; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

ClCG05G006830 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G006830
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Descriptionsignal recognition particle 19 kDa protein
Genome locationCG_Chr05:6936092..6939800
RNA-Seq ExpressionClCG05G006830
SyntenyClCG05G006830
Gene Ontology termsGO:0006614 - SRP-dependent cotranslational protein targeting to membrane (biological process)
GO:0005786 - signal recognition particle, endoplasmic reticulum targeting (cellular component)
GO:0004386 - helicase activity (molecular function)
GO:0008312 - 7S RNA binding (molecular function)
InterPro domainsIPR002778 - Signal recognition particle, SRP19 subunit
IPR036521 - Signal recognition particle, subunit SRP19-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582147.1 Signal recognition particle 19 kDa protein, partial [Cucurbita argyrosperma subsp. sororia]3.3e-6895.71Show/hide
Query:  EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQ
        E GWNMDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDGTLSNPAI SRKQ
Subjt:  EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQ

Query:  LMLRIAELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK
        LMLRIAELVPRHPGR KKQEPASSST AGPSKGKGGRKKK
Subjt:  LMLRIAELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK

KGN54616.2 hypothetical protein Csa_018066 [Cucumis sativus]4.9e-7287.97Show/hide
Query:  RFPIRNQLILGLVESHRHEFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQ
        R P+   LI+ +      EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEIDKAYPRDFMQRGRVRV 
Subjt:  RFPIRNQLILGLVESHRHEFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQ

Query:  LKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK
        LKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS+ AGPSKGKGGRKKK
Subjt:  LKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK

XP_004147628.1 signal recognition particle 19 kDa protein [Cucumis sativus]8.1e-6798.52Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDG LSNPAITSRKQLMLRI
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK
        AELVPRHPGRTKKQEPASSST AGPSKGKGGRKKK
Subjt:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK

XP_008438988.1 PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo]2.8e-6798.52Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLR+
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK
        AELVPRHPGRTKKQEPASSST AGPSKGKGGRKKK
Subjt:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK

XP_038879562.1 signal recognition particle 19 kDa protein [Benincasa hispida]1.4e-6698.52Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDGTLSNPAITSRKQLMLRI
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK
        AELVPRHPGRTKKQEPASSST AGPSKGKGGRKKK
Subjt:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK

TrEMBL top hitse value%identityAlignment
A0A0A0L5F9 Uncharacterized protein1.4e-6997.86Show/hide
Query:  EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQ
        EFG NMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDG LSNPAITSRKQ
Subjt:  EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQ

Query:  LMLRIAELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK
        LMLRIAELVPRHPGRTKKQEPASSST AGPSKGKGGRKKK
Subjt:  LMLRIAELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK

A0A1S3AYC2 signal recognition particle 19 kDa protein1.3e-6798.52Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLR+
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK
        AELVPRHPGRTKKQEPASSST AGPSKGKGGRKKK
Subjt:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK

A0A6J1CAM2 signal recognition particle 19 kDa protein3.7e-6596.32Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI
        MDGE+PNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDGTLSNPAITSRKQ+MLRI
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSTAAGPSK-GKGGRKKK
        AELVPRHPGRTKKQEPASSST AGPSK GKGGRKKK
Subjt:  AELVPRHPGRTKKQEPASSSTAAGPSK-GKGGRKKK

A0A6J1GUF8 signal recognition particle 19 kDa protein2.2e-6596.3Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDGTLSNPAI SRKQLMLRI
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK
        AELVPRHPGR KKQEPASSST AGPSKGKGGRKKK
Subjt:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK

A0A6J1IY39 signal recognition particle 19 kDa protein1.6e-6597.04Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRV LKKEDGTLSNPAI SRKQLMLRI
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK
        AELVPRHPGR KKQEPASSST AGPSKGKGGRKKK
Subjt:  AELVPRHPGRTKKQEPASSSTAAGPSKGKGGRKKK

