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ClCG05G007310 (gene) of Watermelon (Charleston Gray) v2.5 genome

Gene IDClCG05G007310
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionReverse transcriptase domain-containing protein
Genome locationCG_Chr05:7665058..7665788
RNA-Seq ExpressionClCG05G007310
SyntenyClCG05G007310
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011650214.1 uncharacterized protein LOC105434766 [Cucumis sativus]5.7e-3147.26Show/hide
Query:  MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAHTLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDN
        MKIL+WNVRGIGS QKR   K VI+  +P+FV L++TKL+ V+ K++KS+WSSISI +     +G  GGI++MWD L H       G  ++  +   +D 
Subjt:  MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAHTLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDN

Query:  VMWWILGIYGPASRRNRKFFWEELDTLASTCNSCWILGGAFNVYRW
          WWI  +Y   +R  RK FW+EL  LA TC S W+L G FN  RW
Subjt:  VMWWILGIYGPASRRNRKFFWEELDTLASTCNSCWILGGAFNVYRW

XP_021820446.1 uncharacterized protein LOC110762145 [Prunus avium]1.6e-2539.73Show/hide
Query:  MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAHTLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDN
        MKI+SWN+RG+GS +KR + K  +T + P+ V L +TK   +D++++ S+W S   DW    STG  GGI+I+W++      +      S+ + IR +  
Subjt:  MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAHTLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDN

Query:  VMWWILGIYGPASRRNRKFFWEELDTLASTCNSCWILGGAFNVYRW
          WW+ GIYGP  +R+R  FW EL  L   C   W +GG FNV R+
Subjt:  VMWWILGIYGPASRRNRKFFWEELDTLASTCNSCWILGGAFNVYRW

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]3.5e-3646.84Show/hide
Query:  MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAHTLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDN
        M IL+WNVRG+GSA KRA  K  IT++ P+ V L++TK   ++ K IKSLWSSISI WA   ++G  GGII++WD L   A EV  G  S+ V  + +DN
Subjt:  MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAHTLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDN

Query:  VMWWILGIYGPASRRNRKFFWEELDTLASTCNSCWILGGAFNVYRWPMKLHHADHPDS
          WW+ G+Y P  ++ RK FW+EL  L   C   W+LG  FN+YRW  +   A+ P +
Subjt:  VMWWILGIYGPASRRNRKFFWEELDTLASTCNSCWILGGAFNVYRWPMKLHHADHPDS

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]1.5e-2642.47Show/hide
Query:  MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAHTLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDN
        MK L+WNVRG+ S +K A+ K  I+ ++PN V L +TKL  +D  I+KSLWS+  I+W+   ++G   GI+I+W+     A E+ +G  SL ++   SD 
Subjt:  MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAHTLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDN

Query:  VMWWILGIYGPASRRNRKFFWEELDTLASTCNSCWILGGAFNVYRW
         ++W+ GIYGP++      FW+EL  L+  C + WIL G FNV RW
Subjt:  VMWWILGIYGPASRRNRKFFWEELDTLASTCNSCWILGGAFNVYRW

XP_030941739.1 uncharacterized protein LOC115966706 [Quercus lobata]9.5e-2639.74Show/hide
Query:  SMKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAHTLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFS-
        ++KI+SWNVRG+    KR   + +I +  P+ V L +TK+ L+ K +I+SLW    +DW++  S G FGG+++MWD+ +   D+V +      VS +F  
Subjt:  SMKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAHTLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFS-

Query:  --DNVMWWILGIYGPASRRNRKFFWEELDTLASTCNSCWILGGAFNVYRWP
          D  +W   G+YGP    +R+F WEEL  L+S  N  W +GG FNV R+P
Subjt:  --DNVMWWILGIYGPASRRNRKFFWEELDTLASTCNSCWILGGAFNVYRWP

TrEMBL top hitse value%identityAlignment
A0A5A7UV84 Reverse transcriptase domain-containing protein1.0e-2542.07Show/hide
Query:  MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAHTLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDN
        MK+L+WN RG+GS  KRA+ K  I + SP+FV LT+T L + +K+IIKS W S SI+W    ++G+ GGI+I+WD+  H      +   SL  +   ++N
Subjt:  MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAHTLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDN

Query:  VMWWILGIYGPASRRNRKFFWEELDTLASTCNSCWILGGAFNVYR
          WW+ G+YGP  RR R  FW +L  L    +  W L    NV R
Subjt:  VMWWILGIYGPASRRNRKFFWEELDTLASTCNSCWILGGAFNVYR

A0A5D3CI86 Reverse transcriptase domain-containing protein1.0e-2542.07Show/hide
Query:  MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAHTLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDN
        MK+L+WN RG+GS  KRA+ K  I + SP+FV LT+T L + +K+IIKS W S SI+W    ++G+ GGI+I+WD+  H      +   SL  +   ++N
Subjt:  MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAHTLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDN

Query:  VMWWILGIYGPASRRNRKFFWEELDTLASTCNSCWILGGAFNVYR
          WW+ G+YGP  RR R  FW +L  L    +  W L    NV R
Subjt:  VMWWILGIYGPASRRNRKFFWEELDTLASTCNSCWILGGAFNVYR

