; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG05G006100 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G006100
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptiontranscription elongation factor B polypeptide 3
Genome locationCG_Chr05:6055938..6056648
RNA-Seq ExpressionClCG05G006100
SyntenyClCG05G006100
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0070449 - elongin complex (cellular component)
GO:0035529 - NADH pyrophosphatase activity (molecular function)
GO:0047631 - ADP-ribose diphosphatase activity (molecular function)
GO:0051287 - NAD binding (molecular function)
InterPro domainsIPR010684 - RNA polymerase II transcription factor SIII, subunit A


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582214.1 hypothetical protein SDJN03_22216, partial [Cucurbita argyrosperma subsp. sororia]5.6e-5256.16Show/hide
Query:  INEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKK
        +N+AIDSL+FLGDVG  DLN L+HILPHCT+DQLMHIEN SKGRDLTPVT+KLWK FYEKKFG++  + V+E MKH K+SF+WKQ+YE KM+ELE+K  +
Subjt:  INEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKK

Query:  IEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQSFGGTTKPRHNTKPSKIWKKAKREA
        IE +YIQN + EK +K+SRQ+  CE S                      SK+L K K + +IC+V S  NNK+  S+GG T        SKI KKA++E 
Subjt:  IEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQSFGGTTKPRHNTKPSKIWKKAKREA

Query:  LQCIETKNLMAFRRNVMQK
         Q IETKNL+AFRRN +QK
Subjt:  LQCIETKNLMAFRRNVMQK

XP_022979565.1 uncharacterized protein LOC111479243 [Cucurbita maxima]2.8e-5156.16Show/hide
Query:  INEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKK
        +N+AIDSL+FLGDVG TDLN L+HILPHCT++QLM IENSSKGRDLTPVT+KLWK FYE+KFGK+  + V+E MKH K+SFKWKQ+YE K++ELE+K  +
Subjt:  INEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKK

Query:  IEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQSFGGTTKPRHNTKPSKIWKKAKREA
        IE +YIQN Q EKA+K+SRQ+  CE S                      SK+L KSK   + C+V S  +N K+   GGT         SKI KKA++E 
Subjt:  IEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQSFGGTTKPRHNTKPSKIWKKAKREA

Query:  LQCIETKNLMAFRRNVMQK
        LQ IETKN++AFRRN +QK
Subjt:  LQCIETKNLMAFRRNVMQK

XP_022979571.1 uncharacterized protein LOC111479252 [Cucurbita maxima]5.6e-5254.79Show/hide
Query:  INEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKK
        +N+AIDSL+FLGDVG TDLN L+HILPHCT+DQLMHIEN SKGRDLTP+T+KLWK FYE+KFGK++ + V++ MKH K+SF+WKQ+YE K++ELE K  +
Subjt:  INEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKK

Query:  IEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQSFGGTTKPRHNTKPSKIWKKAKREA
        +E +YI+N Q EKA+K+SRQ+  CE S                      SK+L K K   ++C+V S  NN K+   GGT         SKI KKA++E 
Subjt:  IEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQSFGGTTKPRHNTKPSKIWKKAKREA

Query:  LQCIETKNLMAFRRNVMQK
        LQ IETKNL+AFRRN +QK
Subjt:  LQCIETKNLMAFRRNVMQK

XP_038885873.1 uncharacterized protein LOC120076176 [Benincasa hispida]7.0e-7970.89Show/hide
Query:  MCEEVNKTTSSFLNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKW
        MCEEV+K  SSFL++ SINEAIDSL+FLGDVGDTDL++L+ ILPHCT+DQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKN+SD VI+ MK+KK+SFKW
Subjt:  MCEEVNKTTSSFLNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKW

Query:  KQVYETKMEELEKKVKKIEAQYIQNRQKEKAKKESRQIIFCEG-SSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQSFGGTTK
        KQ+YE KME LEKK  +IEA+Y QN QKE A+K+SR+IIFCE  SS  NKK   EG      CNT ESKIL K  RE Q+C+V S          GGTTK
Subjt:  KQVYETKMEELEKKVKKIEAQYIQNRQKEKAKKESRQIIFCEG-SSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQSFGGTTK

Query:  PRHNTKPSKIWKKAKREALQCIETKNLMAFRRNVMQK
        P H TK SKI KKAKREALQCIETKN++AFRRN MQK
Subjt:  PRHNTKPSKIWKKAKREALQCIETKNLMAFRRNVMQK

XP_038885879.1 uncharacterized protein LOC120076185 [Benincasa hispida]6.2e-7567.37Show/hide
Query:  MCEEVNKTTSSFLNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKW
        MCEEV+K  SSFL++ SINEAID+L+FL DVGDTDL++L  ILPHCT+DQL+HIENSSKGRDLT VTDKLWKNFY KKFGKN+ D  IE MK+KK+SFKW
Subjt:  MCEEVNKTTSSFLNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKW

Query:  KQVYETKMEELEKKVKKIEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQSFGGTTKP
        KQ+YE KME LEKK  +IEA+Y QN QKE A+K+SR+IIFCE  S  N K G      +  CNT ESKIL K  RE Q+C+V S          GGTTKP
Subjt:  KQVYETKMEELEKKVKKIEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQSFGGTTKP

Query:  RHNTKPSKIWKKAKREALQCIETKNLMAFRRNVMQK
         H TK SKI KKAKREALQCIETKN++AFRRN MQK
Subjt:  RHNTKPSKIWKKAKREALQCIETKNLMAFRRNVMQK

TrEMBL top hitse value%identityAlignment
A0A0A0KJR8 Nudix hydrolase domain-containing protein2.0e-3953.98Show/hide
Query:  NLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKK
        N  +N+AIDS+KFLGDVGDTDL  L+ IL HCT DQL+HIEN SKGRDLTP+T+KLWKNFYE+KFGK++ D V+     K ++FKW  +Y  KM+ELE +
Subjt:  NLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKK

Query:  VKKIEAQYIQNRQKEKAKKESRQIIFC-EGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNK
         KKIE + IQ+ QKEKA+K+SRQI+FC    S ++ K     +   F  NT +S  L K+KRE  + KV +  N +
Subjt:  VKKIEAQYIQNRQKEKAKKESRQIIFC-EGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNK

A0A1S4E1U0 transcription elongation factor B polypeptide 3 isoform X22.2e-3846.02Show/hide
Query:  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELE
        L +L +N+AID+++FLGDVG+TD++LL+ ILPHCT+DQLMH+E SS+GRDLTPVTDKLWK FYE++FGK ++  VIE M+ K+ +F+W Q+YE KM+++E
Subjt:  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELE

Query:  KKVKKIEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQSFGGTTKPRH--NTKPSKIW
        K   K   +  Q+  KE A+K+SRQI  C                                       KVP   N   K+SFGG+    +  NTK +KI 
Subjt:  KKVKKIEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQSFGGTTKPRH--NTKPSKIW

Query:  KKAKREALQCIETKNLMAFRRNVMQK
        KKAK E LQ  E KN+ A+RRN +QK
Subjt:  KKAKREALQCIETKNLMAFRRNVMQK

A0A5D3BGR1 Transcription elongation factor B polypeptide 3 isoform X22.2e-3846.02Show/hide
Query:  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELE
        L +L +N+AID+++FLGDVG+TD++LL+ ILPHCT+DQLMH+E SS+GRDLTPVTDKLWK FYE++FGK ++  VIE M+ K+ +F+W Q+YE KM+++E
Subjt:  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELE

Query:  KKVKKIEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQSFGGTTKPRH--NTKPSKIW
        K   K   +  Q+  KE A+K+SRQI  C                                       KVP   N   K+SFGG+    +  NTK +KI 
Subjt:  KKVKKIEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQSFGGTTKPRH--NTKPSKIW

Query:  KKAKREALQCIETKNLMAFRRNVMQK
        KKAK E LQ  E KN+ A+RRN +QK
Subjt:  KKAKREALQCIETKNLMAFRRNVMQK

A0A6J1IR58 uncharacterized protein LOC1114792522.7e-5254.79Show/hide
Query:  INEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKK
        +N+AIDSL+FLGDVG TDLN L+HILPHCT+DQLMHIEN SKGRDLTP+T+KLWK FYE+KFGK++ + V++ MKH K+SF+WKQ+YE K++ELE K  +
Subjt:  INEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKK

Query:  IEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQSFGGTTKPRHNTKPSKIWKKAKREA
        +E +YI+N Q EKA+K+SRQ+  CE S                      SK+L K K   ++C+V S  NN K+   GGT         SKI KKA++E 
Subjt:  IEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQSFGGTTKPRHNTKPSKIWKKAKREA

Query:  LQCIETKNLMAFRRNVMQK
        LQ IETKNL+AFRRN +QK
Subjt:  LQCIETKNLMAFRRNVMQK

A0A6J1ITM2 uncharacterized protein LOC1114792431.3e-5156.16Show/hide
Query:  INEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKK
        +N+AIDSL+FLGDVG TDLN L+HILPHCT++QLM IENSSKGRDLTPVT+KLWK FYE+KFGK+  + V+E MKH K+SFKWKQ+YE K++ELE+K  +
Subjt:  INEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEELEKKVKK

Query:  IEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQSFGGTTKPRHNTKPSKIWKKAKREA
        IE +YIQN Q EKA+K+SRQ+  CE S                      SK+L KSK   + C+V S  +N K+   GGT         SKI KKA++E 
Subjt:  IEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQSFGGTTKPRHNTKPSKIWKKAKREA

Query:  LQCIETKNLMAFRRNVMQK
        LQ IETKN++AFRRN +QK
Subjt:  LQCIETKNLMAFRRNVMQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G42780.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).7.6e-2331.94Show/hide
Query:  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMK-HKKKSFKWKQVYETKMEEL
        L +L + +AID++K++G VG  D  LL+ IL HCT++QL HIE+++   DL+P+TDK WK FY+K +G+ +   +IE ++ +K   FKW+ +YE K+  +
Subjt:  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMK-HKKKSFKWKQVYETKMEEL

