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ClCG05G006780 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G006780
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionLYR motif-containing 5A
Genome locationCG_Chr05:6908250..6910850
RNA-Seq ExpressionClCG05G006780
SyntenyClCG05G006780
Gene Ontology termsNA
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7146428.1 hypothetical protein RHSIM_Rhsim04G0245400 [Rhododendron simsii]1.4e-2954.37Show/hide
Query:  MPSLQTALPPELANNVIRVGSLLSFFAI--------QFP------PQNFLALHVLSL---QLYRECLRRAKYIGHQLYPVIGRSRGFNIGSLKLVNPINS
        MPSLQTALPPELANNVIRV +   +  +        QFP          + + VLS+   +LYRECLRRAKY+G                          
Subjt:  MPSLQTALPPELANNVIRVGSLLSFFAI--------QFP------PQNFLALHVLSL---QLYRECLRRAKYIGHQLYPVIGRSRGFNIGSLKLVNPINS

Query:  LQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS
         +QHNTEL+V MVRQQFRK+M ET+P+KIQKLKDDAARGLINHILYESE+MSGRKFSQ+S
Subjt:  LQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS

KAG6757946.1 hypothetical protein POTOM_038275 [Populus tomentosa]1.1e-3156.77Show/hide
Query:  MPSLQTALPPELANNVIRVGSLLSFFAIQFPPQNFLALHVLSLQLYRECLRRAKYIGHQLYPVIGRSRG-FNI---GSLKLV--------NPINSLQQHN
        MPSLQTALPPELANNVIR                          LYRECLRRAKYIGHQ      ++ G +++   G++ LV         P ++L QHN
Subjt:  MPSLQTALPPELANNVIRVGSLLSFFAIQFPPQNFLALHVLSLQLYRECLRRAKYIGHQLYPVIGRSRG-FNI---GSLKLV--------NPINSLQQHN

Query:  TELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS
        TELLV MVRQQF++N  ETDPEKIQKLKDDAARGLINHILYESER+SGRK S+S+
Subjt:  TELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS

KAG8372827.1 hypothetical protein BUALT_Bualt12G0107500 [Buddleja alternifolia]5.6e-3157.14Show/hide
Query:  MPSLQTALPPELANNVIRVGSLLSFFAIQFPPQNFLALHVLSLQLYRECLRRAKYIGHQ----LYPVIGRSRGFNIGSLKLVNPINSLQQHNTELLVTMV
        MPSLQTALPPELANN IR                          LYRECLRRAKYIG +     +P      G N+G    VN    +Q++NTELLV MV
Subjt:  MPSLQTALPPELANNVIRVGSLLSFFAIQFPPQNFLALHVLSLQLYRECLRRAKYIGHQ----LYPVIGRSRGFNIGSLKLVNPINSLQQHNTELLVTMV

Query:  RQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS
        RQQF+K+M ETDP+KIQKLKDDAARGLINH+LYESE +SGRKFS+SS
Subjt:  RQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS

XP_022138283.1 uncharacterized protein LOC111009499 [Momordica charantia]1.1e-3160.84Show/hide
Query:  MPSLQTALPPELANNVIRVGSLLSFFAIQFPPQNFLALHVLSLQLYRECLRRAKYIGHQLYPVIGRSRGFNIGSLKLVNPINSLQQHNTELLVTMVRQQF
        MPSLQTALPPELANNVIR                          LYRECLRRAKYIGH                          QQHNTEL+V+MVRQQF
Subjt:  MPSLQTALPPELANNVIRVGSLLSFFAIQFPPQNFLALHVLSLQLYRECLRRAKYIGHQLYPVIGRSRGFNIGSLKLVNPINSLQQHNTELLVTMVRQQF

Query:  RKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS
        RKNM ETDPEKIQKLKDDAARGLINHILYESER+SGRKFSQSS
Subjt:  RKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS

XP_038878962.1 uncharacterized protein LOC120071039 [Benincasa hispida]6.0e-3362.94Show/hide
Query:  MPSLQTALPPELANNVIRVGSLLSFFAIQFPPQNFLALHVLSLQLYRECLRRAKYIGHQLYPVIGRSRGFNIGSLKLVNPINSLQQHNTELLVTMVRQQF
        MPSLQTALPPELANNVIR                          LYRECLRRAKYIGH                          QQHNTELLV+MVRQQF
Subjt:  MPSLQTALPPELANNVIRVGSLLSFFAIQFPPQNFLALHVLSLQLYRECLRRAKYIGHQLYPVIGRSRGFNIGSLKLVNPINSLQQHNTELLVTMVRQQF

