; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG05G006090 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G006090
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptiontranscription elongation factor B polypeptide 3
Genome locationCG_Chr05:6051278..6051988
RNA-Seq ExpressionClCG05G006090
SyntenyClCG05G006090
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0070449 - elongin complex (cellular component)
GO:0035529 - NADH pyrophosphatase activity (molecular function)
GO:0047631 - ADP-ribose diphosphatase activity (molecular function)
GO:0051287 - NAD binding (molecular function)
InterPro domainsIPR010684 - RNA polymerase II transcription factor SIII, subunit A


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582092.1 hypothetical protein SDJN03_22094, partial [Cucurbita argyrosperma subsp. sororia]1.0e-5357.99Show/hide
Query:  INEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARK
        +N+AIDSL+FLGDVG+ DLN L+RILPHCT+ QLM IEN SKGRDLTPVT+KLWK FYE+KFGK+  + V+E MKH KESFKWKQ+YE K++E E+KA +
Subjt:  INEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARK

Query:  IEARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGTTKPRHNTKPTKIWKKAKREA
        IE RYIQNC+ EKA+K+SRQ+  C  S                      SK+LKK K   +IC+VSS NNNK+    GGT         +KI KKA++E 
Subjt:  IEARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGTTKPRHNTKPTKIWKKAKREA

Query:  LQCIETKNLIAFRRNAMQK
        LQ IETKN IAFRRNA+QK
Subjt:  LQCIETKNLIAFRRNAMQK

KAG6582214.1 hypothetical protein SDJN03_22216, partial [Cucurbita argyrosperma subsp. sororia]2.1e-5457.99Show/hide
Query:  INEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARK
        +N+AIDSL+FLGDVG  DLN L+ ILPHCT++QLMHIEN SKGRDLTPVT+KLWK FYEKKFG++  + V+ERMKH KESF+WKQ+YE KM+E E+KA +
Subjt:  INEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARK

Query:  IEARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGTTKPRHNTKPTKIWKKAKREA
        IE RYIQNC+ EK +K+SRQ+  C  S                      SK+LKK K + +IC+VSS  NNK+  S+GG T        +KI KKA++E 
Subjt:  IEARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGTTKPRHNTKPTKIWKKAKREA

Query:  LQCIETKNLIAFRRNAMQK
         Q IETKNLIAFRRNA+QK
Subjt:  LQCIETKNLIAFRRNAMQK

XP_022979571.1 uncharacterized protein LOC111479252 [Cucurbita maxima]3.2e-5557.08Show/hide
Query:  INEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARK
        +N+AIDSL+FLGDVG  DLN L+ ILPHCT++QLMHIEN SKGRDLTP+T+KLWK FYE+KFGK+D + V++RMKH KESF+WKQ+YE K++E E KA +
Subjt:  INEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARK

Query:  IEARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGTTKPRHNTKPTKIWKKAKREA
        +E RYI+NCQ EKA+K+SRQ+  C  S                      SK+LKK K   ++C+VSS NNNK+    GGT         +KI KKA++E 
Subjt:  IEARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGTTKPRHNTKPTKIWKKAKREA

Query:  LQCIETKNLIAFRRNAMQK
        LQ IETKNLIAFRRNA+QK
Subjt:  LQCIETKNLIAFRRNAMQK

XP_038885873.1 uncharacterized protein LOC120076176 [Benincasa hispida]1.5e-8473.84Show/hide
Query:  MYEEVCKITSSFLNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKW
        M EEV KI SSFL++ SINEAIDSL+FLGDVGD DL++L+RILPHCT++QLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKND D VI++MK+KKESFKW
Subjt:  MYEEVCKITSSFLNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKW

Query:  KQIYEAKMEEFEKKARKIEARYIQNCQKEKAQKESRQIIFCGG-SSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGTTK
        KQ+YEAKME  EKKA +IEARY QNCQKE A+K+SR+IIFC   SS  NKKRR EG +I+  CN TESK+LKK  RE Q+C+VSS          GGTTK
Subjt:  KQIYEAKMEEFEKKARKIEARYIQNCQKEKAQKESRQIIFCGG-SSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGTTK

Query:  PRHNTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK
        P H TK +KI KKAKREALQCIETKN+IAFRRNAMQK
Subjt:  PRHNTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK

XP_038885879.1 uncharacterized protein LOC120076185 [Benincasa hispida]9.8e-8171.73Show/hide
Query:  MYEEVCKITSSFLNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKW
        M EEV KI SSFL++ SINEAID+L+FL DVGD DL++L RILPHCT++QL+HIENSSKGRDLT VTDKLWKNFY KKFGKND+D  IERMK+KKESFKW
Subjt:  MYEEVCKITSSFLNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKW

