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ClCG05G005330 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G005330
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description3-dehydrosphinganine reductase TSC10A-like
Genome locationCG_Chr05:5210362..5212036
RNA-Seq ExpressionClCG05G005330
SyntenyClCG05G005330
Gene Ontology termsGO:0006666 - 3-keto-sphinganine metabolic process (biological process)
GO:0030148 - sphingolipid biosynthetic process (biological process)
GO:0005789 - endoplasmic reticulum membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0047560 - 3-dehydrosphinganine reductase activity (molecular function)
InterPro domainsIPR002347 - Short-chain dehydrogenase/reductase SDR
IPR020904 - Short-chain dehydrogenase/reductase, conserved site
IPR036291 - NAD(P)-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134147.1 3-dehydrosphinganine reductase TSC10A [Cucumis sativus]4.7e-4385.84Show/hide
Query:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTT
        MLDVNLLGTFNMIKAALPAMK RVD RPA IAL      +VGIYGYTAYS SKFGIRGLAEALQQEVI DDIH+SLIFPPDTDTPGFAEEQKKR ELTT 
Subjt:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTT

Query:  IAAGGGSMKPENV
        IAAGGGSMKPE V
Subjt:  IAAGGGSMKPENV

XP_008438707.1 PREDICTED: 3-dehydrosphinganine reductase TSC10A isoform X2 [Cucumis melo]3.6e-4386.73Show/hide
Query:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTT
        MLDVNLLGTFNMIKAALPAMK RVD RPA IAL      +VGIYGYTAYS SKFGIRGLAEALQQEVI DDIHISLIFPPDTDTPGFAEEQKKR ELTT 
Subjt:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTT

Query:  IAAGGGSMKPENV
        IAAGGGSMKPE V
Subjt:  IAAGGGSMKPENV

XP_016899126.1 PREDICTED: 3-dehydrosphinganine reductase TSC10A isoform X1 [Cucumis melo]3.6e-4386.73Show/hide
Query:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTT
        MLDVNLLGTFNMIKAALPAMK RVD RPA IAL      +VGIYGYTAYS SKFGIRGLAEALQQEVI DDIHISLIFPPDTDTPGFAEEQKKR ELTT 
Subjt:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTT

Query:  IAAGGGSMKPENV
        IAAGGGSMKPE V
Subjt:  IAAGGGSMKPENV

XP_038892507.1 3-dehydrosphinganine reductase TSC10A-like isoform X1 [Benincasa hispida]3.6e-4386.73Show/hide
Query:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTT
        MLDVNLLGTFNMIKAALPAMK RVD RPA IAL      +VGIYGYTAYS SKFGIRGLAEALQQEVI DDIHISLIFPPDTDTPGFAEEQKKR ELTT 
Subjt:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTT

Query:  IAAGGGSMKPENV
        IAAGGGSMKPE V
Subjt:  IAAGGGSMKPENV

XP_038892516.1 3-dehydrosphinganine reductase TSC10A-like isoform X2 [Benincasa hispida]3.6e-4386.73Show/hide
Query:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTT
        MLDVNLLGTFNMIKAALPAMK RVD RPA IAL      +VGIYGYTAYS SKFGIRGLAEALQQEVI DDIHISLIFPPDTDTPGFAEEQKKR ELTT 
Subjt:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTT

Query:  IAAGGGSMKPENV
        IAAGGGSMKPE V
Subjt:  IAAGGGSMKPENV

TrEMBL top hitse value%identityAlignment
A0A0A0L506 Uncharacterized protein2.3e-4385.84Show/hide
Query:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTT
        MLDVNLLGTFNMIKAALPAMK RVD RPA IAL      +VGIYGYTAYS SKFGIRGLAEALQQEVI DDIH+SLIFPPDTDTPGFAEEQKKR ELTT 
Subjt:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTT

Query:  IAAGGGSMKPENV
        IAAGGGSMKPE V
Subjt:  IAAGGGSMKPENV

A0A1S3AX60 3-dehydrosphinganine reductase TSC10A isoform X21.8e-4386.73Show/hide
Query:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTT
        MLDVNLLGTFNMIKAALPAMK RVD RPA IAL      +VGIYGYTAYS SKFGIRGLAEALQQEVI DDIHISLIFPPDTDTPGFAEEQKKR ELTT 
Subjt:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTT

Query:  IAAGGGSMKPENV
        IAAGGGSMKPE V
Subjt:  IAAGGGSMKPENV

A0A1S4DT08 3-dehydrosphinganine reductase TSC10A isoform X11.8e-4386.73Show/hide
Query:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTT
        MLDVNLLGTFNMIKAALPAMK RVD RPA IAL      +VGIYGYTAYS SKFGIRGLAEALQQEVI DDIHISLIFPPDTDTPGFAEEQKKR ELTT 
Subjt:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTT

Query:  IAAGGGSMKPENV
        IAAGGGSMKPE V
Subjt:  IAAGGGSMKPENV

A0A5D3D2X9 3-dehydrosphinganine reductase TSC10A isoform X21.8e-4386.73Show/hide
Query:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTT
        MLDVNLLGTFNMIKAALPAMK RVD RPA IAL      +VGIYGYTAYS SKFGIRGLAEALQQEVI DDIHISLIFPPDTDTPGFAEEQKKR ELTT 
Subjt:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTT

Query:  IAAGGGSMKPENV
        IAAGGGSMKPE V
Subjt:  IAAGGGSMKPENV

A0A6J1C8X1 3-dehydrosphinganine reductase TSC10A-like1.2e-3979.65Show/hide
Query:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTT
        MLDVNL+GTFNMIKAALPAMK RVD RPA IAL      +VGIYGYTAYS SKFG+RGLAEALQQEVI DDIHIS+IFPPDTDTPG AEE K+R ELT+ 
Subjt:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTT

Query:  IAAGGGSMKPENV
        IAAGGGSMK E V
Subjt:  IAAGGGSMKPENV

SwissProt top hitse value%identityAlignment
F4JZN6 3-dehydrosphinganine reductase TSC10B6.5e-3559.71Show/hide
Query:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTT
        M+DVNL G+FN+IKAALPAMK R    PA I+L      + GIYGYTAYS SKFG++GLA+ALQQEVI D IH++L+FPPDTDTPGF +E KKR ELT+ 
Subjt:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTT

Query:  IAAGGGSMKPENVEDL------AGYFSVV-SFIVWLLAI
        IAA  GSMK   V  +      AG F+V   FI +LL+I
Subjt:  IAAGGGSMKPENVEDL------AGYFSVV-SFIVWLLAI

Q06136 3-ketodihydrosphingosine reductase1.6e-1743.64Show/hide
Query:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALI---ALKVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTTIAA
        ++ +N LG+    +A +  MK+R   R   +   A ++G++G+TAYS SKF IRGLAEALQ EV   +++I++ +PPDTDTPGFAEE + +   T  I+ 
Subjt:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALI---ALKVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTTIAA

Query:  GGGSMKPENV
             KPE V
Subjt:  GGGSMKPENV

Q0WRJ2 3-dehydrosphinganine reductase TSC10A6.5e-3566.07Show/hide
Query:  LDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTTI
        +DVNL+G+FN+IKAALPAMK R D  PA I+L      +VG+YGY AYS SKFG++GLA+ALQQEVI DDIH++LIFPPDT+TPGF EEQK R E+T  I
Subjt:  LDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTTI

Query:  AAGGGSMKPENV
        AA  GSM+ E V
Subjt:  AAGGGSMKPENV

Q2KIJ5 3-ketodihydrosphingosine reductase1.6e-1739.84Show/hide
Query:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALI---ALKVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTTIAA
        ++ +N LG+    +A +  MK+R   R   +   A ++G++GYTAYS+SKF +RGLAEALQ EV   ++++++ +PPDTDTPGFA+E + +   T  I+ 
Subjt:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALI---ALKVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTTIAA

Query:  GGGSMKPEN-----VEDLAGYFS
             KPE      V+D+ G F+
Subjt:  GGGSMKPEN-----VEDLAGYFS

Q6GV12 3-ketodihydrosphingosine reductase3.6e-1742.73Show/hide
Query:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALI---ALKVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTTIAA
        ++ +N LG+    +A +  MK+R   R   +   A ++G++G+TAYS+SKF IRGLAEALQ EV   ++++++ +PPDTDTPG AEE K +   T  I+ 
Subjt:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALI---ALKVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTTIAA

Query:  GGGSMKPENV
             KPE V
Subjt:  GGGSMKPENV

Arabidopsis top hitse value%identityAlignment
AT3G06060.1 NAD(P)-binding Rossmann-fold superfamily protein4.6e-3666.07Show/hide
Query:  LDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTTI
        +DVNL+G+FN+IKAALPAMK R D  PA I+L      +VG+YGY AYS SKFG++GLA+ALQQEVI DDIH++LIFPPDT+TPGF EEQK R E+T  I
Subjt:  LDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTTI

Query:  AAGGGSMKPENV
        AA  GSM+ E V
Subjt:  AAGGGSMKPENV

AT5G19200.1 NAD(P)-binding Rossmann-fold superfamily protein4.6e-3659.71Show/hide
Query:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTT
        M+DVNL G+FN+IKAALPAMK R    PA I+L      + GIYGYTAYS SKFG++GLA+ALQQEVI D IH++L+FPPDTDTPGF +E KKR ELT+ 
Subjt:  MLDVNLLGTFNMIKAALPAMKKRVDPRPALIAL------KVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTT

Query:  IAAGGGSMKPENVEDL------AGYFSVV-SFIVWLLAI
        IAA  GSMK   V  +      AG F+V   FI +LL+I
Subjt:  IAAGGGSMKPENVEDL------AGYFSVV-SFIVWLLAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGATGTGAATTTATTGGGCACATTCAACATGATTAAGGCTGCCCTACCTGCGATGAAGAAAAGAGTGGACCCTCGACCCGCATTGATCGCTCTCAAGGTGGGTAT
TTATGGTTACACGGCGTATTCAACTAGTAAATTTGGGATTCGAGGTTTGGCAGAAGCCTTGCAACAGGAGGTCATTAGAGATGACATACATATTTCTCTTATATTTCCTC
CAGACACTGACACTCCTGGATTTGCAGAAGAGCAAAAGAAAAGGCTTGAATTGACCACTACCATTGCTGCTGGAGGAGGCAGTATGAAACCCGAGAACGTAGAAGATTTG
GCTGGTTATTTCTCGGTAGTTTCTTTCATTGTATGGCTATTAGCTATTGAAATTCTCAACTCTGGATTCCACAATAACTGGAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTAGATGTGAATTTATTGGGCACATTCAACATGATTAAGGCTGCCCTACCTGCGATGAAGAAAAGAGTGGACCCTCGACCCGCATTGATCGCTCTCAAGGTGGGTAT
TTATGGTTACACGGCGTATTCAACTAGTAAATTTGGGATTCGAGGTTTGGCAGAAGCCTTGCAACAGGAGGTCATTAGAGATGACATACATATTTCTCTTATATTTCCTC
CAGACACTGACACTCCTGGATTTGCAGAAGAGCAAAAGAAAAGGCTTGAATTGACCACTACCATTGCTGCTGGAGGAGGCAGTATGAAACCCGAGAACGTAGAAGATTTG
GCTGGTTATTTCTCGGTAGTTTCTTTCATTGTATGGCTATTAGCTATTGAAATTCTCAACTCTGGATTCCACAATAACTGGAAGTAG
Protein sequenceShow/hide protein sequence
MLDVNLLGTFNMIKAALPAMKKRVDPRPALIALKVGIYGYTAYSTSKFGIRGLAEALQQEVIRDDIHISLIFPPDTDTPGFAEEQKKRLELTTTIAAGGGSMKPENVEDL
AGYFSVVSFIVWLLAIEILNSGFHNNWK