Query:  RKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS
        RKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS
Subjt:  RKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS

TrEMBL top hitse value%identityAlignment
A0A1U8B538 uncharacterized protein LOC104607091 isoform X18.8e-3057.34Show/hide
Query:  MPSLQTALPPELANNVIRVGSLLSFFAIQFPPQNFLALHVLSLQLYRECLRRAKYIGHQLYPVIGRSRGFNIGSLKLVNPINSLQQHNTELLVTMVRQQF
        MPSLQTALPPELANNVIR                          LYRECLRRA++IGH+                   +     QQHNTEL+V MVRQQF
Subjt:  MPSLQTALPPELANNVIRVGSLLSFFAIQFPPQNFLALHVLSLQLYRECLRRAKYIGHQLYPVIGRSRGFNIGSLKLVNPINSLQQHNTELLVTMVRQQF

Query:  RKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS
        +K+M ETDPEKIQKLKDDAARGLINHILYESE+MSGRKFS SS
Subjt:  RKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS

A0A6J1C9Q7 uncharacterized protein LOC1110094995.5e-3260.84Show/hide
Query:  MPSLQTALPPELANNVIRVGSLLSFFAIQFPPQNFLALHVLSLQLYRECLRRAKYIGHQLYPVIGRSRGFNIGSLKLVNPINSLQQHNTELLVTMVRQQF
        MPSLQTALPPELANNVIR                          LYRECLRRAKYIGH                          QQHNTEL+V+MVRQQF
Subjt:  MPSLQTALPPELANNVIRVGSLLSFFAIQFPPQNFLALHVLSLQLYRECLRRAKYIGHQLYPVIGRSRGFNIGSLKLVNPINSLQQHNTELLVTMVRQQF

Query:  RKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS
        RKNM ETDPEKIQKLKDDAARGLINHILYESER+SGRKFSQSS
Subjt:  RKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS

A0A6J1I5B4 uncharacterized protein LOC1114708038.8e-3057.34Show/hide
Query:  MPSLQTALPPELANNVIRVGSLLSFFAIQFPPQNFLALHVLSLQLYRECLRRAKYIGHQLYPVIGRSRGFNIGSLKLVNPINSLQQHNTELLVTMVRQQF
        MPSLQTALPPELANNVIR                          LYRECLRRAKYIGH                          +QHNT+L+V+MV+QQF
Subjt:  MPSLQTALPPELANNVIRVGSLLSFFAIQFPPQNFLALHVLSLQLYRECLRRAKYIGHQLYPVIGRSRGFNIGSLKLVNPINSLQQHNTELLVTMVRQQF

Query:  RKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS
        RKNM ETDPEKIQKLKDDAARGLINHILYESER++GRK SQSS
Subjt:  RKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS

A0A7N2R6B7 Uncharacterized protein1.1e-2957.34Show/hide
Query:  MPSLQTALPPELANNVIRVGSLLSFFAIQFPPQNFLALHVLSLQLYRECLRRAKYIGHQLYPVIGRSRGFNIGSLKLVNPINSLQQHNTELLVTMVRQQF
        MPSLQTALPPELANNVIR                          LYRECLRRAKYIGH                          +QHNTEL+V MVRQQF
Subjt:  MPSLQTALPPELANNVIRVGSLLSFFAIQFPPQNFLALHVLSLQLYRECLRRAKYIGHQLYPVIGRSRGFNIGSLKLVNPINSLQQHNTELLVTMVRQQF

Query:  RKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS
        +K+M ETDPEKIQKLKDDAARGLINHILYESE+MSGRKFS+S+
Subjt:  RKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS

D7T656 Uncharacterized protein1.5e-2957.34Show/hide
Query:  MPSLQTALPPELANNVIRVGSLLSFFAIQFPPQNFLALHVLSLQLYRECLRRAKYIGHQLYPVIGRSRGFNIGSLKLVNPINSLQQHNTELLVTMVRQQF
        MPSLQTALPPELANNVIR                          LYRECLRRA+YIGH                          QQHNTEL+V MVRQQF
Subjt:  MPSLQTALPPELANNVIRVGSLLSFFAIQFPPQNFLALHVLSLQLYRECLRRAKYIGHQLYPVIGRSRGFNIGSLKLVNPINSLQQHNTELLVTMVRQQF