Query:  KQIYEAKMEEFEKKARKIEARYIQNCQKEKAQKESRQIIFCGG-SSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGTTK
        KQ+YEAKME  EKKA +IEARY QNCQKE A+K+SR+IIFC   SS  NKK R EG +I+  CN TESK+LKK  RE Q+C+VSS          GGTTK
Subjt:  KQIYEAKMEEFEKKARKIEARYIQNCQKEKAQKESRQIIFCGG-SSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGTTK

Query:  PRHNTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK
        P H TK +KI KKAKREALQCIETKN+IAFRRNAMQK
Subjt:  PRHNTKPTKIWKKAKREALQCIETKNLIAFRRNAMQK

TrEMBL top hitse value%identityAlignment
A0A0A0KJR8 Nudix hydrolase domain-containing protein1.0e-4355.68Show/hide
Query:  NLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKK
        N  +N+AIDS+KFLGDVGD DL  L+ IL HCT +QL+HIEN SKGRDLTP+T+KLWKNFYE+KFGK+D D V+     K E+FKW  +Y AKM+E E +
Subjt:  NLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKK

Query:  ARKIEARYIQNCQKEKAQKESRQIIFCGG-SSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNK
        A+KIE R IQ+ QKEKA+K+SRQI+FCG   S ++ K     +++ F  N T+S  LKK+KRE  + +VS+ +N +
Subjt:  ARKIEARYIQNCQKEKAQKESRQIIFCGG-SSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNK

A0A1S4E1U0 transcription elongation factor B polypeptide 3 isoform X26.3e-4145.98Show/hide
Query:  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFE
        L +L +N+AID+++FLGDVG+ D++LL+RILPHCT++QLMH+E SS+GRDLTPVTDKLWK FYE++FGK     VIERM+ K+ +F+W Q+YEAKM++ E
Subjt:  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFE

Query:  KKARKIEARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGTTKPRHNTKPTKIWKK
        K   K   R  Q+  KE A+K+SRQI  C    P + KR F G    +G N   +K                                       KI KK
Subjt:  KKARKIEARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGTTKPRHNTKPTKIWKK

Query:  AKREALQCIETKNLIAFRRNAMQK
        AK E LQ  E KN+ A+RRNA+QK
Subjt:  AKREALQCIETKNLIAFRRNAMQK

A0A5D3BGR1 Transcription elongation factor B polypeptide 3 isoform X26.3e-4145.98Show/hide
Query:  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFE
        L +L +N+AID+++FLGDVG+ D++LL+RILPHCT++QLMH+E SS+GRDLTPVTDKLWK FYE++FGK     VIERM+ K+ +F+W Q+YEAKM++ E
Subjt:  LNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFE

Query:  KKARKIEARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGTTKPRHNTKPTKIWKK
        K   K   R  Q+  KE A+K+SRQI  C    P + KR F G    +G N   +K                                       KI KK
Subjt:  KKARKIEARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGTTKPRHNTKPTKIWKK

Query:  AKREALQCIETKNLIAFRRNAMQK
        AK E LQ  E KN+ A+RRNA+QK
Subjt:  AKREALQCIETKNLIAFRRNAMQK

A0A6J1IR58 uncharacterized protein LOC1114792521.5e-5557.08Show/hide
Query:  INEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARK
        +N+AIDSL+FLGDVG  DLN L+ ILPHCT++QLMHIEN SKGRDLTP+T+KLWK FYE+KFGK+D + V++RMKH KESF+WKQ+YE K++E E KA +
Subjt:  INEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARK

Query:  IEARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGTTKPRHNTKPTKIWKKAKREA
        +E RYI+NCQ EKA+K+SRQ+  C  S                      SK+LKK K   ++C+VSS NNNK+    GGT         +KI KKA++E 
Subjt:  IEARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGTTKPRHNTKPTKIWKKAKREA

Query:  LQCIETKNLIAFRRNAMQK
        LQ IETKNLIAFRRNA+QK
Subjt:  LQCIETKNLIAFRRNAMQK

A0A6J1ITM2 uncharacterized protein LOC1114792434.2e-5357.08Show/hide
Query:  INEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARK
        +N+AIDSL+FLGDVG  DLN L+ ILPHCT+ QLM IENSSKGRDLTPVT+KLWK FYE+KFGK+  + V+E MKH KESFKWKQ+YE K++E E+KA +
Subjt:  INEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEEFEKKARK

Query:  IEARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGTTKPRHNTKPTKIWKKAKREA
        IE RYIQNCQ EKA+K+SRQ+  C  S                      SK+LKKSK   + C+VSS +N+K+    GGT         +KI KKA++E 
Subjt:  IEARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGTTKPRHNTKPTKIWKKAKREA

Query:  LQCIETKNLIAFRRNAMQK
        LQ IETKN+IAFRRN +QK
Subjt:  LQCIETKNLIAFRRNAMQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G42780.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).9.6e-2633.82Show/hide
Query:  MYEEVCKITSSFLNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMK-HKKESFK
        ++E + K   S L +L + +AID++K++G VG  D  LL++IL HCT+ QL HIE+++   DL+P+TDK WK FY+K +G+ D   +IE ++ +K   FK
Subjt:  MYEEVCKITSSFLNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMK-HKKESFK

