CuGenDBv2

Gene ID	ClCG05G004990
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	protein RDM1-like
Genome location	CG_Chr05:4833052..4835015
RNA-Seq Expression	ClCG05G004990
Synteny	ClCG05G004990
Gene Ontology terms	GO:0044030 - regulation of DNA methylation (biological process) GO:0000419 - RNA polymerase V complex (cellular component)
InterPro domains	IPR015270 - Protein RDM1, plant IPR036319 - RDM1 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6582316.1 Protein RDM1, partial [Cucurbita argyrosperma subsp. sororia]

4.4e-94

98.28

Show/hide

Query:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSETGVQND FEFKPS+DDFKIPAKEMT+EGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

XP_022955802.1 protein RDM1 [Cucurbita moschata]

4.4e-94

98.28

Show/hide

Query:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSETGVQND FEFKPS+DDFKIPAKEMT+EGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

XP_022979547.1 protein RDM1-like [Cucurbita maxima]

2.6e-94

98.85

Show/hide

Query:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSETGVQND FEFKPSLDDFKIPAKEMT+EGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

XP_023527197.1 protein RDM1 [Cucurbita pepo subsp. pepo]

2.2e-93

97.7

Show/hide

Query:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSETGVQND FEFKPS+DDFKIPAKEMT+EG LIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

XP_038877941.1 protein RDM1 [Benincasa hispida]

1.1e-94

99.43

Show/hide

Query:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSETGVQND FEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L8M0 Uncharacterized protein

2.9e-91

94.25

Show/hide

Query:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVD+ISSGESSSSDSE  +QND +EFKPSLDDFKIPAKEMTSEGML+KRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLR GS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

A0A1S3AWI8 protein RDM1

7.5e-92

95.98

Show/hide

Query:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE  VQND +EFKPSLDDFKIPAKEMTSEGML+KRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLR GS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

A0A5D3D0B3 Protein RDM1

1.3e-91

95.4

Show/hide

Query:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE  VQND +EFKPSLDDFKIPAKEMTSEGML+KRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        Y+TNILLKQWDQLR GS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

A0A6J1GV10 protein RDM1

2.1e-94

98.28

Show/hide

Query:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSETGVQND FEFKPS+DDFKIPAKEMT+EGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

A0A6J1INZ9 protein RDM1-like

1.2e-94

98.85

Show/hide

Query:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSETGVQND FEFKPSLDDFKIPAKEMT+EGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

SwissProt top hits

e value

%identity

Alignment

Q9LUJ3 Protein RDM1

1.4e-47

55.7

Show/hide

Query:  SGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRF
        SG+S SSD +        E            +++  EG L++RAEMYQ+YMKQ+ IP  RGS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ RF
Subjt:  SGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRF

Query:  GSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ
        G+  E + LD++IHP+KAEAT+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Subjt:  GSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G22680.1 RNA-DIRECTED DNA METHYLATION 1

1.0e-48

55.7

Show/hide

Query:  SGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRF
        SG+S SSD +        E            +++  EG L++RAEMYQ+YMKQ+ IP  RGS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ RF
Subjt:  SGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRF

Query:  GSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ
        G+  E + LD++IHP+KAEAT+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Subjt:  GSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAGAGGCCAATGCCCTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCGGAAACAGGAGTACAAAATGATGTATTTGAGTTC
AAGCCTTCCCTGGACGATTTCAAAATTCCTGCCAAAGAAATGACATCTGAAGGTATGTTGATTAAAAGGGCGGAAATGTATCAAGAATACATGAAACAGATCCAG
ATCCCAGCACAACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGAAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATT
CTACTCAAACAGTGGGATCAATTAAGGTTCGGAAGTGTGGATGAATATAAGCCATTGGATACTGTAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTT
GAAGAGATTCATAGGCGTACCTCATCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCAATGCACGAAGCGTATGTTGACTCCATTTTCCCCCAACTATGA

mRNA sequence

Show/hide mRNA sequence

CTCAAAACTGGTCTCTCCATCAAAGTTCGAGCTTGTTGAATTACTGAGCTCTACTGGCTTTCCGTCCCGAAACCCACATCGGAGAACAGCTTCAGCTTTACGATT
CGACGCGCTCTCTTTCTTTTCGAAATACTAAGAATTACATAATTTACGAAATGAAGAGGCCAATGCCCTGGAATGAACAAGTAGATGTTATATCATCAGGTGAAT
CTTCTTCCTCTGATTCGGAAACAGGAGTACAAAATGATGTATTTGAGTTCAAGCCTTCCCTGGACGATTTCAAAATTCCTGCCAAAGAAATGACATCTGAAGGTA
TGTTGATTAAAAGGGCGGAAATGTATCAAGAATACATGAAACAGATCCAGATCCCAGCACAACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGAA
AATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATTCTACTCAAACAGTGGGATCAATTAAGGTTCGGAAGTGTGGATGAATATAAGCCAT
TGGATACTGTAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGTACCTCATCACATCATCATGTTGCTAAACTCTGGTTAT
CAGACCCAATGCACGAAGCGTATGTTGACTCCATTTTCCCCCAACTATGAAGGCTGCTTTCAGTTATGTTCTGCGCTGTGTTGATATACTATAACATATTTCTAG
AAGGCTAACATGTCAGTGACAATGTGAATTGTAATAGAAACAGCATAGTTCTTTTGGCACATTCAACTTTAATGTGTAGGTTTCTTATAAACTGACAGGGAAGAA
GCTCCAGCATTGCTTCTTCTGTCATTGTTGCCATTTGTCTGTTCACTAGTTGACTGCATTTACTTTTGTAGCAAAGAACGAATGTAAATCAATATCGAAAATGCA
TATTTTATCATA

Protein sequence

Show/hide protein sequence

MKRPMPWNEQVDVISSGESSSSDSETGVQNDVFEFKPSLDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNI
LLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL

ClCG05G004990 (gene) of Watermelon (Charleston Gray) v2.5 genome