Query:  RKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS
        +K+M ETDPEKIQKLKDDAARGLINHILYESE+MSGRKFS+ S
Subjt:  RKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G17300.1 unknown protein4.8e-2851.05Show/hide
Query:  MPSLQTALPPELANNVIRVGSLLSFFAIQFPPQNFLALHVLSLQLYRECLRRAKYIGHQLYPVIGRSRGFNIGSLKLVNPINSLQQHNTELLVTMVRQQF
        MPSLQT+LPPELANNV+R                          LYRECLRRAK+IG                           QQHNTEL+V MVRQQF
Subjt:  MPSLQTALPPELANNVIRVGSLLSFFAIQFPPQNFLALHVLSLQLYRECLRRAKYIGHQLYPVIGRSRGFNIGSLKLVNPINSLQQHNTELLVTMVRQQF

Query:  RKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS
        +K+M ETDPEKIQKLKDDAARGLINH+L+ES +++G K SQ S
Subjt:  RKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS

AT3G17300.2 unknown protein9.0e-1973.77Show/hide
Query:  SLQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS
        +L QHNTEL+V MVRQQF+K+M ETDPEKIQKLKDDAARGLINH+L+ES +++G K SQ S
Subjt:  SLQQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATCTCTACAGACTGCTTTGCCTCCTGAGCTTGCAAATAATGTCATTAGGGTTGGTTCCCTCCTATCCTTTTTTGCAATACAATTTCCTCCACAAAATTTCTTAGC
TTTGCACGTCTTATCACTGCAGCTTTACCGCGAGTGCCTTCGAAGAGCTAAGTATATTGGTCATCAGTTGTATCCAGTTATAGGAAGGTCTAGAGGATTTAACATTGGTT
CCTTGAAACTTGTTAATCCTATCAACTCCTTGCAGCAACATAACACCGAGCTTCTTGTTACTATGGTGAGGCAACAATTCAGAAAAAACATGCGTGAGACTGATCCAGAG
AAGATTCAGAAGTTGAAAGATGATGCTGCTAGGGGACTTATAAACCATATTCTATATGAATCTGAGAGAATGTCAGGTCGAAAATTCAGCCAAAGTTCTTGA
mRNA sequenceShow/hide mRNA sequence
CCGGACCGCTGCAGACTGACGAACCGTTCAGTGCGGTTAGAATCCAAATGCGTTCGGCTCCAAACCAATTACACCCAAACCCCAAAGAAGAGTGTTCCTTCTTGAGGAGG
AGGCCTTCTTAGACTGATTTTCTTCAACACTTCAAATCAAATTCGGGAGCTTGGCTGTTTGATTTTCTTCATCACTTCAGGAGGAGTAGGTGTGAAAAGGGCGGAAATGC
CATCTCTACAGACTGCTTTGCCTCCTGAGCTTGCAAATAATGTCATTAGGGTTGGTTCCCTCCTATCCTTTTTTGCAATACAATTTCCTCCACAAAATTTCTTAGCTTTG
CACGTCTTATCACTGCAGCTTTACCGCGAGTGCCTTCGAAGAGCTAAGTATATTGGTCATCAGTTGTATCCAGTTATAGGAAGGTCTAGAGGATTTAACATTGGTTCCTT
GAAACTTGTTAATCCTATCAACTCCTTGCAGCAACATAACACCGAGCTTCTTGTTACTATGGTGAGGCAACAATTCAGAAAAAACATGCGTGAGACTGATCCAGAGAAGA
TTCAGAAGTTGAAAGATGATGCTGCTAGGGGACTTATAAACCATATTCTATATGAATCTGAGAGAATGTCAGGTCGAAAATTCAGCCAAAGTTCTTGATGTTATATGGAG
AATGACATCAAGTAAAAGGTCTCCATTGAAATTTCAGATATTGTAGGAATAAGATGGCTGTTGATGAAAGTACTCCTTGGAGGTTATTTTTGCATTTCCTTGTTTATTTC
TACGATTTGTTAAAGGAAAACGTCCATTTTACACTAAGTGTTGAACTTTTCTCCATCTGCAATCTTCATTTTATTGTGTAAAGTGGAAGTTTAAGGAAGATATGACATAC
ATTGTTCAACTCTAAAGTCCAGGTTTTACTTTAATATGGCTCTCTTTTTTCTTTT
Protein sequenceShow/hide protein sequence
MPSLQTALPPELANNVIRVGSLLSFFAIQFPPQNFLALHVLSLQLYRECLRRAKYIGHQLYPVIGRSRGFNIGSLKLVNPINSLQQHNTELLVTMVRQQFRKNMRETDPE
KIQKLKDDAARGLINHILYESERMSGRKFSQSS