CuGenDBv2

Gene ID	ClCG05G006775
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Protein Ycf2
Genome location	CG_Chr05:6868711..6869226
RNA-Seq Expression	ClCG05G006775
Synteny	ClCG05G006775
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

YP_009420838.1 Ycf2 [Citrullus colocynthis]

1.4e-81

95.48

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSVVQDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCS+FDNDRVTLLL PEPRNPLD+IQNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYEQYESEFEEGEGEG L+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

YP_009560879.1 Ycf2 [Trichosanthes kirilowii]

1.4e-81

95.48

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSVVQDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCS+FDNDRVTLLL PEPRNPLD+IQNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYEQYESEFEEGEGEG L+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

YP_009752033.1 Ycf2 protein [Cionosicys macranthus]

1.4e-81

95.48

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSVVQDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCS+FDNDRVTLLL PEPRNPLD+IQNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYEQYESEFEEGEGEG L+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

YP_009752286.1 Ycf2 protein [Trichosanthes baviensis]

1.4e-81

95.48

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSVVQDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCS+FDNDRVTLLL PEPRNPLD+IQNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYEQYESEFEEGEGEG L+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

YP_010131137.1 hypothetical protein RF2 [Benincasa hispida]

1.4e-81

95.48

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSVVQDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCS+FDNDRVTLLL PEPRNPLD+IQNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYEQYESEFEEGEGEG L+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

TrEMBL top hits

e value

%identity

Alignment

A0A343F2F1 Protein Ycf2

6.9e-82

95.48

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSVVQDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCS+FDNDRVTLLL PEPRNPLD+IQNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYEQYESEFEEGEGEG L+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

A0A410HFC5 Protein Ycf2

6.9e-82

95.48

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSVVQDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCS+FDNDRVTLLL PEPRNPLD+IQNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYEQYESEFEEGEGEG L+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

A0A6H0ET42 Protein Ycf2

6.9e-82

95.48

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSVVQDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCS+FDNDRVTLLL PEPRNPLD+IQNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYEQYESEFEEGEGEG L+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

A0A6M3RUH1 Protein Ycf2

6.9e-82

95.48

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSVVQDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCS+FDNDRVTLLL PEPRNPLD+IQNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYEQYESEFEEGEGEG L+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

A0A7G9IT80 Protein Ycf2

6.9e-82

95.48

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSVVQDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCS+FDNDRVTLLL PEPRNPLD+IQNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYEQYESEFEEGEGEG L+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

SwissProt top hits

e value

%identity

Alignment

A0A379 Protein Ycf2

1.9e-81

91.61

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSV QDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGAL+GSSRTEKDCSQFDNDRVTLLL PEPRNPLD++Q+GSCSI+DQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYE+YESEFEEGEGEGAL+PQQIEEDLFN+IVWAPRIWRPW FLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

B1A978 Protein Ycf2

7.4e-81

91.61

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSV QDLWSLP PDEKNGITSYG VENDSDLVHGLLEVEGAL+GSSRTEKDCSQFDNDRVTLLL  EPRNPL ++QNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYE+YESEFEEGEGEG L+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

Q09MB4 Protein Ycf2

4.3e-81

91.61

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSV QDLWSLP PDEKNGITS GLVENDSDLVHGLLEVEGAL+GSSRTEKDCS+FDNDRVTLLL PEPRNPLD++Q GSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYE+YESEFEEGEGEG L+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

Q0ZIV6 Protein Ycf2

3.9e-82

92.9

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSV QDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGAL+GSSRTEKDCSQFDNDRVTLLL PEPRNPLD++QNGSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYE+YESEFEEG GEGAL+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIER NE
Subjt:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

Q68RU4 Protein Ycf2

1.3e-82

92.9

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKKL ILLYLLSCSAGSV QDLWSLP PDEKNGITSYGLVENDSDLVHGLLEVEGAL+GSSRTEKDCSQFDNDRVTLLL PEPRNPLD++QNGSCSI+DQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYE+ ESEFEEGEGEGAL+PQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

5.1e-77

87.1

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKK  ILLYLLSCSAGSV QDLWSLP PDEKN ITSYG VENDSDLVHGLLEV+GAL+GSSRTEKDCSQFDNDRVTLL   EPR+PL ++Q+GSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYE+YESEFEEGEGEG L+PQQIEEDLFNHIVWAPRIWRP GFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

5.1e-77

87.1

Show/hide

Query:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ
        MKK  ILLYLLSCSAGSV QDLWSLP PDEKN ITSYG VENDSDLVHGLLEV+GAL+GSSRTEKDCSQFDNDRVTLL   EPR+PL ++Q+GSCSIVDQ
Subjt:  MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQ

Query:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE
        RFLYE+YESEFEEGEGEG L+PQQIEEDLFNHIVWAPRIWRP GFLFDCIERPNE
Subjt:  RFLYEQYESEFEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAGAAATTAATGATACTTCTTTATCTTTTGAGTTGTTCTGCCGGATCGGTCGTTCAAGACCTTTGGTCTCTACCCGAACCCGATGAAAAAAATGGGATCACTTCTTA
TGGACTCGTTGAAAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTATTGGGATCCTCTCGAACAGAAAAAGATTGCAGTCAATTTGATAATGATC
GAGTGACCTTGCTTCTTTGGCCCGAACCCAGAAATCCCTTAGATATAATACAAAATGGATCTTGTTCTATCGTTGATCAGAGATTTCTTTATGAACAATACGAATCGGAG
TTTGAAGAAGGGGAAGGAGAAGGAGCCCTCAACCCACAACAGATAGAGGAGGATTTATTTAATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGGGCTTTCTATT
TGATTGTATCGAAAGGCCCAATGAATATCCCGAGCAACACTTCAAGTTCTCCTTGCTCAAGCCAACAAGATTTTGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MKKLMILLYLLSCSAGSVVQDLWSLPEPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSQFDNDRVTLLLWPEPRNPLDIIQNGSCSIVDQRFLYEQYESE
FEEGEGEGALNPQQIEEDLFNHIVWAPRIWRPWGFLFDCIERPNEYPEQHFKFSLLKPTRF

ClCG05G006775 (gene) of Watermelon (Charleston Gray) v2.5 genome