Query:  EKKVKKIEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSK----REEQICKVPSMINNKKKQSFGGTT
        ++K K++  +  +  + E  +K+SRQ   C   +P +K+  +    + +     +S I+ K+K    + +++  + ++  N  ++SF  +T
Subjt:  EKKVKKIEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSK----REEQICKVPSMINNKKKQSFGGTT

AT2G42780.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684).1.5e-2331.72Show/hide
Query:  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMK-HKKKSFKWKQVYETKMEEL
        L +L + +AID++K++G VG  D  LL+ IL HCT++QL HIE+++   DL+P+TDK WK FY+K +G+ +   +IE ++ +K   FKW+ +YE K+  +
Subjt:  LNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMK-HKKKSFKWKQVYETKMEEL

Query:  EKKVKKIEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQSFGGTTKPRHNT--KPSKI
        ++K K++  +  +  + E  +K+SRQ   C  + P                                            K+ F G +   +N     S I
Subjt:  EKKVKKIEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQSFGGTTKPRHNT--KPSKI

Query:  WKKAKREALQCIETKNLMAFRRNVMQK
         KKAK + L+  E KNL A +RN +QK
Subjt:  WKKAKREALQCIETKNLMAFRRNVMQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGAAGAAGTAAATAAAACAACTTCATCATTTCTTAATAATCTTTCCATTAATGAAGCTATTGATAGTTTGAAGTTTCTTGGAGATGTTGGCGATACTGATTTAAA
TCTTCTAGATCATATTTTGCCACACTGTACTATTGACCAATTGATGCATATAGAAAACTCTTCCAAAGGAAGGGATCTCACACCCGTGACTGACAAGTTGTGGAAAAATT
TCTATGAAAAAAAGTTCGGTAAGAACAATTCTGATTTTGTGATTGAGGGGATGAAACATAAGAAAAAATCATTTAAATGGAAGCAAGTGTATGAGACAAAGATGGAAGAG
TTAGAAAAGAAGGTAAAGAAAATTGAGGCTCAATATATACAAAACCGTCAAAAGGAAAAAGCTAAAAAAGAAAGTCGTCAAATAATATTTTGTGAGGGTTCCTCTCCAAT
CAATAAGAAACTTGGATTTGAAGGAAAACCAAATGAGTTTGGATGCAATACCAACGAGAGCAAGATTTTGAATAAGTCAAAGAGAGAAGAACAAATTTGTAAAGTTCCAT
CTATGATCAATAATAAGAAGAAACAAAGCTTTGGAGGAACAACCAAACCTAGGCACAATACTAAGCCAAGCAAGATATGGAAGAAAGCAAAAAGAGAAGCGTTGCAGTGT
ATAGAGACGAAGAACCTAATGGCTTTTCGAAGAAATGTGATGCAAAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTGAAGAAGTAAATAAAACAACTTCATCATTTCTTAATAATCTTTCCATTAATGAAGCTATTGATAGTTTGAAGTTTCTTGGAGATGTTGGCGATACTGATTTAAA
TCTTCTAGATCATATTTTGCCACACTGTACTATTGACCAATTGATGCATATAGAAAACTCTTCCAAAGGAAGGGATCTCACACCCGTGACTGACAAGTTGTGGAAAAATT
TCTATGAAAAAAAGTTCGGTAAGAACAATTCTGATTTTGTGATTGAGGGGATGAAACATAAGAAAAAATCATTTAAATGGAAGCAAGTGTATGAGACAAAGATGGAAGAG
TTAGAAAAGAAGGTAAAGAAAATTGAGGCTCAATATATACAAAACCGTCAAAAGGAAAAAGCTAAAAAAGAAAGTCGTCAAATAATATTTTGTGAGGGTTCCTCTCCAAT
CAATAAGAAACTTGGATTTGAAGGAAAACCAAATGAGTTTGGATGCAATACCAACGAGAGCAAGATTTTGAATAAGTCAAAGAGAGAAGAACAAATTTGTAAAGTTCCAT
CTATGATCAATAATAAGAAGAAACAAAGCTTTGGAGGAACAACCAAACCTAGGCACAATACTAAGCCAAGCAAGATATGGAAGAAAGCAAAAAGAGAAGCGTTGCAGTGT
ATAGAGACGAAGAACCTAATGGCTTTTCGAAGAAATGTGATGCAAAAGTAG
Protein sequenceShow/hide protein sequence
MCEEVNKTTSSFLNNLSINEAIDSLKFLGDVGDTDLNLLDHILPHCTIDQLMHIENSSKGRDLTPVTDKLWKNFYEKKFGKNNSDFVIEGMKHKKKSFKWKQVYETKMEE
LEKKVKKIEAQYIQNRQKEKAKKESRQIIFCEGSSPINKKLGFEGKPNEFGCNTNESKILNKSKREEQICKVPSMINNKKKQSFGGTTKPRHNTKPSKIWKKAKREALQC
IETKNLMAFRRNVMQK