A0A6J1CVN2 uncharacterized protein LOC1110146571.7e-3646.84Show/hide
Query:  MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAHTLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDN
        M IL+WNVRG+GSA KRA  K  IT++ P+ V L++TK   ++ K IKSLWSSISI WA   ++G  GGII++WD L   A EV  G  S+ V  + +DN
Subjt:  MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAHTLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDN

Query:  VMWWILGIYGPASRRNRKFFWEELDTLASTCNSCWILGGAFNVYRWPMKLHHADHPDS
          WW+ G+Y P  ++ RK FW+EL  L   C   W+LG  FN+YRW  +   A+ P +
Subjt:  VMWWILGIYGPASRRNRKFFWEELDTLASTCNSCWILGGAFNVYRWPMKLHHADHPDS

A0A6J1E2G6 uncharacterized protein LOC1110254057.1e-2742.47Show/hide
Query:  MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAHTLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDN
        MK L+WNVRG+ S +K A+ K  I+ ++PN V L +TKL  +D  I+KSLWS+  I+W+   ++G   GI+I+W+     A E+ +G  SL ++   SD 
Subjt:  MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAHTLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDN

Query:  VMWWILGIYGPASRRNRKFFWEELDTLASTCNSCWILGGAFNVYRW
         ++W+ GIYGP++      FW+EL  L+  C + WIL G FNV RW
Subjt:  VMWWILGIYGPASRRNRKFFWEELDTLASTCNSCWILGGAFNVYRW

A0A6P5T1U8 uncharacterized protein LOC1107621457.8e-2639.73Show/hide
Query:  MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAHTLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDN
        MKI+SWN+RG+GS +KR + K  +T + P+ V L +TK   +D++++ S+W S   DW    STG  GGI+I+W++      +      S+ + IR +  
Subjt:  MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAHTLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDN

Query:  VMWWILGIYGPASRRNRKFFWEELDTLASTCNSCWILGGAFNVYRW
          WW+ GIYGP  +R+R  FW EL  L   C   W +GG FNV R+
Subjt:  VMWWILGIYGPASRRNRKFFWEELDTLASTCNSCWILGGAFNVYRW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGGATTGAAGTTTCCTGATAACCAGGTGCTCATGAAGGGAGAACCAATTCCACAAAGGTTGATAACATGCAAGGAGCACCAAGGGTCCATGAAGATCCTCTCATG
GAATGTGAGGGGCATTGGCTCAGCCCAGAAAAGAGCCATTACAAAGGGTGTTATCACGGCTGTAAGCCCGAACTTTGTCTTTCTAACTAAAACGAAATTAGTCTTAGTGG
ATAAGAAGATTATCAAATCTCTCTGGAGTTCCATCAGTATCGATTGGGCACACACGCTTTCCACTGGTACATTTGGGGGAATCATAATCATGTGGGACTCTTTAATCCAC
TATGCAGATGAGGTTTATGATGGAAGCAACTCCTTATTAGTCTCTATCAGGTTTTCAGATAATGTTATGTGGTGGATATTGGGAATATATGGTCCTGCTAGCAGACGAAA
CAGAAAGTTTTTTTGGGAAGAGCTTGACACTCTAGCTTCAACTTGCAATAGCTGCTGGATTTTGGGGGGAGCCTTCAATGTTTATAGATGGCCAATGAAACTACATCATG
CAGACCATCCAGACTCAACATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGGATTGAAGTTTCCTGATAACCAGGTGCTCATGAAGGGAGAACCAATTCCACAAAGGTTGATAACATGCAAGGAGCACCAAGGGTCCATGAAGATCCTCTCATG
GAATGTGAGGGGCATTGGCTCAGCCCAGAAAAGAGCCATTACAAAGGGTGTTATCACGGCTGTAAGCCCGAACTTTGTCTTTCTAACTAAAACGAAATTAGTCTTAGTGG
ATAAGAAGATTATCAAATCTCTCTGGAGTTCCATCAGTATCGATTGGGCACACACGCTTTCCACTGGTACATTTGGGGGAATCATAATCATGTGGGACTCTTTAATCCAC
TATGCAGATGAGGTTTATGATGGAAGCAACTCCTTATTAGTCTCTATCAGGTTTTCAGATAATGTTATGTGGTGGATATTGGGAATATATGGTCCTGCTAGCAGACGAAA
CAGAAAGTTTTTTTGGGAAGAGCTTGACACTCTAGCTTCAACTTGCAATAGCTGCTGGATTTTGGGGGGAGCCTTCAATGTTTATAGATGGCCAATGAAACTACATCATG
CAGACCATCCAGACTCAACATGA
Protein sequenceShow/hide protein sequence
MQGLKFPDNQVLMKGEPIPQRLITCKEHQGSMKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAHTLSTGTFGGIIIMWDSLIH
YADEVYDGSNSLLVSIRFSDNVMWWILGIYGPASRRNRKFFWEELDTLASTCNSCWILGGAFNVYRWPMKLHHADHPDST