Query:  WKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIE-FGCNATESKLLKKSK----REEQICEVSSMNNNKKKQSF
        W+ +YE K+   ++K +++  R  +  + E  +K+SRQ   C  + P   KR F G S   +     +S ++KK+K    + +++  ++++  N  ++SF
Subjt:  WKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIE-FGCNATESKLLKKSK----REEQICEVSSMNNNKKKQSF

Query:  GGTT
          +T
Subjt:  GGTT

AT2G42780.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684).1.6e-2534Show/hide
Query:  MYEEVCKITSSFLNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMK-HKKESFK
        ++E + K   S L +L + +AID++K++G VG  D  LL++IL HCT+ QL HIE+++   DL+P+TDK WK FY+K +G+ D   +IE ++ +K   FK
Subjt:  MYEEVCKITSSFLNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMK-HKKESFK

Query:  WKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIE-FGCNATESKLLKKSK----REEQICEVSSMNNNKKKQSF
        W+ +YE K+   ++K +++  R  +  + E  +K+SRQ   C  + P   KR F G S   +     +S ++KK+K    + +++  ++++  N  ++SF
Subjt:  WKQIYEAKMEEFEKKARKIEARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIE-FGCNATESKLLKKSK----REEQICEVSSMNNNKKKQSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGAAGAAGTATGTAAAATCACTTCATCCTTTCTTAATAATCTTTCCATTAACGAAGCTATTGATAGTTTGAAGTTTCTTGGAGATGTTGGTGATGCTGATTTAAA
TCTTCTAGACCGTATTTTGCCACATTGTACTATTAATCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACACCTGTGACCGACAAGTTGTGGAAAAATT
TCTATGAGAAAAAGTTTGGTAAGAACGATTATGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAATATATGAGGCAAAGATGGAGGAG
TTCGAAAAGAAGGCAAGGAAAATTGAGGCTCGATATATACAAAACTGTCAAAAGGAAAAAGCTCAAAAAGAAAGTCGTCAAATAATATTTTGTGGGGGTTCCTCTCCAAT
CAATAAGAAACGAAGATTTGAAGGAAAATCAATTGAGTTTGGATGCAATGCCACCGAGAGCAAGCTTTTGAAGAAGTCGAAGAGAGAAGAACAAATTTGTGAAGTTTCAT
CTATGAACAATAATAAGAAGAAACAAAGTTTTGGAGGAACAACCAAACCTAGACATAATACTAAGCCAACCAAGATATGGAAGAAAGCAAAGAGAGAAGCGTTGCAATGT
ATAGAGACAAAGAACCTAATAGCTTTTCGAAGAAATGCGATGCAAAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTATGAAGAAGTATGTAAAATCACTTCATCCTTTCTTAATAATCTTTCCATTAACGAAGCTATTGATAGTTTGAAGTTTCTTGGAGATGTTGGTGATGCTGATTTAAA
TCTTCTAGACCGTATTTTGCCACATTGTACTATTAATCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACACCTGTGACCGACAAGTTGTGGAAAAATT
TCTATGAGAAAAAGTTTGGTAAGAACGATTATGATTTTGTGATTGAGAGGATGAAACATAAGAAAGAATCATTTAAATGGAAGCAAATATATGAGGCAAAGATGGAGGAG
TTCGAAAAGAAGGCAAGGAAAATTGAGGCTCGATATATACAAAACTGTCAAAAGGAAAAAGCTCAAAAAGAAAGTCGTCAAATAATATTTTGTGGGGGTTCCTCTCCAAT
CAATAAGAAACGAAGATTTGAAGGAAAATCAATTGAGTTTGGATGCAATGCCACCGAGAGCAAGCTTTTGAAGAAGTCGAAGAGAGAAGAACAAATTTGTGAAGTTTCAT
CTATGAACAATAATAAGAAGAAACAAAGTTTTGGAGGAACAACCAAACCTAGACATAATACTAAGCCAACCAAGATATGGAAGAAAGCAAAGAGAGAAGCGTTGCAATGT
ATAGAGACAAAGAACCTAATAGCTTTTCGAAGAAATGCGATGCAAAAGTAG
Protein sequenceShow/hide protein sequence
MYEEVCKITSSFLNNLSINEAIDSLKFLGDVGDADLNLLDRILPHCTINQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNDYDFVIERMKHKKESFKWKQIYEAKMEE
FEKKARKIEARYIQNCQKEKAQKESRQIIFCGGSSPINKKRRFEGKSIEFGCNATESKLLKKSKREEQICEVSSMNNNKKKQSFGGTTKPRHNTKPTKIWKKAKREALQC
IETKNLIAFRRNAMQK