SwissProt top hitse value%identityAlignment
P09132 Signal recognition particle 19 kDa protein1.5e-2350Show/hide
Query:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVP
        R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     RD   RGRVRVQLK+EDG+L      SRK +ML  AE++P
Subjt:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVP

Query:  RHPGRTKKQEPASSSTAAGPSKGKGGRKKK
        +   RT+K   A  S   G    KG  KKK
Subjt:  RHPGRTKKQEPASSSTAAGPSKGKGGRKKK

P49964 Signal recognition particle 19 kDa protein2.1e-4973.64Show/hide
Query:  NIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPR
        +IK+W V+YP+Y+NSKKT+AEGRRI   KAC +PTC EI DCCSHLK+P AIE+DKAYPRDF Q GRVRVQLKK+DG+  NPAI ++KQLM++IAELVP+
Subjt:  NIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPR

Query:  HPGRTKKQEPASSSTAAGPSKGKGGRKKK
        H GRTKKQEPA+SST AG SKGKGG+KKK
Subjt:  HPGRTKKQEPASSSTAAGPSKGKGGRKKK

Q5RBR1 Signal recognition particle 19 kDa protein1.5e-2350Show/hide
Query:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVP
        R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     RD   RGRVRVQLK+EDG+L      SRK +ML  AE++P
Subjt:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVP

Query:  RHPGRTKKQEPASSSTAAGPSKGKGGRKKK
        +   RT+K   A  S   G    KG  KKK
Subjt:  RHPGRTKKQEPASSSTAAGPSKGKGGRKKK

Q943Z6 Signal recognition particle 19 kDa protein7.2e-5070.34Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI
        MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+CENP C EI DCC HLKLP A+EIDKAYPRDFMQ GRVRVQLK+EDGTL NPAITSRK LM +I
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQE---------PASSSTAAGPSK-GKGGRKKK
        AELVPRHP R KKQE          A++ST+   SK GKGG+KK+
Subjt:  AELVPRHPGRTKKQE---------PASSSTAAGPSK-GKGGRKKK

Q9D7A6 Signal recognition particle 19 kDa protein2.6e-2349.62Show/hide
Query:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVP
        R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D CS + L   +E +K Y     RD   RGRVRVQLK+EDG+L      SRK +ML +AE++P
Subjt:  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYP----RDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVP

Query:  RHPGRTKKQEPASS--STAAGPSKGKGGRKK
        +   RT+K   A        G  KGKG +KK
Subjt:  RHPGRTKKQEPASS--STAAGPSKGKGGRKK

Arabidopsis top hitse value%identityAlignment
AT1G48160.1 signal recognition particle 19 kDa protein, putative / SRP19, putative5.1e-5170.34Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI
        MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+CENP C EI DCC HLKLP A+EIDKAYPRDFMQ GRVRVQLK+EDGTL NPAITSRK LM +I
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRI

Query:  AELVPRHPGRTKKQE---------PASSSTAAGPSK-GKGGRKKK
        AELVPRHP R KKQE          A++ST+   SK GKGG+KK+
Subjt:  AELVPRHPGRTKKQE---------PASSSTAAGPSK-GKGGRKKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCTTTTAAGTGCCATTCTATGGTGCACACACTTACTTTCTAGGGCCGAAGAAATTGATGACGTCGATTTGGGTGGCGTTAGAGAGGAAAAAAAAAAAGAAAAAGA
AAAAGAAAAAGAAAAATCCTATTCTGCCTTCGGCCTCGCCCCATTTTCCTTTCCGATTCTCTCGCTCAATTTCGCCCATTGTCGCGGTTTGGCCGGAACAGAAGAATCAG
ATCTCTGTTTAGCTTCTCGATTTCCCATTCGTAATCAATTGATTCTTGGATTAGTAGAATCTCATAGGCATGAATTTGGTTGGAATATGGATGGAGAAATTCCCAACATA
AAGAGATGGGTAGTACTGTATCCAATCTATATTAATTCAAAGAAGACAATTGCTGAAGGAAGACGTATAGGTGTTAGCAAAGCATGTGAGAATCCAACCTGTGCTGAGAT
TGGGGATTGCTGCAGTCATCTCAAACTGCCCTTTGCTATTGAGATTGATAAAGCATATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGGGTCCAGCTGAAGAAGGAGG
ACGGAACTCTGTCTAATCCAGCTATTACTTCCAGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGACAAAGAAGCAGGAGCCTGCATCC
TCATCAACGGCAGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGCTTTTAAGTGCCATTCTATGGTGCACACACTTACTTTCTAGGGCCGAAGAAATTGATGACGTCGATTTGGGTGGCGTTAGAGAGGAAAAAAAAAAAGAAAAAGA
AAAAGAAAAAGAAAAATCCTATTCTGCCTTCGGCCTCGCCCCATTTTCCTTTCCGATTCTCTCGCTCAATTTCGCCCATTGTCGCGGTTTGGCCGGAACAGAAGAATCAG
ATCTCTGTTTAGCTTCTCGATTTCCCATTCGTAATCAATTGATTCTTGGATTAGTAGAATCTCATAGGCATGAATTTGGTTGGAATATGGATGGAGAAATTCCCAACATA
AAGAGATGGGTAGTACTGTATCCAATCTATATTAATTCAAAGAAGACAATTGCTGAAGGAAGACGTATAGGTGTTAGCAAAGCATGTGAGAATCCAACCTGTGCTGAGAT
TGGGGATTGCTGCAGTCATCTCAAACTGCCCTTTGCTATTGAGATTGATAAAGCATATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGGGTCCAGCTGAAGAAGGAGG
ACGGAACTCTGTCTAATCCAGCTATTACTTCCAGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGGACAAAGAAGCAGGAGCCTGCATCC
TCATCAACGGCAGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAGATGCATTATGTAATTGCAAGAACCAGATTGTTATCGACCAGGCAGGCAGTTTCGTT
TTCAGGTCTTAGTTCTTAATTCTTGAGACCTTTGAGTATTGGTGTTCTATCTCAGCCCCATCCGAAACGAATACTAACACAGTGGTCTGTTTTTGTGAAGAGTCAGTGAT
ACTTTTTTCTTGATGGTCGATTCAGTGACTGAAAAAAATAGTCACGGAAGGCAGTTGTGACAATTTTTAAGTGTCGTGGAATCTCACATTTGATATATGGGTTTGTCTTG
AACAATTTTGTAAATTAGTGGATCATGAAGTTTTTTACTAAGATAAAGTTGGTGATAGGACAAAAGGATGGTGGATGAGAATTAAGTTGAATGATCCACTCTTTTCTAAA
TCCTTTGAGATTGGAGGTGATAGAATACGATTTACAAGTCTGGAGATTGATGAATGTGGATATTGCTCAATAATTTGCTGCCAGAGTCAGAATCTGGAAGTATGAAAATT
TTGAGATTTTTGCTTGTAATCATTAACAAACATACTTAAGCTCTTTCCAGGTTGTTTGCTGAAGAACTTTGGAATTCTTAGGTTTTGAGAAGGTCGAGTTTGTCATCATC
AGATTATTCAAACATTAGTTTCTGTTGTTGGTTGGATAGAGATGTCTTTCTGTTGTTGGTGGATAGAGATGTCCATCAAACATGTCGGGATCTACCTCGTACAGAGTGGA
GAATTCCTAATTACATGGGAATGTGTGTAGGTGCATTTCCCTGCTCTCGCCCGATGATTATTATTATTATTAT
Protein sequenceShow/hide protein sequence
MGLLSAILWCTHLLSRAEEIDDVDLGGVREEKKKEKEKEKEKSYSAFGLAPFSFPILSLNFAHCRGLAGTEESDLCLASRFPIRNQLILGLVESHRHEFGWNMDGEIPNI
KRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEIDKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPAS
SSTAAGPSKGKGGRKKK