.6e-5785.23Show/hide
Query:  MDSGMVVSDGTPKVKNEIHNEEEKLLVLAQDGEVKEIAVLTEF-KKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        M+SGMVVS+   ++KNEI NEEEKLLV+A DGEVKEIAVLTE  KKRNQIQVSNVKKPFFYYYNLSKR IKQYNEVELSALGMAIPTVVTIAEILKKNGL
Subjt:  MDSGMVVSDGTPKVKNEIHNEEEKLLVLAQDGEVKEIAVLTEF-KKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  AFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNVEKIKKISTAPTSEES
        AFQK LTISSVSLKNGE+D+LVMKPKIEI L+N EK+KKISTA TSE+S
Subjt:  AFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNVEKIKKISTAPTSEES

XP_022980835.1 uncharacterized protein At2g34160-like [Cucurbita maxima]1.6e-5785.91Show/hide
Query:  MDSGMVVSDGTPKVKNEIHNEEEKLLVLAQDGEVKEIAVLTEF-KKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        M+SGMVVS+ T +VKNEI NEEEKLLV+A D EVKEIAVLTE  KKRNQIQVSNVKKPFFYYYNLSKR IKQYNEVELSALGMAIPTVVTIAEILKKNGL
Subjt:  MDSGMVVSDGTPKVKNEIHNEEEKLLVLAQDGEVKEIAVLTEF-KKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  AFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNVEKIKKISTAPTSEES
        AFQK LTISSVSLKNGE+D+LVMKPKIEI L+N EK+KKISTA TSE+S
Subjt:  AFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNVEKIKKISTAPTSEES

XP_038877187.1 uncharacterized protein At2g34160-like [Benincasa hispida]7.1e-6188.59Show/hide
Query:  MDSGMVVSDGTPKVKNEIHNEEEKLLVLAQDGEVKEIAVLTEF-KKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        M+SGMVVS+GTP+VKNEI +EEEKLLV+A DGEVKEIAVLTEF KKRNQIQVSNVKKPFFYYYNLSKR IKQYNEVELSALGMAIPTVVTIAEILK+NGL
Subjt:  MDSGMVVSDGTPKVKNEIHNEEEKLLVLAQDGEVKEIAVLTEF-KKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  AFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNVEKIKKISTAPTSEES
        AFQK LTISSVSLK GE+DKLVMKPKIEI LVN EKIK ISTAPTSE+S
Subjt:  AFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNVEKIKKISTAPTSEES

TrEMBL top hitse value%identityAlignment
A0A0A0L8F8 Alba domain-containing protein9.3e-5986.58Show/hide
Query:  MDSGMVVSDGTPKVKNEIHNEEEKLLVLAQDGEVKEIAVLTEF-KKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        MDSGMVVS+  P+VKNEI NEEE+LLV A D EVKEIAVLTEF KKRNQIQVSNVKKPFFYYYNLSKR IKQYNEVELSALGMAIPTVVTIAEILK+NGL
Subjt:  MDSGMVVSDGTPKVKNEIHNEEEKLLVLAQDGEVKEIAVLTEF-KKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  AFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNVEKIKKISTAPTSEES
        AFQK L ISSVSLKNGE+ KLVMKPKIEI LVN EKIK ISTAPTSE+S
Subjt:  AFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNVEKIKKISTAPTSEES

A0A1S3AXD3 uncharacterized protein At2g34160-like2.2e-6088.59Show/hide
Query:  MDSGMVVSDGTPKVKNEIHNEEEKLLVLAQDGEVKEIAVLTEF-KKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        MDSG VVS+ TP+VKNEI NEEEKLLV A D EVKEIAVLTEF KKRNQIQVSNVKKPFFYYYNLSKR IKQYNEVELSALGMAIPTVVTIAEILK+NGL
Subjt:  MDSGMVVSDGTPKVKNEIHNEEEKLLVLAQDGEVKEIAVLTEF-KKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  AFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNVEKIKKISTAPTSEES
        AFQKNLTISSVSLKNGE+ KLVMKPKIEI LVN EKIK ISTAPTSE+S
Subjt:  AFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNVEKIKKISTAPTSEES

A0A5D3CZ81 Alba DNA/RNA-binding protein2.2e-6088.59Show/hide
Query:  MDSGMVVSDGTPKVKNEIHNEEEKLLVLAQDGEVKEIAVLTEF-KKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        MDSG VVS+ TP+VKNEI NEEEKLLV A D EVKEIAVLTEF KKRNQIQVSNVKKPFFYYYNLSKR IKQYNEVELSALGMAIPTVVTIAEILK+NGL
Subjt:  MDSGMVVSDGTPKVKNEIHNEEEKLLVLAQDGEVKEIAVLTEF-KKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  AFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNVEKIKKISTAPTSEES
        AFQKNLTISSVSLKNGE+ KLVMKPKIEI LVN EKIK ISTAPTSE+S
Subjt:  AFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNVEKIKKISTAPTSEES

A0A6J1EFH1 uncharacterized protein At2g34160-like7.9e-5885.23Show/hide
Query:  MDSGMVVSDGTPKVKNEIHNEEEKLLVLAQDGEVKEIAVLTEF-KKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        M+SGMVVS+   ++KNEI NEEEKLLV+A DGEVKEIAVLTE  KKRNQIQVSNVKKPFFYYYNLSKR IKQYNEVELSALGMAIPTVVTIAEILKKNGL
Subjt:  MDSGMVVSDGTPKVKNEIHNEEEKLLVLAQDGEVKEIAVLTEF-KKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  AFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNVEKIKKISTAPTSEES
        AFQK LTISSVSLKNGE+D+LVMKPKIEI L+N EK+KKISTA TSE+S
Subjt:  AFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNVEKIKKISTAPTSEES

A0A6J1IXN8 uncharacterized protein At2g34160-like7.9e-5885.91Show/hide
Query:  MDSGMVVSDGTPKVKNEIHNEEEKLLVLAQDGEVKEIAVLTEF-KKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        M+SGMVVS+ T +VKNEI NEEEKLLV+A D EVKEIAVLTE  KKRNQIQVSNVKKPFFYYYNLSKR IKQYNEVELSALGMAIPTVVTIAEILKKNGL
Subjt:  MDSGMVVSDGTPKVKNEIHNEEEKLLVLAQDGEVKEIAVLTEF-KKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  AFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNVEKIKKISTAPTSEES
        AFQK LTISSVSLKNGE+D+LVMKPKIEI L+N EK+KKISTA TSE+S
Subjt:  AFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNVEKIKKISTAPTSEES

SwissProt top hitse value%identityAlignment
O22969 Uncharacterized protein At2g341604.7e-2350.88Show/hide
Query:  VKEIAVLTEFKKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNV
        V  + + T+ +K+N+IQVSN KKP F+Y NL+KR ++QYN+VELSALGMAI TVVT+ EILK NG A +K +  S+V +K+    + V K KIEI LV  
Subjt:  VKEIAVLTEFKKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNV

Query:  EKIKKISTAPTSEE
        EK  ++  A   E+
Subjt:  EKIKKISTAPTSEE

Arabidopsis top hitse value%identityAlignment
AT1G29250.1 Alba DNA/RNA-binding protein4.8e-2349.12Show/hide
Query:  VKEIAVLTEFKKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNV
        V  + +  + +K+N+IQVSN KKP F+Y NL+KR ++QY +VELSALGMAI TVVT+AEILK NG A +K +  S+V +K+    + V K KIEI L   
Subjt:  VKEIAVLTEFKKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNV

Query:  EKIKKISTAPTSEE
        EK  ++  A   E+
Subjt:  EKIKKISTAPTSEE

AT2G34160.1 Alba DNA/RNA-binding protein3.3e-2450.88Show/hide
Query:  VKEIAVLTEFKKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNV
        V  + + T+ +K+N+IQVSN KKP F+Y NL+KR ++QYN+VELSALGMAI TVVT+ EILK NG A +K +  S+V +K+    + V K KIEI LV  
Subjt:  VKEIAVLTEFKKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNV

Query:  EKIKKISTAPTSEE
        EK  ++  A   E+
Subjt:  EKIKKISTAPTSEE

AT3G04620.1 Alba DNA/RNA-binding protein1.6e-2355.45Show/hide
Query:  EFKKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNVEK----IK
        E  K+N+IQVSN KKP F+Y NL+KR I+Q+NEVELSALGMAI TVVTI+EILK NGLA +K +  S+V +K+    K+V K KIEIVL   +K    + 
Subjt:  EFKKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKNLTISSVSLKNGESDKLVMKPKIEIVLVNVEK----IK

Query:  KISTAPTSEE
         ++   T EE
Subjt:  KISTAPTSEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCCGGCATGGTCGTCTCAGACGGCACCCCTAAGGTCAAGAATGAAATCCACAATGAAGAGGAAAAGCTTCTCGTCCTTGCCCAAGATGGTGAGGTTAAGGAGAT
TGCTGTTTTGACCGAATTCAAGAAGAGGAATCAAATTCAGGTTTCCAATGTCAAGAAGCCATTCTTTTACTACTACAATCTTTCTAAGAGGCAGATTAAGCAGTACAATG
AAGTTGAGCTTTCTGCATTAGGAATGGCTATACCTACTGTGGTGACGATCGCCGAGATTCTGAAGAAGAATGGATTGGCATTTCAAAAGAACTTGACGATATCTTCTGTC
AGTTTGAAGAATGGGGAAAGTGACAAGCTTGTTATGAAACCTAAGATTGAGATTGTACTGGTAAATGTAGAAAAGATCAAGAAAATTTCGACTGCTCCAACAAGTGAAGA
ATCTTAA
mRNA sequenceShow/hide mRNA sequence
TTCATTTCTTGAGGGGCGGAGCAGTCACCGGGAAATGCAGTAACTGCCGGTGTACGGCTGTTAAACGAAACCGTTGAGACCTTAACCGCTCAAACGACTCCGTCGCAACA
AACACTGCCGCCGCCAGTTCCGATTCTTCGCCTTCAAAATTCTTTATAAATTACTACTGCAGTTCGATTCCATTTTACCAAAGTTCACAATTAGTAGTAGAATCTTTTGA
TTCCTTCTGCGCACTACTTTTTTAGCGACGCAGGAAGAGATCAGGCAATGGATTCCGGCATGGTCGTCTCAGACGGCACCCCTAAGGTCAAGAATGAAATCCACAATGAA
GAGGAAAAGCTTCTCGTCCTTGCCCAAGATGGTGAGGTTAAGGAGATTGCTGTTTTGACCGAATTCAAGAAGAGGAATCAAATTCAGGTTTCCAATGTCAAGAAGCCATT
CTTTTACTACTACAATCTTTCTAAGAGGCAGATTAAGCAGTACAATGAAGTTGAGCTTTCTGCATTAGGAATGGCTATACCTACTGTGGTGACGATCGCCGAGATTCTGA
AGAAGAATGGATTGGCATTTCAAAAGAACTTGACGATATCTTCTGTCAGTTTGAAGAATGGGGAAAGTGACAAGCTTGTTATGAAACCTAAGATTGAGATTGTACTGGTA
AATGTAGAAAAGATCAAGAAAATTTCGACTGCTCCAACAAGTGAAGAATCTTAATACAAGTTTTGTTAGTAGTGTAGTACCATTCTCGGATCTGGCTTTGCTTCTTGTTT
GCCTATTTTGTCCAGAGTTTCTATAAGAGATTAGAGATTTGCTAGGGAATAGGCGAGTTGCAGATCTTTTAGTCGAATGAGATTCAATCCTGATAGAACCTAAGGAGAAG
AGCTCCTCTTTTTTTTCTCACAACGAGGTTCTTAAGAATTGGATGTAGGAGAAGCTTTCTTTGTAATTGAACTACCAACTTCTAATTGCATACGAAATT
Protein sequenceShow/hide protein sequence
MDSGMVVSDGTPKVKNEIHNEEEKLLVLAQDGEVKEIAVLTEFKKRNQIQVSNVKKPFFYYYNLSKRQIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKNLTISSV
SLKNGESDKLVMKPKIEIVLVNVEKIKKISTAPTSEES